Wall clock time and date at job start Tue Mar 31 2020 05:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21285 * 119.99798 * 2 1 4 4 N 1.34775 * 120.00631 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00299 * 180.02562 * 4 2 1 6 6 C 1.53499 * 114.20431 * 205.00249 * 5 4 2 7 7 N 1.47067 * 87.98171 * 220.34615 * 6 5 4 8 8 C 1.34781 * 136.05396 * 207.08980 * 7 6 5 9 9 O 1.21712 * 120.00110 * 359.97438 * 8 7 6 10 10 C 1.46262 * 119.99815 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99961 * 173.15148 * 10 8 7 12 12 C 1.46965 * 119.99665 * 346.79231 * 11 10 8 13 13 C 1.40029 * 120.09517 * 135.35591 * 12 11 10 14 14 C 1.37598 * 119.89367 * 179.97438 * 13 12 11 15 15 C 1.39182 * 120.10048 * 0.27566 * 14 13 12 16 16 O 1.35566 * 119.89587 * 179.70331 * 15 14 13 17 17 C 1.34784 * 117.00151 * 7.25239 * 16 15 14 18 18 H 1.08000 * 120.00159 * 6.24128 * 17 16 15 19 19 C 1.38719 * 120.00087 * 186.23901 * 17 16 15 20 20 N 1.31505 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47382 * 89.99988 * 21 19 17 23 23 H 1.48500 * 109.46986 * 210.00000 * 21 19 17 24 24 H 1.48504 * 109.46689 * 329.99637 * 21 19 17 25 25 C 1.39174 * 120.20229 * 359.44137 * 15 14 13 26 26 C 1.37599 * 120.10108 * 0.56014 * 25 15 14 27 27 C 1.47061 * 87.88903 * 27.34074 * 7 6 5 28 28 H 1.08997 * 109.46875 * 269.99125 * 1 2 3 29 29 H 1.09000 * 109.47240 * 29.99674 * 1 2 3 30 30 H 1.09004 * 109.46728 * 150.00117 * 1 2 3 31 31 H 0.97005 * 119.99414 * 0.02562 * 4 2 1 32 32 H 1.08997 * 113.28125 * 338.06158 * 5 4 2 33 33 H 1.08992 * 113.47122 * 105.56188 * 6 5 4 34 34 H 1.09005 * 113.46391 * 335.11711 * 6 5 4 35 35 H 1.08001 * 119.99827 * 353.14710 * 10 8 7 36 36 H 1.07995 * 120.00154 * 166.79283 * 11 10 8 37 37 H 1.07998 * 120.05292 * 359.95243 * 13 12 11 38 38 H 1.08000 * 119.95143 * 179.97438 * 14 13 12 39 39 H 0.97001 * 120.00073 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.94948 * 180.27654 * 25 15 14 41 41 H 1.08004 * 120.04838 * 179.74293 * 26 25 15 42 42 H 1.09005 * 113.46835 * 87.43474 * 27 7 6 43 43 H 1.08999 * 113.47219 * 217.88133 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6460 -1.1670 0.0000 6 6 4.2757 -2.4354 -0.5923 7 7 5.2757 -2.3792 0.4846 8 6 6.5489 -2.7897 0.6489 9 8 7.1239 -3.3666 -0.2556 10 6 7.2396 -2.5419 1.9141 11 6 8.4625 -3.0717 2.1307 12 6 8.9772 -4.1207 1.2393 13 6 10.2968 -4.0620 0.7744 14 6 10.7745 -5.0467 -0.0595 15 6 9.9466 -6.0967 -0.4457 16 8 10.4197 -7.0614 -1.2723 17 6 11.7357 -7.0279 -1.5618 18 1 12.3805 -6.3195 -1.0630 19 6 12.2620 -7.9033 -2.5004 20 7 11.4768 -8.7655 -3.1082 21 14 14.0859 -7.8573 -2.9011 22 1 14.8151 -8.7816 -1.9961 23 1 14.2939 -8.2776 -4.3101 24 1 14.5987 -6.4760 -2.7158 25 6 8.6362 -6.1623 0.0186 26 6 8.1498 -5.1821 0.8529 27 6 4.2731 -1.6837 1.3054 28 1 -0.3633 -0.0002 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6960 -2.0072 -0.0013 32 1 4.0769 -0.2380 -0.3732 33 1 4.6987 -2.2869 -1.5858 34 1 3.6263 -3.3092 -0.5363 35 1 6.7714 -1.9352 2.6751 36 1 9.0625 -2.7246 2.9589 37 1 10.9384 -3.2450 1.0697 38 1 11.7920 -5.0021 -0.4190 39 1 11.8448 -9.3779 -3.7643 40 1 7.9987 -6.9813 -0.2801 41 1 7.1315 -5.2316 1.2093 42 1 3.6230 -2.3593 1.8614 43 1 4.6939 -0.8947 1.9286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492000595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:55 Heat of formation + Delta-G solvation = -28.613106 kcal Electronic energy + Delta-G solvation = -26562.301411 eV Core-core repulsion = 22574.655787 eV Total energy + Delta-G solvation = -3987.645623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73909 -40.85296 -40.25120 -39.16939 -37.92794 -34.94536 -34.63068 -33.94325 -31.85353 -31.38040 -30.06463 -28.81323 -27.42507 -27.06583 -24.59266 -23.56880 -22.98650 -21.71868 -21.58591 -19.94713 -19.52963 -18.79222 -18.31544 -17.94325 -17.58763 -16.99860 -16.42449 -16.27204 -16.16801 -15.79251 -15.57111 -15.44049 -15.31221 -14.72463 -14.62414 -14.45832 -14.19284 -14.13318 -13.74630 -13.65966 -13.56386 -13.26387 -13.20266 -13.03298 -12.94853 -12.67958 -12.35987 -12.31236 -12.14403 -12.10453 -11.31306 -11.09330 -10.92235 -10.72582 -10.42571 -10.14481 -9.84891 -9.57720 -8.60776 -8.50134 -6.17064 -0.05679 0.67659 1.05607 1.33002 1.44467 1.51469 1.61207 1.70007 2.16256 2.28536 2.51210 2.84708 3.19250 3.24149 3.47983 3.58711 3.87780 3.96628 3.98281 4.09785 4.10704 4.14490 4.40595 4.49880 4.51444 4.56309 4.57518 4.58192 4.73322 4.74406 4.78835 4.89336 5.02210 5.06632 5.19480 5.21608 5.24341 5.42252 5.45923 5.64325 5.70174 5.80911 6.00275 6.21724 6.54508 6.72115 6.94031 7.25691 7.26330 7.75720 8.73406 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002042 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.127171 B =13706.941193 C =14333.949637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.600 6.600 4 N -0.702 5.702 5 C 0.118 3.882 6 C 0.091 3.909 7 N -0.652 5.652 8 C 0.559 3.441 9 O -0.567 6.567 10 C -0.228 4.228 11 C 0.011 3.989 12 C -0.158 4.158 13 C -0.048 4.048 14 C -0.255 4.255 15 C 0.126 3.874 16 O -0.230 6.230 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.025 4.025 20 N -0.920 5.920 21 Si 1.022 2.978 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.253 1.253 25 C -0.218 4.218 26 C 0.004 3.996 27 C 0.095 3.905 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.423 0.577 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.274 0.726 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.275 16.850 13.362 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.480 6.480 4 N -0.356 5.356 5 C 0.011 3.989 6 C -0.033 4.033 7 N -0.388 5.388 8 C 0.353 3.647 9 O -0.447 6.447 10 C -0.248 4.248 11 C -0.008 4.008 12 C -0.159 4.159 13 C -0.066 4.066 14 C -0.274 4.274 15 C 0.075 3.925 16 O -0.137 6.137 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.558 5.558 21 Si 0.841 3.159 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.237 4.237 26 C -0.014 4.014 27 C -0.028 4.028 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.262 0.738 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.454 16.857 12.636 29.363 hybrid contribution 0.590 -0.841 -0.901 1.366 sum -19.864 16.016 11.735 28.086 Atomic orbital electron populations 1.21914 0.87891 1.06222 1.06409 1.21658 0.92303 0.82669 0.73475 1.90737 1.72143 1.33406 1.51745 1.45791 1.05329 1.09836 1.74627 1.22540 0.81269 0.98260 0.96843 1.23410 0.88636 0.98214 0.93006 1.49335 1.10172 1.59541 1.19703 1.18610 0.79484 0.77197 0.89429 1.91017 1.65556 1.42732 1.45431 1.22914 0.97272 1.07985 0.96670 1.22609 0.93591 0.89076 0.95569 1.18881 0.94125 0.97917 1.04975 1.21190 0.94674 0.96461 0.94315 1.21117 1.01141 0.97981 1.07195 1.20029 0.93916 0.88526 0.90036 1.83889 1.27101 1.45174 1.57492 1.21865 0.80964 1.21852 1.24383 0.88066 1.26689 1.06165 0.94644 0.94705 1.70174 1.38361 1.20684 1.26576 0.84544 0.73375 0.79821 0.78165 1.18444 1.19513 1.17673 1.20201 0.94015 1.03464 1.06012 1.20676 0.96906 0.91332 0.92510 1.23722 0.87894 0.95977 0.95255 0.86882 0.89304 0.87237 0.73837 0.87387 0.91788 0.87199 0.81537 0.81021 0.83419 0.86193 0.91737 0.87788 0.86213 0.86712 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.30 71.24 0.73 0.22 16 2 C 0.51 6.14 7.94 87.66 0.70 6.84 16 3 O -0.60 -14.04 16.69 -3.05 -0.05 -14.09 16 4 N -0.70 -5.37 5.38 -441.52 -2.38 -7.74 16 5 C 0.12 1.53 4.63 45.55 0.21 1.74 16 6 C 0.09 1.51 8.38 83.18 0.70 2.20 16 7 N -0.65 -13.42 3.69 -863.07 -3.18 -16.60 16 8 C 0.56 15.95 7.06 86.33 0.61 16.56 16 9 O -0.57 -22.83 13.26 -4.39 -0.06 -22.89 16 10 C -0.23 -4.88 9.71 23.62 0.23 -4.65 16 11 C 0.01 0.25 9.79 23.82 0.23 0.49 16 12 C -0.16 -5.59 4.43 -20.13 -0.09 -5.68 16 13 C -0.05 -1.84 9.78 22.55 0.22 -1.62 16 14 C -0.26 -12.19 9.10 22.35 0.20 -11.98 16 15 C 0.13 6.91 6.65 22.72 0.15 7.06 16 16 O -0.23 -14.83 9.74 -20.25 -0.20 -15.02 16 17 C -0.41 -25.37 9.41 67.94 0.64 -24.73 16 18 H 0.10 5.69 5.33 -2.91 -0.02 5.67 16 19 C -0.02 -1.45 5.49 84.86 0.47 -0.98 16 20 N -0.92 -58.47 13.67 21.62 0.30 -58.17 16 21 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 25 C -0.22 -10.66 9.97 22.34 0.22 -10.43 16 26 C 0.00 0.16 6.74 22.55 0.15 0.31 16 27 C 0.09 1.06 8.15 83.27 0.68 1.74 16 28 H 0.11 0.00 8.14 -2.39 -0.02 -0.01 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.42 0.27 8.76 -92.70 -0.81 -0.54 16 32 H 0.11 2.00 7.45 -2.39 -0.02 1.98 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.29 8.13 -2.38 -0.02 1.27 16 35 H 0.17 2.10 7.98 -2.91 -0.02 2.08 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.12 5.74 5.74 -2.91 -0.02 5.72 16 39 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.10 5.09 8.06 -2.91 -0.02 5.07 16 41 H 0.12 4.24 7.24 -2.91 -0.02 4.22 16 42 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -93.30 372.81 2.75 -90.55 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.24 Total: 20.53 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 6.05 Total: -22.91 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -5.26 Total: -82.51 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.31 Total: -52.01 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -93.30 2.75 -90.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492000595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.938 kcal (2) G-P(sol) polarization free energy of solvation -93.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds