Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 120.00181 * 2 1 4 4 O 1.21551 * 119.99709 * 359.97438 * 3 2 1 5 5 C 1.47876 * 120.00687 * 180.02562 * 3 2 1 6 6 C 1.39664 * 119.97931 * 179.97438 * 5 3 2 7 7 C 1.37651 * 120.02524 * 179.72302 * 6 5 3 8 8 C 1.39881 * 119.97704 * 0.25959 * 7 6 5 9 9 C 1.47259 * 120.02640 * 180.02562 * 8 7 6 10 10 C 1.34726 * 119.99715 * 311.94463 * 9 8 7 11 11 C 1.46616 * 120.00205 * 348.75160 * 10 9 8 12 12 O 1.21664 * 120.00098 * 353.30109 * 11 10 9 13 13 N 1.34784 * 119.99714 * 173.30817 * 11 10 9 14 14 C 1.47057 * 136.06034 * 359.62486 * 13 11 10 15 15 C 1.53755 * 87.89173 * 152.96548 * 14 13 11 16 16 O 1.42894 * 114.39556 * 272.67849 * 15 14 13 17 17 C 1.50697 * 114.26800 * 139.78851 * 15 14 13 18 18 H 1.08005 * 119.99988 * 266.47605 * 17 15 14 19 19 C 1.37874 * 119.99828 * 86.48018 * 17 15 14 20 20 N 1.31517 * 120.00180 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00024 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47047 * 59.99915 * 21 19 17 23 23 H 1.48501 * 109.47086 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47049 * 300.00032 * 21 19 17 25 25 C 1.47064 * 136.05449 * 179.97438 * 13 11 10 26 26 C 1.39890 * 119.94876 * 359.97438 * 8 7 6 27 27 C 1.37650 * 119.97048 * 0.02562 * 26 8 7 28 28 H 1.08997 * 109.47438 * 299.99733 * 1 2 3 29 29 H 1.09001 * 109.47814 * 60.00153 * 1 2 3 30 30 H 1.09007 * 109.47058 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00605 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.98849 * 0.02562 * 6 5 3 33 33 H 1.08005 * 120.01082 * 180.28000 * 7 6 5 34 34 H 1.07998 * 120.00051 * 131.95287 * 9 8 7 35 35 H 1.08010 * 119.99791 * 168.74287 * 10 9 8 36 36 H 1.09005 * 113.47169 * 267.69795 * 14 13 11 37 37 H 1.09005 * 113.47228 * 38.13419 * 14 13 11 38 38 H 0.96694 * 114.00042 * 273.58342 * 16 15 14 39 39 H 0.96994 * 119.99945 * 180.02562 * 20 19 17 40 40 H 1.09002 * 113.46953 * 321.86632 * 25 13 11 41 41 H 1.09007 * 113.46858 * 92.24009 * 25 13 11 42 42 H 1.07994 * 120.01163 * 179.97438 * 26 8 7 43 43 H 1.08002 * 119.98105 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6176 1.1673 -0.0006 6 6 4.3154 2.3771 -0.0011 7 6 5.6919 2.3784 0.0041 8 6 6.3919 1.1673 0.0045 9 6 7.8644 1.1674 0.0106 10 6 8.5416 1.9491 -0.8527 11 6 7.8342 2.6078 -1.9552 12 8 6.6629 2.3538 -2.1644 13 7 8.4816 3.4945 -2.7370 14 6 9.8399 4.0543 -2.8029 15 6 9.6159 4.2722 -4.3083 16 8 9.9506 3.1474 -5.1236 17 6 10.1644 5.5735 -4.8342 18 1 9.5271 6.4434 -4.8938 19 6 11.4798 5.6535 -5.2395 20 7 12.2560 4.5942 -5.1666 21 14 12.1597 7.2664 -5.8921 22 1 12.0427 8.3127 -4.8448 23 1 13.5879 7.0894 -6.2584 24 1 11.3888 7.6789 -7.0924 25 6 8.1388 4.3325 -3.8959 26 6 5.6919 -0.0439 0.0001 27 6 4.3155 -0.0426 -0.0051 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 3.7748 3.3121 -0.0007 33 1 6.2312 3.3141 0.0083 34 1 8.4016 0.5407 0.7071 35 1 9.6056 2.0908 -0.7326 36 1 9.9546 4.9822 -2.2424 37 1 10.6205 3.3271 -2.5794 38 1 10.8818 3.1121 -5.3819 39 1 13.1815 4.6506 -5.4514 40 1 7.4702 3.8423 -4.6035 41 1 7.8036 5.3335 -3.6238 42 1 6.2314 -0.9795 -0.0001 43 1 3.7749 -0.9776 -0.0081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492666114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -46.059032 kcal Electronic energy + Delta-G solvation = -27151.703975 eV Core-core repulsion = 23163.301840 eV Total energy + Delta-G solvation = -3988.402136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46665 -41.07978 -39.83958 -38.66419 -35.90639 -35.79254 -34.82041 -34.12991 -31.96407 -31.61457 -30.22533 -27.93949 -27.21384 -26.83164 -25.07248 -23.41612 -23.06948 -21.73002 -21.04210 -19.72395 -19.36164 -19.06640 -18.18525 -17.32785 -17.17806 -16.85073 -16.38215 -16.30524 -16.02355 -15.86210 -15.78896 -15.35248 -15.10512 -14.68577 -14.52870 -14.46149 -14.14286 -14.03870 -13.93090 -13.64668 -13.40788 -13.33143 -13.12704 -12.78481 -12.75690 -12.61900 -12.23130 -12.17230 -12.12806 -11.38909 -11.17974 -11.02768 -10.80827 -10.64257 -10.25723 -10.23772 -9.91025 -9.47820 -9.24133 -8.27931 -6.44959 -0.50784 0.44868 0.56128 1.47848 1.50090 1.57326 1.82570 2.05039 2.17947 2.32712 2.41232 2.90577 2.93956 3.53129 3.63242 3.79126 3.83854 3.85836 3.98496 4.14842 4.34263 4.39890 4.46080 4.48325 4.54487 4.59108 4.61397 4.75684 4.82952 4.85519 4.91066 4.91775 4.98826 5.07094 5.19626 5.25218 5.32135 5.34957 5.41945 5.61420 5.72214 5.90750 5.92183 6.45628 6.60289 6.92551 7.12771 7.21643 7.29537 7.48798 8.77935 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002320 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.809180 B =12063.495820 C =12630.860428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.553 3.447 4 O -0.587 6.587 5 C -0.152 4.152 6 C -0.089 4.089 7 C -0.073 4.073 8 C -0.041 4.041 9 C -0.021 4.021 10 C -0.202 4.202 11 C 0.546 3.454 12 O -0.577 6.577 13 N -0.633 5.633 14 C 0.087 3.913 15 C 0.219 3.781 16 O -0.586 6.586 17 C -0.554 4.554 18 H 0.072 0.928 19 C 0.033 3.967 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.276 1.276 25 C 0.106 3.894 26 C -0.110 4.110 27 C -0.083 4.083 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.418 0.582 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.389 0.611 39 H 0.277 0.723 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.165 0.835 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -12.876 14.104 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.342 3.658 4 O -0.469 6.469 5 C -0.155 4.155 6 C -0.109 4.109 7 C -0.091 4.091 8 C -0.041 4.041 9 C -0.040 4.040 10 C -0.223 4.223 11 C 0.340 3.660 12 O -0.461 6.461 13 N -0.365 5.365 14 C -0.036 4.036 15 C 0.178 3.822 16 O -0.399 6.399 17 C -0.592 4.592 18 H 0.090 0.910 19 C -0.168 4.168 20 N -0.557 5.557 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.201 1.201 25 C -0.017 4.017 26 C -0.128 4.128 27 C -0.101 4.101 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.256 0.744 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.206 0.794 35 H 0.168 0.832 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.183 0.817 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.678 -12.646 14.152 22.284 hybrid contribution 1.222 1.114 -0.852 1.860 sum -10.456 -11.532 13.301 20.475 Atomic orbital electron populations 1.21740 0.78089 1.04697 1.01524 1.45619 1.08658 1.08138 1.74384 1.18597 0.87730 0.84053 0.75397 1.90731 1.70875 1.33154 1.52132 1.19946 0.92212 0.95190 1.08121 1.20992 0.94087 0.97741 0.98032 1.20991 0.93481 0.97503 0.97163 1.19416 0.93932 0.93732 0.97062 1.22799 0.91626 0.93593 0.95979 1.23088 1.01758 1.01247 0.96164 1.18771 0.85769 0.78866 0.82604 1.90818 1.17038 1.65480 1.72721 1.49752 1.15626 1.39691 1.31439 1.24012 0.82097 0.97115 1.00335 1.19845 0.90091 0.85356 0.86934 1.86029 1.35001 1.47645 1.71255 1.21623 0.96783 0.96124 1.44643 0.90992 1.25756 0.96624 1.00381 0.94006 1.69310 1.08112 1.30552 1.47710 0.85423 0.77068 0.79226 0.78813 1.19176 1.20630 1.20145 1.23269 0.98539 0.94144 0.85728 1.21513 0.94066 0.97736 0.99472 1.21436 0.94569 0.96873 0.97230 0.92830 0.93436 0.86308 0.74352 0.87050 0.87781 0.79385 0.83171 0.88969 0.91510 0.75462 0.91275 0.93365 0.88358 0.81723 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.70 127.77 1.37 2.47 16 2 N -0.72 -11.98 5.66 -487.46 -2.76 -14.74 16 3 C 0.55 15.06 7.77 86.80 0.67 15.73 16 4 O -0.59 -21.18 16.33 -3.87 -0.06 -21.25 16 5 C -0.15 -4.08 5.88 -20.03 -0.12 -4.19 16 6 C -0.09 -2.86 9.57 22.48 0.22 -2.65 16 7 C -0.07 -2.28 6.76 22.53 0.15 -2.12 16 8 C -0.04 -1.06 4.34 -20.11 -0.09 -1.14 16 9 C -0.02 -0.45 9.77 23.84 0.23 -0.22 16 10 C -0.20 -5.72 9.76 23.65 0.23 -5.49 16 11 C 0.55 21.37 7.20 86.43 0.62 21.99 16 12 O -0.58 -25.36 13.25 -4.24 -0.06 -25.41 16 13 N -0.63 -26.52 3.69 -863.25 -3.18 -29.70 16 14 C 0.09 3.64 7.77 83.26 0.65 4.29 16 15 C 0.22 10.54 1.58 -11.13 -0.02 10.52 16 16 O -0.59 -30.78 13.55 -148.98 -2.02 -32.79 16 17 C -0.55 -27.52 8.70 25.60 0.22 -27.30 16 18 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 19 C 0.03 1.60 5.39 84.65 0.46 2.06 16 20 N -0.92 -45.58 11.01 21.45 0.24 -45.34 16 21 Si 0.97 38.98 29.54 68.60 2.03 41.01 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 25 C 0.11 4.75 8.02 83.16 0.67 5.42 16 26 C -0.11 -2.19 9.77 22.53 0.22 -1.97 16 27 C -0.08 -1.58 9.52 22.48 0.21 -1.37 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.42 3.83 6.85 -92.71 -0.63 3.20 16 32 H 0.11 3.83 7.63 -2.91 -0.02 3.81 16 33 H 0.10 3.43 7.44 -2.91 -0.02 3.41 16 34 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.15 3.65 7.99 -2.91 -0.02 3.63 16 36 H 0.09 3.60 8.10 -2.38 -0.02 3.58 16 37 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 38 H 0.39 20.56 6.32 -74.06 -0.47 20.09 16 39 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 40 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 4.04 8.10 -2.38 -0.02 4.02 16 42 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.17 1.57 6.38 -2.91 -0.02 1.55 16 Total: -1.00 -72.32 368.64 -0.16 -72.48 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.04 Total: 39.72 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.70 Total: 16.02 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -5.71 Total: -89.78 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -2.14 Total: -79.45 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -72.32 -0.16 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492666114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.423 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds