Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00188 * 2 1 4 4 O 1.21724 * 120.00255 * 180.02562 * 3 2 1 5 5 C 1.46261 * 119.99956 * 0.02562 * 3 2 1 6 6 C 1.35021 * 119.99861 * 187.08771 * 5 3 2 7 7 C 1.46964 * 120.00271 * 12.97140 * 6 5 3 8 8 C 1.40013 * 120.10011 * 44.84255 * 7 6 5 9 9 C 1.37601 * 119.89615 * 180.27258 * 8 7 6 10 10 C 1.39170 * 120.10338 * 359.50113 * 9 8 7 11 11 O 1.35570 * 119.90278 * 180.22840 * 10 9 8 12 12 C 1.34783 * 116.99889 * 353.98265 * 11 10 9 13 13 H 1.08001 * 119.99598 * 5.11985 * 12 11 10 14 14 C 1.38709 * 119.99937 * 185.12080 * 12 11 10 15 15 N 1.31505 * 119.99989 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00268 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47101 * 89.99929 * 16 14 12 18 18 H 1.48500 * 109.47330 * 209.99840 * 16 14 12 19 19 H 1.48499 * 109.46961 * 330.00348 * 16 14 12 20 20 C 1.39179 * 120.19966 * 0.25248 * 10 9 8 21 21 C 1.37596 * 120.10495 * 359.97438 * 20 10 9 22 22 C 1.46504 * 119.99977 * 180.02562 * 2 1 3 23 23 H 1.09004 * 110.42980 * 178.91105 * 22 2 1 24 24 C 1.54625 * 110.48572 * 56.22790 * 22 2 1 25 25 C 1.54478 * 101.76102 * 216.52367 * 24 22 2 26 26 N 1.46764 * 105.47736 * 25.41596 * 25 24 22 27 27 C 1.34419 * 111.29595 * 342.98245 * 26 25 24 28 28 O 1.21285 * 124.93876 * 180.36824 * 27 26 25 29 29 H 1.08993 * 109.46943 * 89.99743 * 1 2 3 30 30 H 1.08997 * 109.46664 * 210.00210 * 1 2 3 31 31 H 1.08998 * 109.46880 * 329.99686 * 1 2 3 32 32 H 1.08001 * 119.99711 * 7.07869 * 5 3 2 33 33 H 1.07999 * 119.99649 * 192.97755 * 6 5 3 34 34 H 1.08001 * 120.05572 * 0.02762 * 8 7 6 35 35 H 1.07996 * 119.94850 * 179.77045 * 9 8 7 36 36 H 0.97003 * 120.00469 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.95295 * 180.02562 * 20 10 9 38 38 H 1.07997 * 120.05776 * 180.02562 * 21 20 10 39 39 H 1.08997 * 110.96904 * 334.63858 * 24 22 2 40 40 H 1.08999 * 110.96815 * 98.40596 * 24 22 2 41 41 H 1.09005 * 110.24751 * 266.41335 * 25 24 22 42 42 H 1.09003 * 110.31835 * 144.45443 * 25 24 22 43 43 H 0.97000 * 124.35303 * 162.96238 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3561 1.1672 -0.0005 5 6 1.4076 2.4338 0.0006 6 6 2.0750 3.5987 -0.1437 7 6 3.4775 3.5926 -0.5828 8 6 3.8760 2.7771 -1.6489 9 6 5.1914 2.7704 -2.0529 10 6 6.1230 3.5804 -1.4104 11 8 7.4170 3.5741 -1.8148 12 6 7.7592 2.6733 -2.7571 13 1 7.0004 2.0554 -3.2142 14 6 9.0857 2.5398 -3.1397 15 7 9.4197 1.6605 -4.0588 16 14 10.3979 3.6090 -2.3495 17 1 10.9351 2.9250 -1.1459 18 1 11.4982 3.8405 -3.3196 19 1 9.8037 4.9114 -1.9549 20 6 5.7304 4.3965 -0.3535 21 6 4.4182 4.4063 0.0604 22 6 2.1975 -1.2688 -0.0006 23 1 3.2722 -1.0876 -0.0199 24 6 1.7708 -2.1395 -1.2050 25 6 1.8099 -3.5590 -0.5969 26 7 1.6054 -3.3734 0.8445 27 6 1.8219 -2.0975 1.2080 28 8 1.7289 -1.6724 2.3401 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 0.3339 2.4373 0.1162 33 1 1.5781 4.5349 0.0637 34 1 3.1530 2.1512 -2.1508 35 1 5.5004 2.1389 -2.8726 36 1 10.3473 1.5673 -4.3267 37 1 6.4566 5.0238 0.1420 38 1 4.1144 5.0402 0.8803 39 1 0.7636 -1.8836 -1.5338 40 1 2.4827 -2.0466 -2.0251 41 1 2.7784 -4.0229 -0.7838 42 1 1.0116 -4.1721 -1.0152 43 1 1.3470 -4.0804 1.4562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492291007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = -24.100004 kcal Electronic energy + Delta-G solvation = -27867.981484 eV Core-core repulsion = 23880.531563 eV Total energy + Delta-G solvation = -3987.449921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97850 -39.52336 -38.77946 -36.82012 -36.49672 -35.15757 -33.16796 -32.28788 -30.84617 -30.16845 -28.51021 -27.81032 -26.54322 -25.22419 -23.44934 -22.22302 -21.87904 -21.08296 -19.88167 -18.52608 -17.94931 -17.66750 -17.62490 -17.10943 -16.21461 -16.12527 -15.19406 -14.85301 -14.71714 -14.26991 -14.12921 -14.01846 -13.85771 -13.61897 -13.48849 -13.41467 -13.08219 -12.92139 -12.78871 -12.55210 -12.37995 -12.28884 -12.21215 -12.10488 -11.42232 -11.34656 -10.93625 -10.77465 -10.64424 -10.30025 -10.13772 -9.56934 -9.43694 -9.38743 -9.23205 -8.75056 -8.67099 -8.01051 -7.00475 -6.41137 -4.04854 1.18635 2.21421 2.33341 2.58409 2.86897 3.19053 3.23764 3.28150 3.42247 3.52507 4.09455 4.25300 4.26452 4.53316 4.62098 4.65139 4.78590 4.89826 4.93679 5.10441 5.14184 5.15460 5.25370 5.30633 5.44680 5.56486 5.58787 5.66728 5.68531 5.76779 6.15921 6.19076 6.28171 6.39726 6.50509 6.57939 6.64259 6.66831 6.92400 7.16479 7.28788 7.38077 7.43830 7.67623 7.85351 7.98376 8.07180 8.41661 8.94234 9.58341 10.66294 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.003250 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.915451 B = 8612.662618 C = 9976.731623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.547 3.453 4 O -0.506 6.506 5 C -0.260 4.260 6 C 0.025 3.975 7 C -0.176 4.176 8 C 0.004 3.996 9 C -0.228 4.228 10 C 0.175 3.825 11 O -0.213 6.213 12 C -0.387 4.387 13 H 0.108 0.892 14 C 0.064 3.936 15 N -0.878 5.878 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.205 4.205 21 C -0.048 4.048 22 C 0.111 3.889 23 H 0.139 0.861 24 C -0.144 4.144 25 C 0.102 3.898 26 N -0.734 5.734 27 C 0.509 3.491 28 O -0.519 6.519 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.861 -6.975 4.835 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C 0.339 3.661 4 O -0.381 6.381 5 C -0.281 4.281 6 C 0.006 3.994 7 C -0.177 4.177 8 C -0.015 4.015 9 C -0.247 4.247 10 C 0.122 3.878 11 O -0.118 6.118 12 C -0.462 4.462 13 H 0.125 0.875 14 C -0.140 4.140 15 N -0.515 5.515 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.225 4.225 21 C -0.066 4.066 22 C 0.003 3.997 23 H 0.157 0.843 24 C -0.183 4.183 25 C -0.023 4.023 26 N -0.391 5.391 27 C 0.293 3.707 28 O -0.393 6.393 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.810 -6.599 5.281 21.538 hybrid contribution 0.277 -0.402 0.435 0.653 sum -19.533 -7.000 5.715 21.522 Atomic orbital electron populations 1.21752 0.79674 1.03170 1.01500 1.47496 1.06479 1.04482 1.75441 1.18535 0.87660 0.83827 0.76080 1.90991 1.12992 1.86340 1.47825 1.22693 0.99543 0.92077 1.13743 1.22372 0.93175 0.96627 0.87266 1.18376 0.92690 1.04605 1.01983 1.20609 0.94763 0.92436 0.93658 1.21061 0.93121 1.05379 1.05134 1.19269 0.84213 0.92797 0.91493 1.83503 1.22403 1.53158 1.52695 1.20819 0.95349 1.15237 1.14812 0.87517 1.24477 0.97083 0.96540 0.95868 1.69622 1.19524 1.33235 1.29161 0.86187 0.80135 0.81593 0.79048 1.19837 1.20771 1.18295 1.20009 0.96402 1.05725 1.00340 1.20633 0.92111 0.96438 0.97467 1.21628 1.01141 0.84041 0.92909 0.84328 1.23015 1.04172 0.93028 0.98048 1.22090 1.02584 0.97727 0.79854 1.46162 1.71262 1.11076 1.10606 1.21219 0.75889 0.83325 0.90241 1.90763 1.51031 1.75223 1.22282 0.92404 0.91964 0.90323 0.85625 0.85747 0.88239 0.85185 0.91037 0.86619 0.86939 0.89351 0.88140 0.90426 0.89933 0.75103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.00 59.85 0.54 1.23 16 2 N -0.60 -7.50 2.85 -175.65 -0.50 -8.00 16 3 C 0.55 8.50 6.68 -13.04 -0.09 8.41 16 4 O -0.51 -10.10 11.85 5.17 0.06 -10.04 16 5 C -0.26 -3.34 9.12 -37.50 -0.34 -3.68 16 6 C 0.03 0.34 9.79 -37.19 -0.36 -0.02 16 7 C -0.18 -3.15 4.43 -105.03 -0.47 -3.61 16 8 C 0.00 0.08 6.74 -39.15 -0.26 -0.19 16 9 C -0.23 -5.23 9.14 -39.47 -0.36 -5.59 16 10 C 0.18 4.26 6.66 -38.89 -0.26 4.00 16 11 O -0.21 -5.81 8.57 0.74 0.01 -5.80 16 12 C -0.39 -11.13 9.94 30.91 0.31 -10.82 16 13 H 0.11 3.14 5.42 -52.49 -0.28 2.86 16 14 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 15 N -0.88 -25.52 13.96 55.48 0.77 -24.74 16 16 Si 0.90 22.01 28.62 -169.99 -4.86 17.14 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.21 -4.33 9.97 -39.47 -0.39 -4.72 16 21 C -0.05 -0.88 9.78 -39.15 -0.38 -1.26 16 22 C 0.11 1.33 3.34 -67.94 -0.23 1.10 16 23 H 0.14 2.03 6.97 -51.93 -0.36 1.67 16 24 C -0.14 -1.07 6.76 -25.10 -0.17 -1.24 16 25 C 0.10 0.58 7.78 -3.12 -0.02 0.56 16 26 N -0.73 -6.00 6.24 -59.20 -0.37 -6.37 16 27 C 0.51 6.40 7.01 -10.86 -0.08 6.32 16 28 O -0.52 -8.84 18.02 5.55 0.10 -8.74 16 29 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 30 H 0.06 0.51 7.26 -51.93 -0.38 0.13 16 31 H 0.08 0.60 6.01 -51.93 -0.31 0.29 16 32 H 0.13 1.16 6.14 -52.49 -0.32 0.84 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.10 1.80 7.24 -52.49 -0.38 1.42 16 35 H 0.13 3.11 5.62 -52.49 -0.30 2.82 16 36 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.09 0.55 6.93 -51.93 -0.36 0.19 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.41 2.65 8.96 -40.82 -0.37 2.28 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -36.31 358.45 -7.20 -43.50 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.14 Total: 5.45 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.67 Total: -7.80 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.10 Total: -39.12 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.17 Total: -24.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.31 -7.20 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492291007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.405 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds