Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33872 * 122.76045 * 2 1 4 4 O 1.21221 * 125.40174 * 359.95661 * 3 2 1 5 5 C 1.51321 * 109.20230 * 179.97438 * 3 2 1 6 6 C 1.54223 * 103.55661 * 359.97438 * 5 3 2 7 7 H 1.08997 * 110.60361 * 241.32606 * 6 5 3 8 8 N 1.46497 * 110.60568 * 118.51982 * 6 5 3 9 9 C 1.34781 * 120.00204 * 155.00057 * 8 6 5 10 10 O 1.21276 * 119.99886 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99849 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.46734 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46967 * 305.95412 * 12 11 9 14 14 C 1.50696 * 109.47320 * 65.95685 * 12 11 9 15 15 H 1.07993 * 119.99989 * 27.29007 * 14 12 11 16 16 C 1.37879 * 119.99764 * 207.29003 * 14 12 11 17 17 N 1.31508 * 120.00231 * 353.72706 * 16 14 12 18 18 Si 1.86803 * 119.99789 * 173.73094 * 16 14 12 19 19 H 1.48494 * 109.46938 * 269.99542 * 18 16 14 20 20 H 1.48499 * 109.47138 * 29.99925 * 18 16 14 21 21 H 1.48502 * 109.46765 * 150.00011 * 18 16 14 22 22 C 1.50697 * 109.47083 * 185.96082 * 12 11 9 23 23 C 1.38236 * 119.99608 * 293.61790 * 22 12 11 24 24 C 1.38235 * 119.99796 * 179.80949 * 23 22 12 25 25 C 1.38234 * 120.00188 * 0.42023 * 24 23 22 26 26 C 1.38235 * 119.99739 * 359.80596 * 25 24 23 27 27 C 1.38233 * 120.00215 * 113.88639 * 22 12 11 28 28 C 1.33874 * 122.76213 * 179.97438 * 2 1 3 29 29 O 1.21230 * 125.39518 * 0.04106 * 28 2 1 30 30 H 1.09004 * 109.46607 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46638 * 119.97306 * 1 2 3 32 32 H 1.08998 * 109.47008 * 239.97595 * 1 2 3 33 33 H 1.09001 * 110.60264 * 241.47935 * 5 3 2 34 34 H 1.09004 * 110.73729 * 118.58314 * 5 3 2 35 35 H 0.97005 * 120.00058 * 334.99561 * 8 6 5 36 36 H 1.08999 * 109.46957 * 59.99938 * 11 9 8 37 37 H 1.09001 * 109.46928 * 299.99856 * 11 9 8 38 38 H 0.97010 * 120.00178 * 354.44065 * 17 16 14 39 39 H 1.08000 * 119.99986 * 359.97438 * 23 22 12 40 40 H 1.08007 * 119.99896 * 180.20712 * 24 23 22 41 41 H 1.08002 * 120.00107 * 179.79533 * 25 24 23 42 42 H 1.08006 * 119.99805 * 179.97438 * 26 25 24 43 43 H 1.07992 * 120.00252 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7386 2.2510 -0.0007 5 6 3.6605 0.7710 0.0006 6 6 3.6605 -0.7712 0.0017 7 1 4.1498 -1.1542 0.8972 8 7 4.3155 -1.2876 -1.2026 9 6 4.8723 -2.5150 -1.1933 10 8 4.8315 -3.1917 -0.1877 11 6 5.5457 -3.0464 -2.4324 12 6 6.0890 -4.4496 -2.1556 13 1 6.7295 -4.4238 -1.2740 14 6 4.9402 -5.3946 -1.9145 15 1 3.9763 -5.1975 -2.3598 16 6 5.1197 -6.5108 -1.1252 17 7 6.3199 -6.8182 -0.6843 18 14 3.6581 -7.5864 -0.6823 19 1 3.0483 -7.0975 0.5803 20 1 2.6521 -7.5281 -1.7730 21 1 4.1122 -8.9888 -0.5021 22 6 6.8876 -4.9223 -3.3429 23 6 6.2563 -5.1628 -4.5490 24 6 6.9895 -5.5926 -5.6392 25 6 8.3525 -5.7903 -5.5210 26 6 8.9830 -5.5543 -4.3137 27 6 8.2505 -5.1208 -3.2245 28 6 2.1895 -1.1258 0.0005 29 8 1.7385 -2.2510 0.0003 30 1 -0.3633 1.0277 0.0005 31 1 -0.3632 -0.5134 -0.8902 32 1 -0.3633 -0.5142 0.8898 33 1 4.1473 1.1549 0.8972 34 1 4.1504 1.1545 -0.8944 35 1 4.3484 -0.7462 -2.0069 36 1 6.3674 -2.3865 -2.7108 37 1 4.8234 -3.0910 -3.2476 38 1 7.0905 -6.3078 -0.9790 39 1 5.1907 -5.0123 -4.6402 40 1 6.4968 -5.7773 -6.5824 41 1 8.9248 -6.1294 -6.3719 42 1 10.0479 -5.7092 -4.2213 43 1 8.7430 -4.9367 -2.2812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521066749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = -70.732930 kcal Electronic energy + Delta-G solvation = -28060.067953 eV Core-core repulsion = 24070.595877 eV Total energy + Delta-G solvation = -3989.472076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12480 -39.33823 -38.68830 -38.25495 -36.09511 -35.05911 -34.18549 -31.93217 -31.19220 -30.13540 -28.99011 -27.23874 -26.16572 -24.80545 -23.03691 -22.31093 -21.69309 -20.72505 -19.80491 -19.61034 -17.62434 -17.32323 -17.01356 -16.66592 -16.38117 -15.82298 -15.48029 -15.15619 -14.68673 -14.46116 -14.23255 -14.18693 -13.82475 -13.63628 -13.39108 -13.15553 -12.93347 -12.82769 -12.79879 -12.45515 -12.33301 -12.12325 -11.89804 -11.52949 -11.07231 -10.91565 -10.67811 -10.45411 -10.37929 -10.15083 -10.02820 -9.98166 -9.72890 -9.22855 -8.95744 -8.62771 -8.27694 -8.16367 -7.66614 -6.21922 -3.91360 1.27912 2.16454 2.21004 2.26119 2.42151 3.26018 3.33203 3.54531 3.60322 3.72460 3.85638 4.02010 4.07903 4.59473 4.68266 4.70091 4.91920 5.07103 5.17707 5.19150 5.25470 5.39890 5.44439 5.57635 5.61004 5.65001 5.73468 5.92151 6.00409 6.12702 6.29015 6.37623 6.40915 6.57532 6.62989 6.75516 6.89758 7.07486 7.17081 7.20224 7.34449 7.59479 7.69820 7.70830 7.83223 8.21163 8.52777 8.78667 8.98212 9.77161 11.17597 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.003588 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.041821 B = 7801.388602 C = 9086.091062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.578 5.578 3 C 0.531 3.469 4 O -0.488 6.488 5 C -0.163 4.163 6 C 0.120 3.880 7 H 0.140 0.860 8 N -0.733 5.733 9 C 0.515 3.485 10 O -0.478 6.478 11 C -0.113 4.113 12 C 0.072 3.928 13 H 0.051 0.949 14 C -0.567 4.567 15 H 0.046 0.954 16 C 0.035 3.965 17 N -0.907 5.907 18 Si 1.061 2.939 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.288 1.288 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 C 0.505 3.495 29 O -0.443 6.443 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 15.819 -3.350 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.320 3.680 4 O -0.361 6.361 5 C -0.203 4.203 6 C 0.010 3.990 7 H 0.157 0.843 8 N -0.391 5.391 9 C 0.302 3.698 10 O -0.346 6.346 11 C -0.154 4.154 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.605 4.605 15 H 0.064 0.936 16 C -0.171 4.171 17 N -0.542 5.542 18 Si 0.891 3.109 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.214 1.214 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.148 4.148 28 C 0.290 3.710 29 O -0.308 6.308 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.084 13.867 -1.685 14.554 hybrid contribution 0.185 1.446 -1.344 1.983 sum -3.899 15.314 -3.029 16.090 Atomic orbital electron populations 1.21933 0.77255 1.04475 1.03826 1.46771 1.09706 1.09463 1.66404 1.20704 0.89951 0.83732 0.73590 1.90769 1.77781 1.21237 1.46296 1.22828 0.94227 0.95171 1.08114 1.21432 0.90164 0.92862 0.94516 0.84295 1.46141 1.60160 1.19622 1.13222 1.21060 0.77921 0.79332 0.91488 1.90791 1.55148 1.54837 1.33861 1.21674 0.99412 0.99710 0.94568 1.17880 0.95714 0.89743 0.91361 0.93093 1.21558 0.95185 1.09464 1.34279 0.93581 1.25538 1.01525 0.96780 0.93259 1.70712 0.99037 1.41593 1.42851 0.83661 0.74852 0.75959 0.76457 1.21348 1.21710 1.21404 1.20831 0.92654 0.94378 0.95544 1.20937 0.99426 0.99525 0.92492 1.21023 0.94249 1.01173 0.98392 1.20832 0.94918 1.03890 0.97348 1.20969 0.98966 1.00794 0.93582 1.21073 0.94298 1.01532 0.97926 1.21613 0.90483 0.83930 0.74972 1.90863 1.77222 1.20968 1.41779 0.88969 0.90500 0.90458 0.85116 0.85499 0.76533 0.91241 0.90038 0.91814 0.86659 0.87450 0.87581 0.87442 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.65 59.85 0.64 1.25 16 2 N -0.58 -6.33 2.95 -122.72 -0.36 -6.69 16 3 C 0.53 5.24 8.08 -11.08 -0.09 5.15 16 4 O -0.49 -6.00 17.23 5.61 0.10 -5.90 16 5 C -0.16 -1.15 6.79 -26.94 -0.18 -1.33 16 6 C 0.12 1.36 3.45 -68.15 -0.24 1.13 16 7 H 0.14 1.70 7.55 -51.93 -0.39 1.31 16 8 N -0.73 -9.21 5.12 -54.01 -0.28 -9.48 16 9 C 0.52 9.43 7.58 -10.98 -0.08 9.35 16 10 O -0.48 -11.31 14.66 5.56 0.08 -11.23 16 11 C -0.11 -2.05 4.97 -27.88 -0.14 -2.19 16 12 C 0.07 1.67 1.24 -92.93 -0.11 1.55 16 13 H 0.05 1.33 6.55 -51.93 -0.34 0.99 16 14 C -0.57 -15.32 6.31 -34.44 -0.22 -15.54 16 15 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 16 C 0.03 1.00 5.45 -17.82 -0.10 0.90 16 17 N -0.91 -27.53 13.56 55.43 0.75 -26.78 16 18 Si 1.06 26.90 29.91 -169.99 -5.08 21.82 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C -0.03 -0.72 4.55 -104.63 -0.48 -1.19 16 23 C -0.11 -2.11 8.92 -39.58 -0.35 -2.46 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 26 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 27 C -0.13 -2.62 9.27 -39.58 -0.37 -2.99 16 28 C 0.51 6.98 7.72 -11.09 -0.09 6.89 16 29 O -0.44 -8.35 17.68 5.60 0.10 -8.25 16 30 H 0.09 0.74 7.41 -51.93 -0.38 0.35 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.13 0.62 7.71 -51.93 -0.40 0.22 16 35 H 0.40 3.55 8.39 -40.82 -0.34 3.21 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.39 8.04 -51.93 -0.42 0.98 16 38 H 0.27 8.03 6.32 -40.82 -0.26 7.78 16 39 H 0.12 2.27 7.88 -52.49 -0.41 1.86 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.11 2.18 7.96 -52.49 -0.42 1.77 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -37.32 369.90 -7.65 -44.97 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.53 Total: 3.75 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.00 Total: -7.77 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.11 Total: -42.96 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.28 Total: -25.38 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -5.08 Total: 21.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.32 -7.65 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521066749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.768 kcal (2) G-P(sol) polarization free energy of solvation -37.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds