Wall clock time and date at job start Tue Mar 31 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57822 * 2 1 4 4 O 1.42101 * 108.57738 * 228.97985 * 2 1 3 5 5 C 1.81393 * 101.92316 * 114.49287 * 2 1 3 6 6 C 1.53002 * 115.55191 * 303.70994 * 5 2 1 7 7 N 1.46501 * 109.47136 * 272.96050 * 6 5 2 8 8 C 1.34780 * 120.00336 * 175.08496 * 7 6 5 9 9 O 1.21584 * 119.99551 * 4.95912 * 8 7 6 10 10 N 1.34767 * 119.99980 * 184.95685 * 8 7 6 11 11 C 1.46928 * 120.63644 * 354.36043 * 10 8 7 12 12 C 1.52756 * 109.00916 * 233.58583 * 11 10 8 13 13 C 1.53040 * 109.38556 * 305.58257 * 12 11 10 14 14 C 1.50694 * 109.45490 * 181.25624 * 13 12 11 15 15 H 1.08004 * 120.00185 * 239.94192 * 14 13 12 16 16 C 1.37872 * 119.99923 * 59.93626 * 14 13 12 17 17 N 1.31517 * 120.00063 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47038 * 60.00144 * 18 16 14 20 20 H 1.48500 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47065 * 300.00104 * 18 16 14 22 22 C 1.53041 * 109.53490 * 61.24154 * 13 12 11 23 23 C 1.46928 * 120.62869 * 174.63924 * 10 8 7 24 24 C 1.53005 * 117.52163 * 89.41312 * 5 2 1 25 25 C 1.53000 * 60.00018 * 107.47965 * 24 5 2 26 26 H 1.09006 * 109.46837 * 311.11894 * 1 2 3 27 27 H 1.08995 * 109.47556 * 71.11607 * 1 2 3 28 28 H 1.08996 * 109.47022 * 191.12185 * 1 2 3 29 29 H 1.08999 * 109.47427 * 152.95842 * 6 5 2 30 30 H 1.08998 * 109.46752 * 32.95079 * 6 5 2 31 31 H 0.97003 * 119.99788 * 355.08086 * 7 6 5 32 32 H 1.08999 * 109.58015 * 353.41798 * 11 10 8 33 33 H 1.09000 * 109.58465 * 113.83888 * 11 10 8 34 34 H 1.09004 * 109.56339 * 185.54872 * 12 11 10 35 35 H 1.09001 * 109.39079 * 65.51030 * 12 11 10 36 36 H 1.09007 * 109.45950 * 301.22536 * 13 12 11 37 37 H 0.97009 * 120.00266 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.49983 * 178.68892 * 22 13 12 39 39 H 1.08999 * 109.52463 * 58.60524 * 22 13 12 40 40 H 1.09005 * 109.58501 * 246.15824 * 23 10 8 41 41 H 1.08995 * 109.58806 * 6.43703 * 23 10 8 42 42 H 1.09003 * 117.49927 * 214.97294 * 24 5 2 43 43 H 1.08994 * 117.49450 * 359.97438 * 24 5 2 44 44 H 1.08995 * 117.49632 * 252.51109 * 25 24 5 45 45 H 1.09001 * 117.49573 * 107.49507 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 1.5755 -0.0242 2.8228 7 7 2.4725 1.0458 3.2664 8 6 2.0929 1.8756 4.2583 9 8 1.0462 1.6817 4.8459 10 7 2.8734 2.9202 4.5988 11 6 4.1963 3.0978 3.9849 12 6 5.2430 3.2346 5.0891 13 6 4.8343 4.3625 6.0394 14 6 5.8813 4.5193 7.1118 15 1 5.6141 4.3909 8.1503 16 6 7.1804 4.8266 6.7672 17 7 7.5057 4.9834 5.5026 18 14 8.4785 5.0204 8.0964 19 1 8.6001 3.7515 8.8582 20 1 9.7839 5.3489 7.4694 21 1 8.0833 6.1154 9.0184 22 6 3.4889 4.0246 6.6859 23 6 2.4200 3.8998 5.5956 24 6 2.3212 -2.2585 1.6847 25 6 3.5663 -1.3764 1.7971 26 1 -0.3633 0.6759 0.7742 27 1 -0.3634 0.3326 -0.9723 28 1 -0.3633 -1.0083 0.1982 29 1 1.4346 -0.7394 3.6331 30 1 0.6123 0.4021 2.5427 31 1 3.3397 1.1571 2.8463 32 1 4.4311 2.2317 3.3661 33 1 4.1965 3.9987 3.3713 34 1 6.2122 3.4649 4.6468 35 1 5.3091 2.2982 5.6431 36 1 4.7448 5.2939 5.4803 37 1 8.4199 5.1993 5.2600 38 1 3.2096 4.8172 7.3801 39 1 3.5706 3.0808 7.2251 40 1 2.2723 4.8675 5.1161 41 1 1.4818 3.5641 6.0374 42 1 1.9714 -2.7533 2.5908 43 1 2.1828 -2.8184 0.7599 44 1 4.2471 -1.3561 0.9462 45 1 4.0356 -1.2909 2.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525991351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:45 Heat of formation + Delta-G solvation = -66.538632 kcal Electronic energy + Delta-G solvation = -27242.525625 eV Core-core repulsion = 23388.679379 eV Total energy + Delta-G solvation = -3853.846246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.08820 -38.37214 -37.34664 -36.77549 -36.32433 -34.06859 -33.41444 -31.16181 -30.11493 -29.96410 -27.51659 -25.84918 -23.24250 -22.97774 -22.47745 -22.01390 -20.17987 -19.17230 -18.75098 -17.90229 -17.21079 -16.52579 -16.28994 -16.13077 -15.98758 -15.30645 -15.03098 -14.59002 -14.27906 -13.99923 -13.68364 -13.54968 -13.46714 -13.23422 -13.02676 -12.67011 -12.56508 -12.41523 -12.32544 -12.21509 -12.07641 -11.70448 -11.56065 -11.43810 -11.30550 -11.16241 -10.92586 -10.66984 -10.61421 -10.36756 -10.15259 -9.78382 -9.54615 -9.14997 -9.04561 -8.92072 -8.36782 -7.89538 -6.02369 -4.08598 -0.34487 2.26171 2.60430 3.10003 3.29847 3.31356 3.34751 3.37631 3.50817 3.67147 3.98490 4.12178 4.16636 4.35097 4.41206 4.45671 4.67875 4.97541 5.07002 5.13024 5.26677 5.32354 5.35128 5.45400 5.53500 5.58486 5.79878 5.96410 6.11994 6.18365 6.31601 6.48298 6.53758 6.69338 6.85500 7.00024 7.14889 7.22870 7.44069 7.67585 7.93310 8.04125 8.27845 8.41155 8.89560 8.94662 9.56369 11.02978 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002940 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.469667 B = 9522.306951 C =10052.693397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.451 3.549 3 O -0.923 6.923 4 O -0.938 6.938 5 C -0.659 4.659 6 C 0.198 3.802 7 N -0.751 5.751 8 C 0.708 3.292 9 O -0.607 6.607 10 N -0.616 5.616 11 C 0.110 3.890 12 C -0.124 4.124 13 C 0.050 3.950 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.124 4.124 23 C 0.129 3.871 24 C -0.111 4.111 25 C -0.114 4.114 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.401 0.599 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -13.762 -11.486 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.631 3.369 3 O -0.920 6.920 4 O -0.936 6.936 5 C -0.747 4.747 6 C 0.072 3.928 7 N -0.411 5.411 8 C 0.410 3.590 9 O -0.487 6.487 10 N -0.351 5.351 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.162 4.162 23 C 0.006 3.994 24 C -0.149 4.149 25 C -0.153 4.153 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.098 -13.520 -11.823 21.655 hybrid contribution 0.662 -0.028 1.100 1.284 sum -11.436 -13.548 -10.723 20.720 Atomic orbital electron populations 1.30224 1.26295 1.11879 1.11905 1.07014 0.78605 0.75533 0.75715 1.93637 1.78982 1.33594 1.85775 1.93588 1.79641 1.67640 1.52683 1.32194 1.13679 1.08062 1.20815 1.20201 0.91686 0.88768 0.92115 1.45265 1.21799 1.33917 1.40072 1.15769 0.83503 0.79681 0.80065 1.90847 1.25640 1.75493 1.56750 1.47401 1.18114 1.25703 1.43906 1.21835 0.82507 1.00116 0.96820 1.21949 0.98970 0.99375 0.95961 1.18613 0.90222 0.93977 0.94074 1.21173 0.93583 1.47312 0.92976 0.92783 1.24958 0.98492 0.95193 0.95314 1.69828 1.18991 1.48572 1.15656 0.86679 0.80827 0.78566 0.82028 1.20396 1.21326 1.20324 1.22019 0.96744 1.00812 0.96620 1.21593 0.98357 0.90142 0.89288 1.22998 1.00329 0.85918 1.05661 1.22941 0.87826 0.98655 1.05829 0.84916 0.85152 0.85074 0.90251 0.90876 0.76092 0.92534 0.91742 0.87746 0.94389 0.95395 0.92924 0.92153 0.93010 0.92350 0.90269 0.86553 0.86273 0.86755 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.58 10.14 101.05 1.02 -2.55 16 2 S 2.45 21.43 5.42 -107.50 -0.58 20.85 16 3 O -0.92 -12.03 18.10 -57.83 -1.05 -13.07 16 4 O -0.94 -10.26 17.56 -57.83 -1.02 -11.28 16 5 C -0.66 -5.07 2.05 -90.61 -0.19 -5.25 16 6 C 0.20 2.02 5.64 -4.04 -0.02 2.00 16 7 N -0.75 -10.35 5.38 -65.23 -0.35 -10.70 16 8 C 0.71 12.62 8.29 -86.92 -0.72 11.90 16 9 O -0.61 -12.29 15.77 5.29 0.08 -12.20 16 10 N -0.62 -11.35 2.98 -178.76 -0.53 -11.88 16 11 C 0.11 2.00 6.36 -3.93 -0.03 1.98 16 12 C -0.12 -2.73 5.14 -26.84 -0.14 -2.87 16 13 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 14 C -0.51 -13.64 8.56 -34.44 -0.29 -13.93 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -24.40 11.31 55.43 0.63 -23.77 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 23 C 0.13 2.40 6.44 -3.71 -0.02 2.38 16 24 C -0.11 -0.59 9.76 -26.73 -0.26 -0.85 16 25 C -0.11 -0.81 9.55 -26.73 -0.26 -1.07 16 26 H 0.13 0.70 7.05 -51.92 -0.37 0.33 16 27 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 30 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 31 H 0.40 5.18 5.67 -40.82 -0.23 4.95 16 32 H 0.06 0.88 5.66 -51.93 -0.29 0.59 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 2.55 6.03 -51.93 -0.31 2.24 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 42 H 0.12 0.49 8.04 -51.93 -0.42 0.07 16 43 H 0.12 0.51 7.87 -51.93 -0.41 0.10 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -34.86 371.14 -10.48 -45.34 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.91 Total: 3.72 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.33 Total: -8.42 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.26 Total: -46.35 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.98 Total: -36.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -0.58 Total: 20.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.86 -10.48 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525991351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.194 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds