Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46759 * 124.34659 * 2 1 4 4 C 1.54480 * 105.47286 * 196.74642 * 3 2 1 5 5 H 1.09001 * 110.97255 * 216.46237 * 4 3 2 6 6 N 1.46503 * 110.96394 * 92.70621 * 4 3 2 7 7 C 1.34781 * 120.00031 * 155.00094 * 6 4 3 8 8 O 1.21723 * 119.99653 * 359.97438 * 7 6 4 9 9 C 1.46253 * 120.00342 * 179.97438 * 7 6 4 10 10 C 1.35014 * 120.00177 * 173.21268 * 9 7 6 11 11 C 1.46967 * 120.00117 * 348.68470 * 10 9 7 12 12 C 1.40025 * 120.09950 * 316.41151 * 11 10 9 13 13 C 1.37600 * 119.89211 * 179.69832 * 12 11 10 14 14 C 1.39165 * 120.10448 * 0.59139 * 13 12 11 15 15 O 1.35567 * 119.90024 * 179.70053 * 14 13 12 16 16 C 1.34782 * 117.00515 * 174.34257 * 15 14 13 17 17 H 1.08010 * 119.99692 * 5.05739 * 16 15 14 18 18 C 1.38714 * 120.00564 * 185.06337 * 16 15 14 19 19 N 1.31506 * 120.00072 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00210 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47102 * 90.00038 * 20 18 16 22 22 H 1.48500 * 109.47217 * 209.99712 * 20 18 16 23 23 H 1.48491 * 109.47298 * 330.00017 * 20 18 16 24 24 C 1.39178 * 120.20431 * 359.68217 * 14 13 12 25 25 C 1.37601 * 120.09939 * 0.02562 * 24 14 13 26 26 C 1.54624 * 101.76861 * 334.58637 * 4 3 2 27 27 C 1.34421 * 124.35072 * 179.69911 * 2 1 3 28 28 O 1.21281 * 124.94021 * 359.83884 * 27 2 1 29 29 H 1.09000 * 109.47157 * 90.00596 * 1 2 3 30 30 H 1.09000 * 109.46857 * 209.99624 * 1 2 3 31 31 H 1.08995 * 109.47308 * 329.99760 * 1 2 3 32 32 H 1.08998 * 110.24881 * 315.74797 * 3 2 1 33 33 H 1.09000 * 110.24604 * 77.66353 * 3 2 1 34 34 H 0.96999 * 120.00344 * 334.99220 * 6 4 3 35 35 H 1.08001 * 119.99649 * 353.21332 * 9 7 6 36 36 H 1.08004 * 120.00029 * 168.68692 * 10 9 7 37 37 H 1.07999 * 120.04943 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.94456 * 180.31879 * 13 12 11 39 39 H 0.96998 * 120.00531 * 180.02562 * 19 18 16 40 40 H 1.07996 * 119.95008 * 180.02562 * 24 14 13 41 41 H 1.08002 * 120.04895 * 180.02562 * 25 24 14 42 42 H 1.08995 * 110.48949 * 143.46845 * 26 4 3 43 43 H 1.08998 * 110.48763 * 265.98407 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7026 0.7476 -0.4290 5 1 4.4750 1.3014 0.1048 6 7 3.8773 0.8730 -1.8781 7 6 5.1126 1.0150 -2.3982 8 8 6.0830 1.0394 -1.6638 9 6 5.2872 1.1396 -3.8450 10 6 6.5051 1.4185 -4.3565 11 6 7.5965 1.8407 -3.4673 12 6 7.3546 2.7763 -2.4541 13 6 8.3782 3.1639 -1.6200 14 6 9.6548 2.6368 -1.7902 15 8 10.6615 3.0261 -0.9699 16 6 11.8438 2.3942 -1.1096 17 1 11.9809 1.6743 -1.9030 18 6 12.8845 2.6682 -0.2343 19 7 12.7177 3.5451 0.7315 20 14 14.5228 1.7918 -0.4274 21 1 15.4025 2.5797 -1.3278 22 1 15.1705 1.6547 0.9018 23 1 14.2978 0.4446 -1.0098 24 6 9.9012 1.7108 -2.7996 25 6 8.8825 1.3128 -3.6346 26 6 3.6899 -0.7378 0.0004 27 6 2.2235 -1.1098 0.0058 28 8 1.7946 -2.2442 0.0146 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9011 1.9364 -0.7136 33 1 2.3255 1.6464 0.9990 34 1 3.1040 0.8537 -2.4634 35 1 4.4417 1.0085 -4.5041 36 1 6.6774 1.3314 -5.4192 37 1 6.3653 3.1897 -2.3246 38 1 8.1914 3.8817 -0.8350 39 1 13.4455 3.7370 1.3434 40 1 10.8934 1.3040 -2.9277 41 1 9.0745 0.5939 -4.4174 42 1 4.2354 -1.3477 -0.7195 43 1 4.1179 -0.8506 0.9965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491576065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -31.405272 kcal Electronic energy + Delta-G solvation = -27154.388441 eV Core-core repulsion = 23166.621740 eV Total energy + Delta-G solvation = -3987.766701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93799 -39.59423 -38.70129 -37.00544 -36.33467 -34.44375 -33.10315 -32.19910 -31.57155 -30.14572 -28.24163 -27.77651 -26.71381 -25.45263 -23.68347 -21.93069 -21.62746 -20.92004 -20.00303 -19.29745 -17.96209 -17.38018 -17.21062 -16.85374 -16.51445 -15.83073 -15.28007 -14.90272 -14.73026 -14.55461 -14.23394 -14.00468 -13.83465 -13.66887 -13.46391 -13.42017 -13.06658 -12.92006 -12.85159 -12.63958 -12.48792 -12.20484 -12.04254 -11.86412 -11.70909 -11.38575 -11.02605 -10.71474 -10.64106 -10.42817 -10.15759 -9.58983 -9.46709 -9.22812 -9.18002 -9.06689 -8.71994 -7.95501 -6.89424 -6.47581 -4.03224 1.18710 2.31155 2.39774 2.62536 2.66974 3.09451 3.12806 3.14285 3.18670 3.51423 3.95954 3.99160 4.16422 4.50675 4.67108 4.78990 4.85211 4.98740 5.01053 5.08544 5.09934 5.19454 5.25149 5.31646 5.32977 5.50515 5.60461 5.66267 5.71591 5.81716 6.08068 6.22262 6.28355 6.34614 6.42848 6.56360 6.70708 6.75910 7.00854 7.10470 7.33183 7.41787 7.48402 7.52780 7.85996 7.89686 7.99115 8.42081 8.98204 9.69572 10.70179 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002453 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.211522 B =11412.075742 C =12145.081540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.628 5.628 3 C 0.095 3.905 4 C 0.137 3.863 5 H 0.123 0.877 6 N -0.730 5.730 7 C 0.543 3.457 8 O -0.506 6.506 9 C -0.270 4.270 10 C 0.032 3.968 11 C -0.192 4.192 12 C 0.012 3.988 13 C -0.203 4.203 14 C 0.171 3.829 15 O -0.172 6.172 16 C -0.390 4.390 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.250 4.250 25 C -0.040 4.040 26 C -0.168 4.168 27 C 0.518 3.482 28 O -0.533 6.533 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.397 0.603 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.491 -2.742 -5.674 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.364 5.364 3 C -0.028 4.028 4 C 0.031 3.969 5 H 0.141 0.859 6 N -0.384 5.384 7 C 0.333 3.667 8 O -0.381 6.381 9 C -0.291 4.291 10 C 0.012 3.988 11 C -0.193 4.193 12 C -0.007 4.007 13 C -0.222 4.222 14 C 0.116 3.884 15 O -0.074 6.074 16 C -0.466 4.466 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.270 4.270 25 C -0.059 4.059 26 C -0.210 4.210 27 C 0.307 3.693 28 O -0.409 6.409 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.231 0.769 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.913 -3.042 -4.731 21.657 hybrid contribution 0.221 -0.519 -0.402 0.692 sum -20.693 -3.561 -5.133 21.615 Atomic orbital electron populations 1.21538 0.77975 1.03171 1.01906 1.48216 1.06533 1.07363 1.74274 1.22454 0.89945 0.87451 1.02957 1.21725 0.96884 0.95281 0.83044 0.85901 1.45998 1.09146 1.76786 1.06441 1.18526 0.82329 0.76390 0.89437 1.91015 1.37776 1.47956 1.61357 1.22539 0.98822 1.14232 0.93555 1.22352 0.91585 0.86503 0.98310 1.18289 0.93042 1.05794 1.02166 1.20426 0.95864 0.93372 0.90989 1.19996 0.90970 1.07252 1.03983 1.19530 0.88625 0.90988 0.89215 1.83901 1.18254 1.54229 1.51036 1.21398 0.86627 1.22919 1.15636 0.88867 1.25325 0.99449 0.96915 0.94859 1.70017 1.33046 1.30930 1.15390 0.85698 0.80184 0.79374 0.78122 1.19828 1.20212 1.19115 1.20959 1.00153 1.05352 1.00511 1.20750 0.91484 0.96655 0.96989 1.22848 0.94186 0.98278 1.05640 1.20999 0.89423 0.84227 0.74694 1.90725 1.78813 1.21172 1.50217 0.92570 0.90690 0.90946 0.89484 0.89375 0.76934 0.86163 0.86053 0.88074 0.86832 0.91929 0.85656 0.87614 0.87403 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 10.97 59.85 0.66 1.23 16 2 N -0.63 -5.01 3.33 -180.29 -0.60 -5.61 16 3 C 0.10 0.57 6.97 -3.12 -0.02 0.55 16 4 C 0.14 1.18 3.53 -66.30 -0.23 0.95 16 5 H 0.12 1.22 7.54 -51.93 -0.39 0.82 16 6 N -0.73 -6.74 5.12 -53.66 -0.27 -7.01 16 7 C 0.54 7.08 6.77 -13.04 -0.09 6.99 16 8 O -0.51 -8.89 11.82 5.17 0.06 -8.83 16 9 C -0.27 -3.11 9.90 -37.51 -0.37 -3.48 16 10 C 0.03 0.42 9.80 -37.19 -0.36 0.06 16 11 C -0.19 -3.38 4.54 -105.02 -0.48 -3.86 16 12 C 0.01 0.23 6.59 -39.14 -0.26 -0.03 16 13 C -0.20 -4.46 9.97 -39.47 -0.39 -4.86 16 14 C 0.17 4.25 6.66 -38.89 -0.26 3.99 16 15 O -0.17 -4.97 9.74 0.75 0.01 -4.96 16 16 C -0.39 -10.96 9.48 30.91 0.29 -10.67 16 17 H 0.09 2.43 5.18 -52.48 -0.27 2.16 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 20 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.25 -5.59 9.14 -39.47 -0.36 -5.95 16 25 C -0.04 -0.76 9.78 -39.15 -0.38 -1.14 16 26 C -0.17 -1.69 6.59 -26.74 -0.18 -1.86 16 27 C 0.52 5.85 8.02 -10.86 -0.09 5.76 16 28 O -0.53 -8.21 17.59 5.56 0.10 -8.12 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.54 7.92 -51.93 -0.41 0.12 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 2.72 8.64 -40.82 -0.35 2.36 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.10 1.69 7.02 -52.49 -0.37 1.32 16 38 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.78 5.62 -52.49 -0.29 2.49 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 1.25 8.09 -51.93 -0.42 0.83 16 43 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -35.88 367.56 -7.50 -43.39 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.45 Total: 5.85 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.62 Total: -11.34 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.12 Total: -37.07 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.17 Total: -21.90 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.88 -7.50 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491576065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.982 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds