Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57822 * 2 1 4 4 O 1.42101 * 108.57738 * 228.97985 * 2 1 3 5 5 C 1.81393 * 101.92316 * 114.49287 * 2 1 3 6 6 C 1.53002 * 115.55191 * 303.70994 * 5 2 1 7 7 N 1.46501 * 109.47136 * 272.96050 * 6 5 2 8 8 C 1.34780 * 120.00336 * 175.08496 * 7 6 5 9 9 O 1.21584 * 119.99551 * 4.95912 * 8 7 6 10 10 N 1.34767 * 119.99980 * 184.95685 * 8 7 6 11 11 C 1.46928 * 120.63644 * 354.36043 * 10 8 7 12 12 C 1.52756 * 109.00916 * 233.58583 * 11 10 8 13 13 C 1.53040 * 109.38556 * 305.58257 * 12 11 10 14 14 C 1.50694 * 109.45490 * 181.25624 * 13 12 11 15 15 H 1.08004 * 120.00185 * 239.94192 * 14 13 12 16 16 C 1.37872 * 119.99923 * 59.93626 * 14 13 12 17 17 N 1.31517 * 120.00063 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47038 * 60.00144 * 18 16 14 20 20 H 1.48500 * 109.47219 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47065 * 300.00104 * 18 16 14 22 22 C 1.53041 * 109.53490 * 61.24154 * 13 12 11 23 23 C 1.46928 * 120.62869 * 174.63924 * 10 8 7 24 24 C 1.53005 * 117.52163 * 89.41312 * 5 2 1 25 25 C 1.53000 * 60.00018 * 107.47965 * 24 5 2 26 26 H 1.09006 * 109.46837 * 311.11894 * 1 2 3 27 27 H 1.08995 * 109.47556 * 71.11607 * 1 2 3 28 28 H 1.08996 * 109.47022 * 191.12185 * 1 2 3 29 29 H 1.08999 * 109.47427 * 152.95842 * 6 5 2 30 30 H 1.08998 * 109.46752 * 32.95079 * 6 5 2 31 31 H 0.97003 * 119.99788 * 355.08086 * 7 6 5 32 32 H 1.08999 * 109.58015 * 353.41798 * 11 10 8 33 33 H 1.09000 * 109.58465 * 113.83888 * 11 10 8 34 34 H 1.09004 * 109.56339 * 185.54872 * 12 11 10 35 35 H 1.09001 * 109.39079 * 65.51030 * 12 11 10 36 36 H 1.09007 * 109.45950 * 301.22536 * 13 12 11 37 37 H 0.97009 * 120.00266 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.49983 * 178.68892 * 22 13 12 39 39 H 1.08999 * 109.52463 * 58.60524 * 22 13 12 40 40 H 1.09005 * 109.58501 * 246.15824 * 23 10 8 41 41 H 1.08995 * 109.58806 * 6.43703 * 23 10 8 42 42 H 1.09003 * 117.49927 * 214.97294 * 24 5 2 43 43 H 1.08994 * 117.49450 * 359.97438 * 24 5 2 44 44 H 1.08995 * 117.49632 * 252.51109 * 25 24 5 45 45 H 1.09001 * 117.49573 * 107.49507 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 1.5755 -0.0242 2.8228 7 7 2.4725 1.0458 3.2664 8 6 2.0929 1.8756 4.2583 9 8 1.0462 1.6817 4.8459 10 7 2.8734 2.9202 4.5988 11 6 4.1963 3.0978 3.9849 12 6 5.2430 3.2346 5.0891 13 6 4.8343 4.3625 6.0394 14 6 5.8813 4.5193 7.1118 15 1 5.6141 4.3909 8.1503 16 6 7.1804 4.8266 6.7672 17 7 7.5057 4.9834 5.5026 18 14 8.4785 5.0204 8.0964 19 1 8.6001 3.7515 8.8582 20 1 9.7839 5.3489 7.4694 21 1 8.0833 6.1154 9.0184 22 6 3.4889 4.0246 6.6859 23 6 2.4200 3.8998 5.5956 24 6 2.3212 -2.2585 1.6847 25 6 3.5663 -1.3764 1.7971 26 1 -0.3633 0.6759 0.7742 27 1 -0.3634 0.3326 -0.9723 28 1 -0.3633 -1.0083 0.1982 29 1 1.4346 -0.7394 3.6331 30 1 0.6123 0.4021 2.5427 31 1 3.3397 1.1571 2.8463 32 1 4.4311 2.2317 3.3661 33 1 4.1965 3.9987 3.3713 34 1 6.2122 3.4649 4.6468 35 1 5.3091 2.2982 5.6431 36 1 4.7448 5.2939 5.4803 37 1 8.4199 5.1993 5.2600 38 1 3.2096 4.8172 7.3801 39 1 3.5706 3.0808 7.2251 40 1 2.2723 4.8675 5.1161 41 1 1.4818 3.5641 6.0374 42 1 1.9714 -2.7533 2.5908 43 1 2.1828 -2.8184 0.7599 44 1 4.2471 -1.3561 0.9462 45 1 4.0356 -1.2909 2.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525991351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -91.511834 kcal Electronic energy + Delta-G solvation = -27243.608544 eV Core-core repulsion = 23388.679379 eV Total energy + Delta-G solvation = -3854.929166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43427 -39.20928 -38.36637 -38.01460 -37.10178 -35.40744 -35.05146 -32.89414 -31.69328 -30.54129 -28.66544 -27.45158 -24.71764 -23.93989 -23.62256 -22.99910 -21.68552 -20.49382 -19.65811 -19.17530 -18.34140 -17.92398 -17.38393 -17.09614 -16.88947 -16.53198 -16.52265 -15.85769 -15.38651 -15.19250 -14.89226 -14.69870 -14.51002 -14.34229 -14.16467 -13.95758 -13.93509 -13.49364 -13.21635 -13.19441 -13.12652 -13.10136 -12.78955 -12.53685 -12.48417 -12.33603 -12.13912 -12.05853 -11.98822 -11.78822 -11.47120 -11.25099 -11.20399 -10.98576 -10.78185 -10.39076 -10.21239 -9.39285 -8.06591 -6.20099 -0.97429 1.43303 1.43747 1.51207 1.55746 1.78928 2.11264 2.22053 2.44904 2.69151 2.95064 3.04828 3.19705 3.36605 3.51231 3.78514 4.07237 4.09458 4.18333 4.23501 4.35757 4.42740 4.45968 4.47951 4.59527 4.61736 4.66634 4.70509 4.88874 4.89454 4.96342 4.99913 5.08627 5.22124 5.22705 5.42906 5.44166 5.49688 5.65843 5.98776 6.03416 6.13947 6.40204 6.89272 6.92657 7.47548 7.52311 8.96493 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.002940 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.469667 B = 9522.306951 C =10052.693397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.448 3.552 3 O -0.976 6.976 4 O -0.967 6.967 5 C -0.656 4.656 6 C 0.189 3.811 7 N -0.742 5.742 8 C 0.705 3.295 9 O -0.631 6.631 10 N -0.622 5.622 11 C 0.120 3.880 12 C -0.113 4.113 13 C 0.046 3.954 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.113 4.113 23 C 0.134 3.866 24 C -0.085 4.085 25 C -0.131 4.131 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.405 0.595 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 -15.482 -11.697 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.634 3.366 3 O -0.973 6.973 4 O -0.964 6.964 5 C -0.746 4.746 6 C 0.065 3.935 7 N -0.401 5.401 8 C 0.407 3.593 9 O -0.513 6.513 10 N -0.358 5.358 11 C -0.002 4.002 12 C -0.152 4.152 13 C 0.028 3.972 14 C -0.573 4.573 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.200 1.200 22 C -0.151 4.151 23 C 0.011 3.989 24 C -0.124 4.124 25 C -0.169 4.169 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.181 0.819 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.243 0.757 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.306 -15.258 -12.072 23.571 hybrid contribution 0.995 0.458 1.174 1.606 sum -12.310 -14.799 -10.898 22.121 Atomic orbital electron populations 1.30098 1.21791 1.14275 1.13048 1.06752 0.80212 0.74085 0.75597 1.93574 1.81045 1.36126 1.86604 1.93549 1.81212 1.67707 1.53931 1.31909 1.14444 1.09555 1.18698 1.20480 0.91703 0.88100 0.93203 1.45324 1.22347 1.33733 1.38666 1.15906 0.83099 0.79732 0.80597 1.90824 1.26602 1.76088 1.57829 1.47395 1.18153 1.26159 1.44082 1.21653 0.81556 1.01445 0.95581 1.21703 0.99006 0.98004 0.96477 1.18588 0.91385 0.93486 0.93777 1.21520 0.94749 1.47638 0.93403 0.93399 1.25643 1.00295 0.94998 0.97219 1.69949 1.19290 1.48887 1.17000 0.85754 0.78510 0.78529 0.79665 1.20009 1.20897 1.19985 1.21859 0.95805 1.00306 0.97145 1.21490 0.97564 0.90901 0.88903 1.23231 0.97723 0.84152 1.07246 1.23069 0.88173 0.99774 1.05866 0.84286 0.83901 0.81882 0.89513 0.89772 0.75726 0.89747 0.91893 0.90233 0.95354 0.97886 0.92948 0.91646 0.94008 0.91405 0.89772 0.84756 0.84710 0.86616 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.08 10.14 113.37 1.15 -3.93 16 2 S 2.45 39.72 5.42 -56.49 -0.31 39.42 16 3 O -0.98 -25.45 18.10 -127.37 -2.30 -27.76 16 4 O -0.97 -20.18 17.56 -127.37 -2.24 -22.42 16 5 C -0.66 -8.72 2.05 -10.79 -0.02 -8.74 16 6 C 0.19 3.45 5.64 86.38 0.49 3.94 16 7 N -0.74 -19.39 5.38 -478.54 -2.57 -21.97 16 8 C 0.71 24.28 8.29 179.06 1.48 25.76 16 9 O -0.63 -24.68 15.77 -3.98 -0.06 -24.75 16 10 N -0.62 -22.52 2.98 -837.75 -2.49 -25.02 16 11 C 0.12 4.37 6.36 86.22 0.55 4.92 16 12 C -0.11 -5.07 5.14 30.53 0.16 -4.91 16 13 C 0.05 2.24 2.07 -11.51 -0.02 2.22 16 14 C -0.54 -28.96 8.56 25.60 0.22 -28.74 16 15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.91 -50.68 11.31 21.45 0.24 -50.43 16 18 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.11 -4.68 5.30 30.67 0.16 -4.51 16 23 C 0.13 4.94 6.44 86.36 0.56 5.49 16 24 C -0.09 -0.65 9.76 30.60 0.30 -0.35 16 25 C -0.13 -1.64 9.55 30.60 0.29 -1.35 16 26 H 0.14 1.04 7.05 -2.39 -0.02 1.03 16 27 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 1.50 7.89 -2.39 -0.02 1.48 16 30 H 0.08 1.36 6.49 -2.39 -0.02 1.35 16 31 H 0.40 9.99 5.67 -92.71 -0.53 9.47 16 32 H 0.08 2.57 5.66 -2.39 -0.01 2.55 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 38 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 42 H 0.13 0.60 8.04 -2.39 -0.02 0.58 16 43 H 0.13 0.67 7.87 -2.39 -0.02 0.65 16 44 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.91 371.14 -1.48 -77.39 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.47 Total: 19.39 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.76 Total: -8.82 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.83 Total: -97.42 kcal Atomic # 8 Polarization: -70.31 SS G_CDS: -4.60 Total: -74.92 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.31 Total: 39.42 kcal Total: -75.91 -1.48 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525991351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.120 kcal (2) G-P(sol) polarization free energy of solvation -75.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds