Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50707 * 119.99896 * 2 1 4 4 N 1.46495 * 109.47186 * 125.00337 * 3 2 1 5 5 C 1.46501 * 120.00642 * 86.12541 * 4 3 2 6 6 C 1.50698 * 109.46959 * 89.99641 * 5 4 3 7 7 H 1.08004 * 119.99832 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00204 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99927 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00272 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47088 * 180.02562 * 10 8 6 12 12 H 1.48497 * 109.47404 * 300.00169 * 10 8 6 13 13 H 1.48494 * 109.47142 * 60.00556 * 10 8 6 14 14 C 1.34784 * 119.99584 * 266.12780 * 4 3 2 15 15 O 1.21280 * 119.99713 * 184.82416 * 14 4 3 16 16 C 1.50691 * 120.00100 * 4.82098 * 14 4 3 17 17 H 1.08999 * 109.58659 * 6.70561 * 16 14 4 18 18 C 1.53187 * 109.59081 * 246.42067 * 16 14 4 19 19 C 1.53035 * 109.31794 * 185.57880 * 18 16 14 20 20 C 1.53045 * 109.53677 * 61.36310 * 19 18 16 21 21 C 1.53189 * 109.31112 * 298.63321 * 20 19 18 22 22 N 1.46925 * 108.77510 * 54.63826 * 21 20 19 23 23 S 1.65601 * 120.63315 * 126.38563 * 22 21 20 24 24 C 1.81395 * 104.45314 * 267.32205 * 23 22 21 25 25 O 1.42104 * 104.27494 * 23.39312 * 23 22 21 26 26 O 1.42097 * 104.27921 * 151.24846 * 23 22 21 27 27 H 1.08001 * 119.99927 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00297 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47168 * 4.99709 * 3 2 1 31 31 H 1.09002 * 109.46777 * 245.00143 * 3 2 1 32 32 H 1.09001 * 109.46664 * 330.00704 * 5 4 3 33 33 H 1.08991 * 109.47200 * 210.00262 * 5 4 3 34 34 H 0.97002 * 119.99971 * 359.97438 * 9 8 6 35 35 H 1.09005 * 109.49803 * 305.53088 * 18 16 14 36 36 H 1.09002 * 109.50152 * 65.59176 * 18 16 14 37 37 H 1.09002 * 109.46650 * 181.38366 * 19 18 16 38 38 H 1.08995 * 109.46204 * 301.34253 * 19 18 16 39 39 H 1.08993 * 109.49588 * 58.59273 * 20 19 18 40 40 H 1.09005 * 109.49771 * 178.65425 * 20 19 18 41 41 H 1.08996 * 109.58559 * 174.42188 * 21 20 19 42 42 H 1.08997 * 109.59201 * 294.84884 * 21 20 19 43 43 H 1.09006 * 109.46864 * 59.99773 * 24 23 22 44 44 H 1.08998 * 109.47675 * 179.97438 * 24 23 22 45 45 H 1.09000 * 109.47400 * 300.00261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 4.3306 0.7488 0.9945 6 6 5.2906 1.8025 0.5053 7 1 4.9399 2.8063 0.3158 8 6 6.6167 1.4854 0.3008 9 7 7.0438 0.2632 0.5320 10 14 7.8067 2.7916 -0.3049 11 1 9.1619 2.2005 -0.4437 12 1 7.3525 3.3022 -1.6233 13 1 7.8519 3.9105 0.6704 14 6 2.6195 1.8932 2.2983 15 8 3.4175 1.9941 3.2059 16 6 1.2097 2.3952 2.4751 17 1 0.6108 2.1151 1.6086 18 6 1.2219 3.9202 2.6197 19 6 -0.1927 4.4099 2.9374 20 6 -0.6589 3.8027 4.2626 21 6 -0.6926 2.2764 4.1365 22 7 0.6270 1.8096 3.6901 23 16 1.4423 0.6456 4.5403 24 6 2.4951 1.5765 5.6871 25 8 0.4246 -0.0482 5.2490 26 8 2.2331 -0.0142 3.5612 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 4.2972 -0.0725 0.2786 33 1 4.6644 0.3741 1.9620 34 1 6.4259 -0.4150 0.8469 35 1 1.8952 4.2036 3.4287 36 1 1.5629 4.3714 1.6878 37 1 -0.1916 5.4970 3.0165 38 1 -0.8702 4.1049 2.1399 39 1 0.0320 4.0872 5.0561 40 1 -1.6571 4.1707 4.5002 41 1 -0.9280 1.8349 5.1049 42 1 -1.4488 1.9865 3.4070 43 1 1.8710 2.1918 6.3353 44 1 3.0745 0.8812 6.2946 45 1 3.1722 2.2163 5.1211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590408950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = -69.539012 kcal Electronic energy + Delta-G solvation = -29198.339618 eV Core-core repulsion = 25344.363265 eV Total energy + Delta-G solvation = -3853.976353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09583 -37.85111 -36.77647 -35.77429 -35.60782 -33.49060 -32.53956 -32.12423 -31.36220 -29.10636 -27.27057 -25.80961 -24.70649 -23.81964 -22.56100 -20.62349 -20.01811 -19.47519 -18.26910 -17.53842 -16.88491 -16.67331 -16.05956 -15.94304 -15.37073 -14.69696 -14.62898 -14.40747 -14.29617 -14.12825 -13.73633 -13.65847 -13.38292 -13.13630 -13.01617 -12.68130 -12.40870 -12.19513 -11.90603 -11.89602 -11.75559 -11.59185 -11.47323 -11.19352 -11.12639 -11.01923 -10.98377 -10.80512 -10.72045 -10.51662 -10.51373 -10.09223 -9.34801 -9.10499 -9.02984 -8.90851 -8.33609 -7.61248 -6.33309 -4.04933 0.52235 2.40588 2.63201 3.24332 3.43758 3.47548 3.65026 3.75447 4.10010 4.37223 4.52357 4.56385 4.70103 4.76227 4.93199 4.97831 5.06018 5.07407 5.18796 5.21153 5.29982 5.33644 5.41730 5.45134 5.55885 5.60306 5.62749 5.77935 5.86756 5.91679 5.97917 6.03981 6.12844 6.17112 6.24024 6.50442 6.77664 6.82201 6.95226 7.30584 7.45459 8.10220 8.26944 8.47652 8.80686 8.94267 9.64692 11.04052 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.004841 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.525394 B = 5782.280641 C = 5885.010034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.129 3.871 4 N -0.563 5.563 5 C 0.242 3.758 6 C -0.606 4.606 7 H 0.050 0.950 8 C 0.019 3.981 9 N -0.910 5.910 10 Si 1.071 2.929 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.521 3.479 15 O -0.550 6.550 16 C 0.132 3.868 17 H 0.095 0.905 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.137 4.137 21 C 0.123 3.877 22 N -0.986 5.986 23 S 2.606 3.394 24 C -0.666 4.666 25 O -0.974 6.974 26 O -0.929 6.929 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.020 0.980 33 H 0.042 0.958 34 H 0.269 0.731 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.113 6.841 4.925 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.168 4.168 3 C 0.006 3.994 4 N -0.291 5.291 5 C 0.123 3.877 6 C -0.645 4.645 7 H 0.069 0.931 8 C -0.185 4.185 9 N -0.546 5.546 10 Si 0.899 3.101 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.215 1.215 14 C 0.307 3.693 15 O -0.431 6.431 16 C 0.023 3.977 17 H 0.113 0.887 18 C -0.164 4.164 19 C -0.151 4.151 20 C -0.176 4.176 21 C -0.002 4.002 22 N -0.824 5.824 23 S 2.701 3.299 24 C -0.817 4.817 25 O -0.965 6.965 26 O -0.919 6.919 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.159 6.179 4.844 17.966 hybrid contribution -1.437 0.298 0.647 1.604 sum -17.596 6.477 5.491 19.538 Atomic orbital electron populations 1.23699 0.95649 1.01441 1.03146 1.23477 0.96061 0.99844 0.97455 1.20724 0.92374 0.94414 0.91920 1.47695 1.15967 1.55379 1.10042 1.19343 0.77039 0.93547 0.97792 1.22259 0.95818 0.97511 1.48871 0.93138 1.25758 0.97207 1.00250 0.95280 1.70778 1.38836 1.02625 1.42382 0.83523 0.76008 0.74523 0.76056 1.20751 1.21533 1.21530 1.19836 0.88016 0.77793 0.83658 1.90499 1.54198 1.58017 1.40423 1.21142 0.93649 0.94579 0.88378 0.88738 1.21854 0.98024 0.92997 1.03556 1.21455 0.96079 1.00218 0.97365 1.21963 1.01883 0.95382 0.98405 1.21415 0.83500 0.94434 1.00883 1.57688 1.28606 1.59431 1.36660 1.05000 0.74679 0.74510 0.75730 1.30721 1.17215 1.16479 1.17295 1.93544 1.56740 1.70528 1.75692 1.93665 1.70805 1.71537 1.55883 0.88615 0.88906 0.86954 0.90874 0.88809 0.96171 0.94038 0.92078 0.90273 0.90369 0.91387 0.91659 0.91383 0.90695 0.89016 0.90938 0.87001 0.86408 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 13.78 29.02 0.40 -2.14 16 2 C -0.15 -2.31 9.76 -36.02 -0.35 -2.66 16 3 C 0.13 2.16 5.47 -5.19 -0.03 2.13 16 4 N -0.56 -12.05 2.43 -176.44 -0.43 -12.48 16 5 C 0.24 6.39 4.45 -5.19 -0.02 6.37 16 6 C -0.61 -17.18 9.39 -34.44 -0.32 -17.50 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 9 N -0.91 -27.96 13.65 55.43 0.76 -27.20 16 10 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.52 10.49 3.89 -10.99 -0.04 10.44 16 15 O -0.55 -12.55 11.31 -18.04 -0.20 -12.76 16 16 C 0.13 1.93 2.77 -68.76 -0.19 1.74 16 17 H 0.09 1.25 4.78 -51.93 -0.25 1.00 16 18 C -0.12 -1.51 5.34 -26.62 -0.14 -1.65 16 19 C -0.11 -0.98 5.88 -26.69 -0.16 -1.14 16 20 C -0.14 -1.11 6.08 -26.61 -0.16 -1.28 16 21 C 0.12 1.24 6.33 -3.71 -0.02 1.21 16 22 N -0.99 -13.49 3.22 -107.71 -0.35 -13.84 16 23 S 2.61 42.66 5.37 -107.50 -0.58 42.08 16 24 C -0.67 -9.48 10.54 101.05 1.06 -8.41 16 25 O -0.97 -16.81 16.63 -57.54 -0.96 -17.77 16 26 O -0.93 -19.43 13.96 -66.93 -0.93 -20.36 16 27 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.09 0.98 7.59 -52.49 -0.40 0.59 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.07 0.98 5.73 -51.93 -0.30 0.69 16 31 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 32 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 33 H 0.04 1.24 7.36 -51.93 -0.38 0.86 16 34 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 35 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.88 7.02 -51.93 -0.36 0.52 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.16 2.68 5.47 -51.92 -0.28 2.40 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -36.09 365.32 -9.30 -45.39 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.96 Total: 3.45 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.08 Total: -12.42 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.02 Total: -53.52 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.09 Total: -50.89 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: 42.66 SS G_CDS: -0.58 Total: 42.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.09 -9.30 -45.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590408950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.150 kcal (2) G-P(sol) polarization free energy of solvation -36.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds