Wall clock time and date at job start Tue Mar 31 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99798 * 2 1 4 4 N 1.34775 * 120.00631 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00299 * 180.02562 * 4 2 1 6 6 C 1.53499 * 114.20431 * 205.00249 * 5 4 2 7 7 N 1.47067 * 87.98171 * 220.34615 * 6 5 4 8 8 C 1.34781 * 136.05396 * 207.08980 * 7 6 5 9 9 O 1.21712 * 120.00110 * 359.97438 * 8 7 6 10 10 C 1.46262 * 119.99815 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99961 * 173.15148 * 10 8 7 12 12 C 1.46965 * 119.99665 * 346.79231 * 11 10 8 13 13 C 1.40029 * 120.09517 * 135.35591 * 12 11 10 14 14 C 1.37598 * 119.89367 * 179.97438 * 13 12 11 15 15 C 1.39182 * 120.10048 * 0.27566 * 14 13 12 16 16 O 1.35566 * 119.89587 * 179.70331 * 15 14 13 17 17 C 1.34784 * 117.00151 * 7.25239 * 16 15 14 18 18 H 1.08000 * 120.00159 * 6.24128 * 17 16 15 19 19 C 1.38719 * 120.00087 * 186.23901 * 17 16 15 20 20 N 1.31505 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47382 * 89.99988 * 21 19 17 23 23 H 1.48500 * 109.46986 * 210.00000 * 21 19 17 24 24 H 1.48504 * 109.46689 * 329.99637 * 21 19 17 25 25 C 1.39174 * 120.20229 * 359.44137 * 15 14 13 26 26 C 1.37599 * 120.10108 * 0.56014 * 25 15 14 27 27 C 1.47061 * 87.88903 * 27.34074 * 7 6 5 28 28 H 1.08997 * 109.46875 * 269.99125 * 1 2 3 29 29 H 1.09000 * 109.47240 * 29.99674 * 1 2 3 30 30 H 1.09004 * 109.46728 * 150.00117 * 1 2 3 31 31 H 0.97005 * 119.99414 * 0.02562 * 4 2 1 32 32 H 1.08997 * 113.28125 * 338.06158 * 5 4 2 33 33 H 1.08992 * 113.47122 * 105.56188 * 6 5 4 34 34 H 1.09005 * 113.46391 * 335.11711 * 6 5 4 35 35 H 1.08001 * 119.99827 * 353.14710 * 10 8 7 36 36 H 1.07995 * 120.00154 * 166.79283 * 11 10 8 37 37 H 1.07998 * 120.05292 * 359.95243 * 13 12 11 38 38 H 1.08000 * 119.95143 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00073 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.94948 * 180.27654 * 25 15 14 41 41 H 1.08004 * 120.04838 * 179.74293 * 26 25 15 42 42 H 1.09005 * 113.46835 * 87.43474 * 27 7 6 43 43 H 1.08999 * 113.47219 * 217.88133 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6460 -1.1670 0.0000 6 6 4.2757 -2.4354 -0.5923 7 7 5.2757 -2.3792 0.4846 8 6 6.5489 -2.7897 0.6489 9 8 7.1239 -3.3666 -0.2556 10 6 7.2396 -2.5419 1.9141 11 6 8.4625 -3.0717 2.1307 12 6 8.9772 -4.1207 1.2393 13 6 10.2968 -4.0620 0.7744 14 6 10.7745 -5.0467 -0.0595 15 6 9.9466 -6.0967 -0.4457 16 8 10.4197 -7.0614 -1.2723 17 6 11.7357 -7.0279 -1.5618 18 1 12.3805 -6.3195 -1.0630 19 6 12.2620 -7.9033 -2.5004 20 7 11.4768 -8.7655 -3.1082 21 14 14.0859 -7.8573 -2.9011 22 1 14.8151 -8.7816 -1.9961 23 1 14.2939 -8.2776 -4.3101 24 1 14.5987 -6.4760 -2.7158 25 6 8.6362 -6.1623 0.0186 26 6 8.1498 -5.1821 0.8529 27 6 4.2731 -1.6837 1.3054 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6960 -2.0072 -0.0013 32 1 4.0769 -0.2380 -0.3732 33 1 4.6987 -2.2869 -1.5858 34 1 3.6263 -3.3092 -0.5363 35 1 6.7714 -1.9352 2.6751 36 1 9.0625 -2.7246 2.9589 37 1 10.9384 -3.2450 1.0697 38 1 11.7920 -5.0021 -0.4190 39 1 11.8448 -9.3779 -3.7643 40 1 7.9987 -6.9813 -0.2801 41 1 7.1315 -5.2316 1.2093 42 1 3.6230 -2.3593 1.8614 43 1 4.6939 -0.8947 1.9286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492000595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:56 Heat of formation + Delta-G solvation = -0.289118 kcal Electronic energy + Delta-G solvation = -26561.073190 eV Core-core repulsion = 22574.655787 eV Total energy + Delta-G solvation = -3986.417403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.90664 -39.59300 -38.93722 -37.94656 -36.28796 -34.24907 -33.06565 -32.14208 -30.71946 -30.13731 -29.04617 -27.57318 -26.36927 -25.39978 -23.43219 -21.99516 -21.63553 -21.13602 -20.34829 -18.55650 -17.93742 -17.42820 -17.32412 -16.90808 -16.76572 -15.89850 -15.39849 -14.89684 -14.70267 -14.54055 -14.12161 -14.06310 -13.80050 -13.57777 -13.43769 -13.25381 -13.05514 -12.92795 -12.85444 -12.62435 -12.62112 -12.31290 -12.19077 -11.69270 -11.47409 -11.33811 -11.02309 -10.71029 -10.60105 -10.40578 -10.36369 -9.63472 -9.51240 -9.43632 -9.17337 -8.81212 -8.69936 -7.97930 -6.89609 -6.46521 -4.02256 1.21064 2.16420 2.38148 2.47486 2.64288 3.04909 3.13637 3.14646 3.18994 3.57258 3.93727 3.96760 4.34479 4.39713 4.67639 4.71277 4.74867 4.81768 4.92280 5.06619 5.11246 5.13383 5.22680 5.32010 5.32227 5.39240 5.50286 5.58388 5.69554 5.75332 5.82987 6.00753 6.24710 6.32500 6.44449 6.59054 6.77052 6.99652 7.02114 7.11403 7.33840 7.42808 7.48889 7.70830 7.75380 7.90457 7.99856 8.41834 8.99100 9.71061 10.71325 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002042 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.127171 B =13706.941193 C =14333.949637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.543 6.543 4 N -0.719 5.719 5 C 0.107 3.893 6 C 0.097 3.903 7 N -0.648 5.648 8 C 0.575 3.425 9 O -0.504 6.504 10 C -0.260 4.260 11 C 0.030 3.970 12 C -0.187 4.187 13 C -0.042 4.042 14 C -0.246 4.246 15 C 0.170 3.830 16 O -0.172 6.172 17 C -0.389 4.389 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.200 4.200 26 C 0.002 3.998 27 C 0.088 3.912 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.405 0.595 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.271 0.729 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 14.026 10.167 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.420 6.420 4 N -0.371 5.371 5 C 0.001 3.999 6 C -0.027 4.027 7 N -0.386 5.386 8 C 0.368 3.632 9 O -0.379 6.379 10 C -0.281 4.281 11 C 0.010 3.990 12 C -0.188 4.188 13 C -0.060 4.060 14 C -0.266 4.266 15 C 0.115 3.885 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.219 4.219 26 C -0.017 4.017 27 C -0.037 4.037 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.240 0.760 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.571 13.999 9.372 25.074 hybrid contribution 0.508 -0.325 -0.139 0.619 sum -18.063 13.673 9.233 24.464 Atomic orbital electron populations 1.21896 0.91330 1.05103 1.04937 1.20902 0.90718 0.83388 0.74933 1.90754 1.70802 1.31395 1.49041 1.45940 1.06431 1.09151 1.75625 1.22944 0.79859 1.00173 0.96949 1.23190 0.88872 0.96313 0.94324 1.49300 1.10437 1.61006 1.17894 1.18048 0.78405 0.77613 0.89130 1.91024 1.63702 1.39717 1.43418 1.22481 0.98644 1.09598 0.97391 1.22359 0.92557 0.89385 0.94691 1.18306 0.95050 0.98103 1.07337 1.20751 0.93405 0.96432 0.95415 1.20980 1.01539 0.97585 1.06452 1.19545 0.92401 0.87473 0.89076 1.83928 1.26473 1.42517 1.54554 1.21383 0.80519 1.21054 1.23604 0.88931 1.25338 1.00534 0.95448 0.95282 1.70022 1.35697 1.18819 1.24807 0.85693 0.80422 0.79049 0.78166 1.19817 1.20232 1.19131 1.20005 0.94625 1.02497 1.04811 1.20437 0.95899 0.91862 0.93474 1.23477 0.89044 0.95641 0.95528 0.88687 0.88753 0.90005 0.76021 0.85102 0.89625 0.89747 0.86187 0.85808 0.87501 0.85573 0.91937 0.86795 0.88189 0.89758 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.30 36.01 0.37 -0.17 16 2 C 0.51 3.67 7.94 -10.99 -0.09 3.59 16 3 O -0.54 -6.59 16.69 5.55 0.09 -6.50 16 4 N -0.72 -3.84 5.38 -53.49 -0.29 -4.12 16 5 C 0.11 0.82 4.63 -67.68 -0.31 0.51 16 6 C 0.10 0.89 8.38 -8.50 -0.07 0.82 16 7 N -0.65 -7.61 3.69 -186.78 -0.69 -8.29 16 8 C 0.57 8.97 7.06 -13.03 -0.09 8.87 16 9 O -0.50 -10.26 13.26 5.18 0.07 -10.20 16 10 C -0.26 -3.46 9.71 -37.50 -0.36 -3.82 16 11 C 0.03 0.43 9.79 -37.19 -0.36 0.06 16 12 C -0.19 -3.51 4.43 -105.03 -0.47 -3.97 16 13 C -0.04 -0.82 9.78 -39.14 -0.38 -1.20 16 14 C -0.25 -5.68 9.10 -39.46 -0.36 -6.04 16 15 C 0.17 4.36 6.65 -38.88 -0.26 4.10 16 16 O -0.17 -5.09 9.74 0.74 0.01 -5.09 16 17 C -0.39 -11.13 9.41 30.91 0.29 -10.84 16 18 H 0.09 2.45 5.33 -52.49 -0.28 2.17 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 21 Si 0.94 20.79 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.20 -4.63 9.97 -39.47 -0.39 -5.02 16 26 C 0.00 0.04 6.74 -39.15 -0.26 -0.23 16 27 C 0.09 0.68 8.15 -8.37 -0.07 0.62 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.40 0.95 8.76 -40.82 -0.36 0.59 16 32 H 0.13 1.27 7.45 -51.93 -0.39 0.88 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.12 1.20 7.98 -52.49 -0.42 0.79 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 2.88 5.74 -52.49 -0.30 2.58 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.11 2.55 8.06 -52.49 -0.42 2.13 16 41 H 0.10 1.83 7.24 -52.48 -0.38 1.45 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -37.62 372.81 -7.86 -45.48 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.49 Total: 3.86 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.92 Total: -11.74 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.22 Total: -37.20 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.62 -7.86 -45.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492000595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.193 kcal (2) G-P(sol) polarization free energy of solvation -37.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds