Wall clock time and date at job start Tue Mar 31 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.33881 * 122.76319 * 2 1 4 4 O 1.21230 * 125.39272 * 359.97438 * 3 2 1 5 5 C 1.51312 * 109.20854 * 179.84099 * 3 2 1 6 6 C 1.54231 * 103.55246 * 0.39410 * 5 3 2 7 7 H 1.09006 * 110.59787 * 241.25401 * 6 5 3 8 8 N 1.46499 * 110.60988 * 118.29567 * 6 5 3 9 9 C 1.34768 * 120.00375 * 159.40606 * 8 6 5 10 10 O 1.21288 * 119.99748 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00399 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.47516 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47224 * 55.00302 * 12 11 9 14 14 C 1.50699 * 109.47433 * 295.00473 * 12 11 9 15 15 H 1.07997 * 119.99981 * 325.84379 * 14 12 11 16 16 C 1.37879 * 120.00151 * 145.85151 * 14 12 11 17 17 N 1.31514 * 120.00055 * 6.11515 * 16 14 12 18 18 Si 1.86803 * 119.99807 * 186.11696 * 16 14 12 19 19 H 1.48501 * 109.47161 * 89.99769 * 18 16 14 20 20 H 1.48506 * 109.46911 * 209.99404 * 18 16 14 21 21 H 1.48489 * 109.47351 * 329.99740 * 18 16 14 22 22 C 1.50699 * 109.47235 * 175.00057 * 12 11 9 23 23 C 1.38232 * 119.99809 * 63.46352 * 22 12 11 24 24 C 1.38240 * 120.00041 * 179.80792 * 23 22 12 25 25 C 1.38238 * 119.99643 * 0.41963 * 24 23 22 26 26 C 1.38236 * 120.00218 * 359.80899 * 25 24 23 27 27 C 1.38235 * 119.99948 * 0.02562 * 26 25 24 28 28 C 1.33880 * 122.76684 * 180.29541 * 2 1 3 29 29 O 1.21233 * 125.39147 * 0.02562 * 28 2 1 30 30 H 1.08993 * 109.47343 * 269.70644 * 1 2 3 31 31 H 1.09003 * 109.47120 * 149.70872 * 1 2 3 32 32 H 1.08997 * 109.47504 * 29.70821 * 1 2 3 33 33 H 1.08996 * 110.79892 * 241.78320 * 5 3 2 34 34 H 1.09008 * 110.54500 * 118.87883 * 5 3 2 35 35 H 0.97002 * 119.99771 * 339.40898 * 8 6 5 36 36 H 1.08996 * 109.47012 * 300.00638 * 11 9 8 37 37 H 1.09007 * 109.46637 * 60.00474 * 11 9 8 38 38 H 0.96993 * 120.00005 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00263 * 359.97438 * 23 22 12 40 40 H 1.07996 * 120.00276 * 180.20661 * 24 23 22 41 41 H 1.07996 * 119.99934 * 179.78872 * 25 24 23 42 42 H 1.07995 * 120.00353 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.00353 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7384 2.2511 -0.0004 5 6 3.6604 0.7712 0.0040 6 6 3.6604 -0.7711 -0.0040 7 1 4.1476 -1.1592 0.8905 8 7 4.3151 -1.2805 -1.2115 9 6 4.7934 -2.5402 -1.2384 10 8 4.6821 -3.2520 -0.2626 11 6 5.4664 -3.0645 -2.4806 12 6 5.9138 -4.5088 -2.2475 13 1 5.0596 -5.1072 -1.9306 14 6 6.9737 -4.5398 -1.1766 15 1 7.6777 -3.7255 -1.0899 16 6 7.0446 -5.6078 -0.3075 17 7 6.2677 -6.6538 -0.4863 18 14 8.2442 -5.5691 1.1239 19 1 7.5814 -4.9681 2.3092 20 1 8.6749 -6.9532 1.4465 21 1 9.4299 -4.7552 0.7543 22 6 6.4756 -5.0734 -3.5268 23 6 7.6132 -4.5210 -4.0851 24 6 8.1308 -5.0414 -5.2565 25 6 7.5059 -6.1087 -5.8741 26 6 6.3657 -6.6580 -5.3183 27 6 5.8500 -6.1398 -4.1451 28 6 2.1895 -1.1258 -0.0058 29 8 1.7385 -2.2510 -0.0120 30 1 -0.3634 -0.0053 1.0276 31 1 -0.3633 -0.8874 -0.5184 32 1 -0.3634 0.8925 -0.5093 33 1 4.1475 1.1502 0.9024 34 1 4.1500 1.1594 -0.8893 35 1 4.4045 -0.7111 -1.9917 36 1 4.7659 -3.0308 -3.3150 37 1 6.3354 -2.4479 -2.7107 38 1 6.3174 -7.4050 0.1253 39 1 8.0990 -3.6846 -3.6048 40 1 9.0215 -4.6121 -5.6910 41 1 7.9084 -6.5131 -6.7911 42 1 5.8773 -7.4915 -5.8010 43 1 4.9590 -6.5687 -3.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521066751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:22 Heat of formation + Delta-G solvation = -67.283093 kcal Electronic energy + Delta-G solvation = -27959.391723 eV Core-core repulsion = 23970.069243 eV Total energy + Delta-G solvation = -3989.322480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10129 -39.22252 -38.61986 -38.12575 -36.07119 -34.96864 -33.91491 -31.87052 -31.31051 -30.00499 -28.85056 -27.23568 -26.24282 -25.15371 -22.96389 -22.23965 -21.62396 -20.65019 -19.69962 -19.33782 -17.54201 -17.28695 -16.84053 -16.58177 -16.26535 -15.71959 -15.37975 -15.12632 -14.49763 -14.46202 -14.30720 -14.16564 -13.90836 -13.72560 -13.35336 -13.05934 -12.91063 -12.81144 -12.58204 -12.35493 -12.17878 -11.94169 -11.79236 -11.61800 -10.96650 -10.86150 -10.73305 -10.57525 -10.36085 -10.25894 -10.06891 -9.97590 -9.46638 -9.14263 -8.95528 -8.86235 -8.34393 -8.04229 -7.60952 -5.93482 -3.93839 1.29681 2.27725 2.29083 2.34174 2.44865 3.36366 3.39422 3.40140 3.43899 3.44927 3.89696 4.06329 4.11353 4.51437 4.73984 4.75742 4.92892 5.06028 5.21010 5.26722 5.28431 5.40037 5.43223 5.66330 5.71620 5.73053 5.84188 6.05059 6.13986 6.27612 6.41473 6.47430 6.52759 6.60960 6.77770 6.90445 7.03997 7.09223 7.31408 7.44419 7.51821 7.60711 7.81150 7.85750 7.95012 8.06005 8.37034 8.91698 9.06668 9.68583 11.16688 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003501 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.736475 B = 7996.036864 C = 9083.223801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.578 5.578 3 C 0.531 3.469 4 O -0.488 6.488 5 C -0.163 4.163 6 C 0.121 3.879 7 H 0.138 0.862 8 N -0.735 5.735 9 C 0.513 3.487 10 O -0.472 6.472 11 C -0.119 4.119 12 C 0.079 3.921 13 H 0.073 0.927 14 C -0.495 4.495 15 H 0.051 0.949 16 C 0.079 3.921 17 N -0.879 5.879 18 Si 0.886 3.114 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.021 4.021 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 C 0.507 3.493 29 O -0.448 6.448 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 13.894 -4.206 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.324 5.324 3 C 0.320 3.680 4 O -0.360 6.360 5 C -0.203 4.203 6 C 0.011 3.989 7 H 0.155 0.845 8 N -0.394 5.394 9 C 0.300 3.700 10 O -0.340 6.340 11 C -0.159 4.159 12 C 0.060 3.940 13 H 0.091 0.909 14 C -0.533 4.533 15 H 0.069 0.931 16 C -0.124 4.124 17 N -0.516 5.516 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.021 4.021 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.137 4.137 28 C 0.293 3.707 29 O -0.314 6.314 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.291 13.053 -3.381 14.879 hybrid contribution 0.645 0.120 0.516 0.834 sum -5.646 13.174 -2.865 14.616 Atomic orbital electron populations 1.21917 0.77328 1.04561 1.03638 1.46778 1.09664 1.09503 1.66407 1.20717 0.89943 0.83697 0.73636 1.90773 1.77831 1.21256 1.46139 1.22816 0.94150 0.95177 1.08155 1.21415 0.89999 0.92915 0.94558 0.84473 1.46197 1.62088 1.16396 1.14687 1.21103 0.77769 0.79865 0.91302 1.90812 1.52495 1.55249 1.35462 1.21798 0.99258 1.01624 0.93259 1.17849 0.98399 0.88446 0.89305 0.90897 1.20668 1.14558 1.05147 1.12888 0.93061 1.24814 0.95251 0.95348 0.97001 1.69908 1.38644 1.06076 1.36930 0.86704 0.81194 0.77025 0.83638 1.20659 1.21531 1.20114 1.20715 0.93564 0.93895 0.93957 1.20939 0.96621 1.00771 0.95026 1.20974 0.99564 0.97607 0.96873 1.20796 0.97542 0.98627 1.00416 1.20987 0.96953 0.99762 0.96916 1.21101 1.00506 0.97344 0.94723 1.21655 0.90565 0.83890 0.74637 1.90835 1.77278 1.21024 1.42237 0.90991 0.89478 0.89589 0.85071 0.85492 0.76575 0.91475 0.90193 0.93081 0.86882 0.87684 0.87832 0.87657 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.59 59.84 0.63 1.23 16 2 N -0.58 -6.25 2.95 -122.74 -0.36 -6.61 16 3 C 0.53 5.27 8.08 -11.08 -0.09 5.18 16 4 O -0.49 -6.04 17.47 5.60 0.10 -5.94 16 5 C -0.16 -1.18 6.79 -26.94 -0.18 -1.37 16 6 C 0.12 1.39 3.37 -68.14 -0.23 1.16 16 7 H 0.14 1.73 7.69 -51.93 -0.40 1.33 16 8 N -0.73 -9.27 5.15 -54.01 -0.28 -9.54 16 9 C 0.51 9.42 7.57 -10.99 -0.08 9.34 16 10 O -0.47 -11.23 14.71 5.55 0.08 -11.15 16 11 C -0.12 -2.15 4.95 -27.89 -0.14 -2.29 16 12 C 0.08 1.83 1.67 -92.93 -0.16 1.68 16 13 H 0.07 1.98 6.98 -51.93 -0.36 1.62 16 14 C -0.50 -12.87 6.37 -34.44 -0.22 -13.08 16 15 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 17 N -0.88 -25.66 12.87 55.43 0.71 -24.95 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 23 C -0.12 -2.26 8.86 -39.58 -0.35 -2.61 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.16 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 27 C -0.12 -2.48 9.67 -39.58 -0.38 -2.87 16 28 C 0.51 6.87 7.71 -11.09 -0.09 6.78 16 29 O -0.45 -8.13 17.48 5.60 0.10 -8.04 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.79 7.83 -51.93 -0.41 0.39 16 32 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 33 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 0.65 7.66 -51.92 -0.40 0.25 16 35 H 0.40 3.53 8.31 -40.82 -0.34 3.19 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 2.10 7.76 -52.49 -0.41 1.69 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.42 7.95 -52.49 -0.42 2.01 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -35.80 371.98 -7.76 -43.56 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.62 Total: 4.47 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.07 Total: -4.21 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.07 Total: -41.10 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.28 Total: -25.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.80 -7.76 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521066751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.721 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds