Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00094 * 2 1 4 4 O 1.21587 * 120.00012 * 172.40182 * 3 2 1 5 5 N 1.34773 * 119.99998 * 352.39688 * 3 2 1 6 6 C 1.46923 * 120.63012 * 155.60088 * 5 3 2 7 7 C 1.53198 * 108.77224 * 233.62762 * 6 5 3 8 8 C 1.53040 * 109.31392 * 305.36247 * 7 6 5 9 9 C 1.50695 * 109.45774 * 181.38454 * 8 7 6 10 10 H 1.08003 * 120.00186 * 334.43440 * 9 8 7 11 11 C 1.37884 * 119.99807 * 154.43332 * 9 8 7 12 12 N 1.31508 * 119.99867 * 184.63762 * 11 9 8 13 13 Si 1.86803 * 119.99879 * 4.63868 * 11 9 8 14 14 H 1.48494 * 109.46871 * 264.96563 * 13 11 9 15 15 H 1.48498 * 109.46778 * 24.96551 * 13 11 9 16 16 H 1.48503 * 109.46975 * 144.96449 * 13 11 9 17 17 C 1.53040 * 109.53514 * 61.36762 * 8 7 6 18 18 C 1.46929 * 120.63171 * 335.61842 * 5 3 2 19 19 C 1.46497 * 119.99824 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.64139 * 180.43468 * 19 2 1 21 21 C 1.53873 * 109.64731 * 59.99949 * 19 2 1 22 22 C 1.55047 * 106.62424 * 192.96732 * 21 19 2 23 23 S 1.83284 * 102.56642 * 42.43475 * 22 21 19 24 24 O 1.42101 * 109.35330 * 90.19053 * 23 22 21 25 25 O 1.42104 * 109.35330 * 223.25199 * 23 22 21 26 26 C 1.54168 * 109.64850 * 300.72576 * 19 2 1 27 27 H 1.08998 * 109.47041 * 93.03862 * 1 2 3 28 28 H 1.09000 * 109.47316 * 213.04650 * 1 2 3 29 29 H 1.09000 * 109.46685 * 333.04580 * 1 2 3 30 30 H 1.08996 * 109.58682 * 113.84372 * 6 5 3 31 31 H 1.08992 * 109.58798 * 353.41450 * 6 5 3 32 32 H 1.08997 * 109.49353 * 185.40896 * 7 6 5 33 33 H 1.09003 * 109.52151 * 65.33211 * 7 6 5 34 34 H 1.08994 * 109.46004 * 301.36008 * 8 7 6 35 35 H 0.97007 * 120.00002 * 179.97438 * 12 11 9 36 36 H 1.08993 * 109.50240 * 58.58458 * 17 8 7 37 37 H 1.09000 * 109.49414 * 178.68421 * 17 8 7 38 38 H 1.08995 * 109.58605 * 246.16057 * 18 5 3 39 39 H 1.08999 * 109.58555 * 6.58491 * 18 5 3 40 40 H 1.09004 * 110.02819 * 312.26103 * 21 19 2 41 41 H 1.09005 * 110.02561 * 73.62778 * 21 19 2 42 42 H 1.08999 * 110.79013 * 160.70396 * 22 21 19 43 43 H 1.09003 * 110.79044 * 283.97472 * 22 21 19 44 44 H 1.09003 * 110.31830 * 266.66589 * 26 19 2 45 45 H 1.09003 * 110.31771 * 28.85619 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3468 1.1718 0.1392 5 7 1.4740 2.3293 -0.1544 6 6 2.0375 3.5874 0.3536 7 6 1.0002 4.2635 1.2558 8 6 -0.3110 4.4285 0.4840 9 6 -1.3234 5.1239 1.3571 10 1 -1.2461 5.0567 2.4323 11 6 -2.3483 5.8461 0.7834 12 7 -3.1778 6.5276 1.5429 13 14 -2.5586 5.8562 -1.0727 14 1 -1.8774 7.0468 -1.6415 15 1 -1.9609 4.6233 -1.6453 16 1 -4.0047 5.9066 -1.4067 17 6 -0.8448 3.0517 0.0818 18 6 0.1716 2.3620 -0.8337 19 6 2.1975 -1.2687 0.0006 20 1 3.2697 -1.0728 0.0083 21 6 1.8286 -2.0796 -1.2541 22 6 2.3648 -3.5166 -1.0269 23 16 1.9200 -3.8364 0.7221 24 8 0.6278 -4.4247 0.7795 25 8 3.0130 -4.4637 1.3788 26 6 1.8142 -2.0880 1.2490 27 1 -0.3633 -0.0545 -1.0262 28 1 -0.3634 -0.8614 0.5604 29 1 -0.3633 0.9161 0.4658 30 1 2.2779 4.2441 -0.4825 31 1 2.9400 3.3781 0.9277 32 1 1.3677 5.2428 1.5622 33 1 0.8279 3.6471 2.1381 34 1 -0.1330 5.0244 -0.4111 35 1 -3.8987 7.0360 1.1393 36 1 -0.9996 2.4463 0.9748 37 1 -1.7905 3.1686 -0.4475 38 1 0.2599 2.9186 -1.7666 39 1 -0.1571 1.3440 -1.0429 40 1 0.7461 -2.1006 -1.3801 41 1 2.2982 -1.6399 -2.1341 42 1 1.8659 -4.2247 -1.6886 43 1 3.4451 -3.5532 -1.1674 44 1 2.5166 -1.8937 2.0596 45 1 0.7981 -1.8479 1.5621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551564688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = -51.571632 kcal Electronic energy + Delta-G solvation = -27719.753220 eV Core-core repulsion = 23866.555992 eV Total energy + Delta-G solvation = -3853.197229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85948 -38.00920 -37.39367 -36.88315 -36.36198 -34.49343 -33.24176 -31.48787 -30.89807 -29.78375 -27.69213 -26.38517 -25.13307 -23.05651 -22.64909 -21.41528 -20.25579 -19.22994 -18.76571 -17.66581 -17.29671 -16.93891 -16.84223 -16.27093 -15.96530 -15.61585 -14.86456 -14.66178 -14.56674 -14.38764 -14.21164 -13.88297 -13.27081 -13.23978 -13.07377 -12.87429 -12.79904 -12.52463 -12.49662 -12.44193 -12.35576 -12.15404 -11.86651 -11.60609 -11.16817 -11.11932 -11.08774 -10.77653 -10.70208 -10.39697 -10.17654 -9.89229 -9.76260 -9.42168 -9.18954 -8.94531 -8.61129 -8.12843 -6.16276 -4.15841 -0.37713 2.05971 2.54503 3.03063 3.19211 3.21649 3.27852 3.30104 3.60992 3.72493 3.95653 4.09598 4.21920 4.32793 4.38309 4.53445 4.79560 4.97838 5.07917 5.10869 5.15922 5.22788 5.25840 5.44810 5.49317 5.56310 5.61330 5.64441 5.74767 5.85937 5.94699 6.13677 6.22491 6.27314 6.60198 6.62646 6.64701 6.79014 7.03249 7.19385 7.36048 7.66676 7.92557 8.43486 8.54647 8.89260 9.46567 10.97090 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022800 B = 0.003024 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.801985 B = 9256.053696 C = 9610.845605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.622 5.622 3 C 0.714 3.286 4 O -0.592 6.592 5 N -0.621 5.621 6 C 0.131 3.869 7 C -0.117 4.117 8 C 0.020 3.980 9 C -0.514 4.514 10 H 0.071 0.929 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.872 3.128 14 H -0.280 1.280 15 H -0.256 1.256 16 H -0.289 1.289 17 C -0.134 4.134 18 C 0.063 3.937 19 C 0.167 3.833 20 H 0.123 0.877 21 C -0.134 4.134 22 C -0.584 4.584 23 S 2.393 3.607 24 O -0.934 6.934 25 O -0.936 6.936 26 C -0.612 4.612 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -18.243 -7.328 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.359 5.359 3 C 0.418 3.582 4 O -0.470 6.470 5 N -0.358 5.358 6 C 0.008 3.992 7 C -0.155 4.155 8 C 0.000 4.000 9 C -0.552 4.552 10 H 0.089 0.911 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.700 3.300 14 H -0.206 1.206 15 H -0.180 1.180 16 H -0.215 1.215 17 C -0.172 4.172 18 C -0.058 4.058 19 C 0.060 3.940 20 H 0.141 0.859 21 C -0.174 4.174 22 C -0.715 4.715 23 S 2.575 3.425 24 O -0.931 6.931 25 O -0.933 6.933 26 C -0.742 4.742 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.077 -18.915 -6.734 22.034 hybrid contribution -0.438 0.976 -1.399 1.761 sum 8.639 -17.939 -8.133 21.508 Atomic orbital electron populations 1.22625 0.79807 1.05248 1.01553 1.46954 1.06366 1.03980 1.78626 1.15869 0.84807 0.80196 0.77367 1.90861 1.12254 1.85930 1.57942 1.47191 1.21997 1.05716 1.60882 1.21657 0.96834 0.83095 0.97579 1.21940 0.95931 0.99717 0.97959 1.19033 0.93016 0.92047 0.95854 1.20997 1.09352 1.30287 0.94526 0.91057 1.25064 0.95662 0.94594 0.97829 1.69916 1.17536 1.30810 1.35471 0.86985 0.77320 0.79128 0.86577 1.20637 1.18015 1.21547 1.22449 0.97432 0.99339 0.97997 1.22957 0.83409 1.03536 0.95930 1.21195 0.99889 0.83271 0.89608 0.85864 1.22621 1.03292 0.91262 1.00218 1.30585 1.11813 1.05123 1.23940 1.08958 0.75663 0.78338 0.79508 1.93637 1.39288 1.74325 1.85821 1.93627 1.54303 1.72881 1.72513 1.31025 1.12674 1.22453 1.08009 0.91602 0.91322 0.87613 0.92221 0.90462 0.91169 0.92616 0.95293 0.92661 0.92149 0.91376 0.92385 0.87898 0.88978 0.87869 0.84125 0.84074 0.83585 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 7.41 59.85 0.44 0.91 16 2 N -0.62 -7.00 2.78 -194.47 -0.54 -7.54 16 3 C 0.71 10.84 7.87 -86.92 -0.68 10.15 16 4 O -0.59 -10.62 15.46 5.29 0.08 -10.53 16 5 N -0.62 -9.61 2.84 -178.50 -0.51 -10.12 16 6 C 0.13 2.12 6.34 -3.71 -0.02 2.10 16 7 C -0.12 -2.15 5.34 -26.61 -0.14 -2.29 16 8 C 0.02 0.41 1.61 -91.73 -0.15 0.26 16 9 C -0.51 -13.30 8.88 -34.44 -0.31 -13.61 16 10 H 0.07 2.05 8.05 -52.48 -0.42 1.63 16 11 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 13 Si 0.87 19.80 26.18 -169.99 -4.45 15.35 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.26 -5.23 5.45 56.52 0.31 -4.92 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 C -0.13 -2.35 4.45 -26.61 -0.12 -2.47 16 18 C 0.06 0.91 5.39 -3.71 -0.02 0.89 16 19 C 0.17 1.44 2.94 -66.87 -0.20 1.25 16 20 H 0.12 1.18 6.94 -51.93 -0.36 0.82 16 21 C -0.13 -0.79 5.93 -25.19 -0.15 -0.94 16 22 C -0.58 -2.69 7.31 38.24 0.28 -2.41 16 23 S 2.39 17.64 6.10 -107.50 -0.66 16.98 16 24 O -0.93 -9.96 18.15 -57.73 -1.05 -11.01 16 25 O -0.94 -10.31 18.15 -57.73 -1.05 -11.36 16 26 C -0.61 -4.46 6.81 37.77 0.26 -4.20 16 27 H 0.07 0.50 6.71 -51.93 -0.35 0.15 16 28 H 0.07 0.50 6.27 -51.93 -0.33 0.18 16 29 H 0.11 1.21 3.70 -51.93 -0.19 1.02 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.25 7.33 -51.93 -0.38 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.62 6.21 -51.93 -0.32 0.30 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 37 H 0.07 1.25 5.85 -51.93 -0.30 0.95 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.18 3.06 -71.27 -0.22 0.96 16 40 H 0.09 0.45 7.33 -51.93 -0.38 0.07 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.14 0.98 6.12 -51.93 -0.32 0.66 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -36.23 346.76 -9.61 -45.84 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.53 Total: 1.28 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.91 Total: -8.56 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.27 Total: -43.21 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -2.01 Total: -32.90 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.45 Total: 15.35 kcal Atomic # 16 Polarization: 17.64 SS G_CDS: -0.66 Total: 16.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.23 -9.61 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551564688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.736 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds