Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00099 * 2 1 4 4 C 1.52999 * 109.47316 * 180.02562 * 3 2 1 5 5 O 1.42896 * 113.40974 * 313.19675 * 4 3 2 6 6 C 1.53496 * 114.20673 * 179.97438 * 4 3 2 7 7 N 1.47063 * 87.98472 * 220.34479 * 6 4 3 8 8 C 1.34779 * 136.05550 * 207.08564 * 7 6 4 9 9 O 1.21669 * 120.00135 * 5.99837 * 8 7 6 10 10 C 1.46892 * 120.00011 * 185.99316 * 8 7 6 11 11 C 1.36121 * 125.43325 * 5.68596 * 10 8 7 12 12 C 1.41704 * 107.74989 * 180.02562 * 11 10 8 13 13 C 1.40016 * 133.35774 * 180.02562 * 12 11 10 14 14 C 1.36578 * 119.83159 * 180.02562 * 13 12 11 15 15 C 1.38854 * 120.60447 * 359.97438 * 14 13 12 16 16 C 1.37846 * 120.62981 * 0.02683 * 15 14 13 17 17 C 1.39091 * 119.81159 * 359.69269 * 16 15 14 18 18 N 1.37837 * 133.15581 * 179.61852 * 17 16 15 19 19 C 1.36894 * 125.61828 * 0.73913 * 18 17 16 20 20 H 1.08001 * 119.99885 * 137.96716 * 19 18 17 21 21 C 1.39011 * 120.00021 * 317.68533 * 19 18 17 22 22 N 1.31346 * 119.99711 * 146.23743 * 21 19 18 23 23 Si 1.86801 * 119.99990 * 326.24110 * 21 19 18 24 24 H 1.48501 * 109.47212 * 65.20523 * 23 21 19 25 25 H 1.48507 * 109.46931 * 185.20487 * 23 21 19 26 26 H 1.48500 * 109.47145 * 305.19987 * 23 21 19 27 27 C 1.47060 * 87.88517 * 27.34084 * 7 6 4 28 28 H 1.08993 * 109.46916 * 60.00022 * 1 2 3 29 29 H 1.09004 * 109.46709 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47186 * 299.99847 * 1 2 3 31 31 H 1.09004 * 109.47112 * 59.99881 * 3 2 1 32 32 H 1.09001 * 109.46937 * 300.00201 * 3 2 1 33 33 H 0.96700 * 114.00340 * 46.80681 * 5 4 3 34 34 H 1.09004 * 113.46758 * 105.56225 * 6 4 3 35 35 H 1.09004 * 113.52178 * 335.13085 * 6 4 3 36 36 H 1.07998 * 126.12817 * 0.04069 * 11 10 8 37 37 H 1.07998 * 120.08212 * 0.02562 * 13 12 11 38 38 H 1.08003 * 119.69754 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.68787 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.09325 * 179.97438 * 16 15 14 41 41 H 0.96997 * 119.99987 * 180.02562 * 22 21 19 42 42 H 1.09001 * 113.46803 * 87.44166 * 27 7 6 43 43 H 1.09001 * 113.46866 * 217.87608 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 4.0310 0.2448 0.9550 6 6 4.2734 2.5306 -0.0013 7 7 5.2304 1.9464 -0.9531 8 6 6.5234 2.1475 -1.2759 9 8 7.1979 2.9265 -0.6290 10 6 7.1183 1.4261 -2.4088 11 6 6.4439 0.6171 -3.2710 12 6 7.3765 0.1171 -4.2135 13 6 7.2651 -0.7420 -5.3134 14 6 8.3727 -1.0477 -6.0517 15 6 9.6113 -0.5136 -5.7224 16 6 9.7462 0.3345 -4.6441 17 6 8.6315 0.6651 -3.8807 18 7 8.4522 1.4600 -2.7690 19 6 9.4328 2.1701 -2.1301 20 1 9.2369 3.1768 -1.7913 21 6 10.6788 1.5935 -1.9123 22 7 11.7608 2.3375 -1.9416 23 14 10.8141 -0.2393 -1.5779 24 1 10.3836 -0.9952 -2.7814 25 1 12.2231 -0.5811 -1.2564 26 1 9.9434 -0.5987 -0.4298 27 6 4.1538 1.0508 -1.4020 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5641 -0.6020 0.9524 34 1 4.7178 2.7825 0.9616 35 1 3.6873 3.3478 -0.4216 36 1 5.3871 0.3959 -3.2422 37 1 6.3057 -1.1619 -5.5773 38 1 8.2843 -1.7110 -6.8995 39 1 10.4774 -0.7650 -6.3167 40 1 10.7138 0.7446 -4.3954 41 1 12.6303 1.9351 -1.7900 42 1 3.5354 1.4772 -2.1918 43 1 4.4962 0.0419 -1.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590772263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -7.081657 kcal Electronic energy + Delta-G solvation = -28464.922778 eV Core-core repulsion = 24478.210828 eV Total energy + Delta-G solvation = -3986.711950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.89553 -40.24897 -38.17572 -37.24897 -35.93730 -35.09441 -33.59353 -31.42249 -30.40747 -29.15750 -28.57201 -27.14161 -26.17600 -25.51925 -24.70158 -22.73425 -21.08756 -20.68102 -19.87648 -18.92465 -18.04069 -17.28905 -16.87837 -16.40592 -16.23216 -15.82563 -15.61543 -15.27626 -14.91368 -14.58270 -14.34111 -14.04833 -13.82364 -13.70499 -13.37349 -13.06473 -12.84164 -12.77420 -12.60935 -12.50133 -12.22384 -12.09010 -11.83494 -11.69526 -11.36359 -10.98275 -10.96964 -10.83778 -10.55364 -10.24591 -10.17883 -9.96458 -9.88230 -9.27258 -9.18434 -8.56530 -8.42810 -7.28003 -6.95055 -6.90626 -4.37074 1.66348 2.56194 2.90624 2.92193 3.12463 3.15483 3.25692 3.30232 3.73222 3.96199 4.06410 4.18010 4.33131 4.62397 4.63647 4.81831 4.88065 4.96946 5.00947 5.08644 5.18118 5.26936 5.30479 5.39492 5.54582 5.61962 5.71292 5.78307 5.79351 5.90909 6.09733 6.19589 6.31624 6.53134 6.65834 6.70789 6.76803 6.90887 7.23457 7.31593 7.41472 7.56658 7.65513 7.73860 7.96551 8.05181 8.31081 8.73962 8.87958 9.13983 10.10436 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003954 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.314552 B = 7079.901530 C = 8215.491520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.097 3.903 5 O -0.523 6.523 6 C 0.124 3.876 7 N -0.637 5.637 8 C 0.619 3.381 9 O -0.521 6.521 10 C -0.020 4.020 11 C -0.203 4.203 12 C -0.121 4.121 13 C -0.086 4.086 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.078 4.078 17 C 0.051 3.949 18 N -0.242 5.242 19 C -0.344 4.344 20 H 0.130 0.870 21 C 0.093 3.907 22 N -0.801 5.801 23 Si 0.850 3.150 24 H -0.234 1.234 25 H -0.275 1.275 26 H -0.262 1.262 27 C 0.078 3.922 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.387 0.613 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.287 0.713 42 H 0.090 0.910 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 -5.125 0.204 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.030 4.030 4 C 0.055 3.945 5 O -0.329 6.329 6 C 0.000 4.000 7 N -0.375 5.375 8 C 0.412 3.588 9 O -0.396 6.396 10 C -0.136 4.136 11 C -0.229 4.229 12 C -0.126 4.126 13 C -0.105 4.105 14 C -0.173 4.173 15 C -0.166 4.166 16 C -0.098 4.098 17 C -0.063 4.063 18 N 0.097 4.903 19 C -0.471 4.471 20 H 0.148 0.852 21 C -0.124 4.124 22 N -0.428 5.428 23 Si 0.671 3.329 24 H -0.158 1.158 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.046 4.046 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.583 -4.037 0.875 18.062 hybrid contribution -0.362 -0.954 0.166 1.033 sum -17.945 -4.991 1.041 18.655 Atomic orbital electron populations 1.22763 0.80310 1.03033 1.00161 1.87781 1.20327 1.27407 1.95502 1.23015 0.92604 0.85598 1.01733 1.22490 0.89404 0.92435 0.90217 1.86525 1.61385 1.27720 1.57262 1.22855 0.88303 0.93552 0.95268 1.48827 1.07948 1.40001 1.40695 1.16626 0.78556 0.81133 0.82509 1.90822 1.58988 1.37176 1.52601 1.19538 0.87137 1.06912 1.00014 1.20529 0.98084 1.04624 0.99710 1.17925 0.92919 1.02848 0.98880 1.20081 0.97628 0.98190 0.94589 1.20321 0.93050 1.03072 1.00871 1.20528 0.97199 1.00587 0.98272 1.20135 0.96564 0.98321 0.94742 1.18369 0.95561 1.01239 0.91087 1.40173 1.04972 1.29011 1.16162 1.19498 0.89100 0.99656 1.38874 0.85241 1.25433 0.94126 0.99817 0.93019 1.69875 0.98797 1.38856 1.35257 0.87220 0.78450 0.84969 0.82234 1.15756 1.19994 1.18691 1.23841 0.87462 0.96906 0.96392 0.93796 0.89389 0.93937 0.91844 0.91453 0.76385 0.89306 0.88609 0.85101 0.87493 0.87537 0.87147 0.86741 0.90236 0.89175 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.26 9.85 -48.05 -0.47 -3.74 16 3 C 0.05 0.38 5.69 37.16 0.21 0.59 16 4 C 0.10 1.09 1.84 -89.97 -0.17 0.93 16 5 O -0.52 -6.88 13.56 -48.05 -0.65 -7.53 16 6 C 0.12 1.62 8.04 -8.52 -0.07 1.55 16 7 N -0.64 -11.18 3.68 -186.55 -0.69 -11.86 16 8 C 0.62 14.39 8.02 -12.76 -0.10 14.29 16 9 O -0.52 -14.01 15.80 5.22 0.08 -13.93 16 10 C -0.02 -0.48 6.76 -82.25 -0.56 -1.03 16 11 C -0.20 -4.28 9.89 -39.02 -0.39 -4.67 16 12 C -0.12 -2.69 6.16 -106.89 -0.66 -3.35 16 13 C -0.09 -1.63 10.06 -39.52 -0.40 -2.03 16 14 C -0.15 -2.79 9.97 -39.95 -0.40 -3.19 16 15 C -0.15 -2.85 10.02 -39.50 -0.40 -3.25 16 16 C -0.08 -1.81 7.21 -39.41 -0.28 -2.09 16 17 C 0.05 1.26 5.35 -83.83 -0.45 0.82 16 18 N -0.24 -6.46 2.37 -56.08 -0.13 -6.59 16 19 C -0.34 -9.90 9.03 -15.00 -0.14 -10.04 16 20 H 0.13 4.07 7.13 -52.49 -0.37 3.70 16 21 C 0.09 2.55 4.38 -17.47 -0.08 2.47 16 22 N -0.80 -22.08 13.95 55.50 0.77 -21.31 16 23 Si 0.85 20.96 26.36 -169.99 -4.48 16.48 16 24 H -0.23 -5.68 5.42 56.52 0.31 -5.37 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.26 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.08 1.00 6.02 -8.39 -0.05 0.95 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 33 H 0.39 3.82 8.23 45.56 0.38 4.20 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.13 2.25 5.44 -52.49 -0.29 1.96 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.11 2.72 6.65 -52.49 -0.35 2.37 16 41 H 0.29 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 43 H 0.09 1.24 6.90 -51.93 -0.36 0.88 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -34.59 356.12 -7.85 -42.44 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.85 Total: 7.44 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.80 Total: -6.76 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.04 Total: -39.77 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.04 Total: -25.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.48 Total: 16.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.59 -7.85 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590772263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.357 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds