Wall clock time and date at job start Tue Mar 31 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42104 * 109.46891 * 2 1 4 4 C 1.81396 * 103.00235 * 116.38835 * 2 1 3 5 5 C 1.52999 * 112.85069 * 297.54809 * 4 2 1 6 6 N 1.46497 * 109.46857 * 291.46593 * 5 4 2 7 7 C 1.34785 * 119.99908 * 174.87035 * 6 5 4 8 8 O 1.21581 * 119.99919 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99907 * 179.97438 * 7 6 5 10 10 C 1.47019 * 125.64901 * 0.02562 * 9 7 6 11 11 C 1.54323 * 107.27191 * 181.04001 * 10 9 7 12 12 C 1.55437 * 102.96773 * 22.19179 * 11 10 9 13 13 O 1.42911 * 111.01499 * 82.52643 * 12 11 10 14 14 C 1.50702 * 111.11989 * 206.46291 * 12 11 10 15 15 H 1.08000 * 119.99696 * 353.55904 * 14 12 11 16 16 C 1.37877 * 120.00334 * 173.55671 * 14 12 11 17 17 N 1.31518 * 119.99693 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00294 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47020 * 60.00123 * 18 16 14 20 20 H 1.48499 * 109.47480 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47368 * 300.00441 * 18 16 14 22 22 C 1.47427 * 125.64688 * 179.97438 * 9 7 6 23 23 C 1.53781 * 113.61144 * 68.74080 * 4 2 1 24 24 C 1.53948 * 87.02022 * 89.23349 * 23 4 2 25 25 C 1.53776 * 113.61599 * 166.34701 * 4 2 1 26 26 H 1.08997 * 109.47010 * 303.82608 * 1 2 3 27 27 H 1.09006 * 109.46868 * 63.81861 * 1 2 3 28 28 H 1.08997 * 109.47180 * 183.82111 * 1 2 3 29 29 H 1.08999 * 109.47083 * 171.46483 * 5 4 2 30 30 H 1.09007 * 109.47408 * 51.46141 * 5 4 2 31 31 H 0.96998 * 120.00519 * 354.86149 * 6 5 4 32 32 H 1.08999 * 109.88352 * 300.45725 * 10 9 7 33 33 H 1.09005 * 109.88220 * 61.46991 * 10 9 7 34 34 H 1.09000 * 110.71805 * 140.56032 * 11 10 9 35 35 H 1.08999 * 110.71954 * 263.82997 * 11 10 9 36 36 H 0.96690 * 113.99766 * 186.50108 * 13 12 11 37 37 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 38 38 H 1.09001 * 110.36167 * 274.72676 * 22 9 7 39 39 H 1.09000 * 110.36516 * 36.94009 * 22 9 7 40 40 H 1.09005 * 113.61271 * 203.75178 * 23 4 2 41 41 H 1.08998 * 113.61788 * 334.65071 * 23 4 2 42 42 H 1.09003 * 113.53667 * 270.80640 * 24 23 4 43 43 H 1.08997 * 113.67214 * 139.93376 * 24 23 4 44 44 H 1.08995 * 113.61781 * 25.35068 * 25 4 2 45 45 H 1.09008 * 113.61336 * 156.25478 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7855 1.5833 5 6 1.7205 0.0118 2.7889 6 7 2.4776 1.2612 2.8973 7 6 2.1390 2.1758 3.8276 8 8 1.2049 1.9641 4.5766 9 7 2.8358 3.3251 3.9276 10 6 3.9817 3.7081 3.0899 11 6 4.4693 5.0867 3.5830 12 6 3.9274 5.1482 5.0385 13 8 4.7969 4.4582 5.9387 14 6 3.7175 6.5738 5.4801 15 1 4.0380 7.3879 4.8469 16 6 3.1164 6.8387 6.6923 17 7 2.7266 5.8473 7.4635 18 14 2.8556 8.6056 7.2392 19 1 1.9968 9.3078 6.2518 20 1 2.1950 8.6199 8.5691 21 1 4.1682 9.2941 7.3316 22 6 2.5746 4.4069 4.8946 23 6 1.8629 -2.2797 1.6402 24 6 3.2704 -2.5570 1.0815 25 6 3.6948 -1.2133 1.6972 26 1 -0.3633 0.5721 0.8537 27 1 -0.3633 0.4534 -0.9223 28 1 -0.3633 -1.0253 0.0685 29 1 1.8581 -0.5764 3.6962 30 1 0.6620 0.2383 2.6598 31 1 3.2226 1.4303 2.2996 32 1 4.7798 2.9733 3.1950 33 1 3.6728 3.7730 2.0465 34 1 5.5581 5.1363 3.5745 35 1 4.0411 5.8862 2.9782 36 1 4.4522 4.3838 6.8389 37 1 2.3033 6.0337 8.3161 38 1 1.8104 5.0827 4.5104 39 1 2.2655 3.9918 5.8538 40 1 1.7134 -2.6546 2.6528 41 1 1.0589 -2.5618 0.9605 42 1 3.3114 -2.5707 -0.0076 43 1 3.7593 -3.4191 1.5352 44 1 4.3676 -0.6357 1.0634 45 1 4.0472 -1.2961 2.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:34 Heat of formation + Delta-G solvation = -86.282009 kcal Electronic energy + Delta-G solvation = -27523.854610 eV Core-core repulsion = 23669.152227 eV Total energy + Delta-G solvation = -3854.702383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.85668 -38.94749 -37.21661 -35.87414 -34.14501 -33.92848 -32.17525 -30.21278 -29.37656 -28.20994 -27.46046 -25.97495 -24.92304 -23.16240 -22.20542 -20.41390 -19.58973 -19.34594 -17.65750 -17.27282 -16.97182 -16.41959 -15.92255 -15.35067 -15.07853 -14.95358 -14.81444 -14.49005 -14.19181 -13.94558 -13.71126 -13.56386 -12.96746 -12.85267 -12.75419 -12.71772 -12.65514 -12.25296 -12.08736 -11.93876 -11.59304 -11.44995 -11.33816 -10.97550 -10.79270 -10.74506 -10.70996 -10.52169 -10.44395 -10.14692 -10.11222 -9.54624 -9.28904 -8.78155 -8.63959 -8.46041 -8.29019 -7.58112 -6.21922 -4.31656 1.32118 2.31646 3.14622 3.26313 3.31086 3.33356 3.53656 3.83775 4.11950 4.20985 4.31119 4.43143 4.49128 4.67944 4.92407 4.95047 5.04997 5.07868 5.30559 5.39630 5.42528 5.53185 5.56155 5.60975 5.63946 5.78062 5.79977 5.83894 5.88366 5.96885 6.12564 6.21983 6.60160 6.79120 6.83514 6.97104 7.06554 7.30723 7.39882 7.74900 7.79957 8.10207 8.62943 8.73066 9.22547 9.35824 9.43946 10.85120 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024040 B = 0.002977 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.431608 B = 9403.753841 C = 9475.610531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.266 4.734 3 O -0.833 6.833 4 C -0.432 4.432 5 C 0.164 3.836 6 N -0.749 5.749 7 C 0.717 3.283 8 O -0.603 6.603 9 N -0.626 5.626 10 C 0.106 3.894 11 C -0.115 4.115 12 C 0.249 3.751 13 O -0.582 6.582 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.892 5.892 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.115 3.885 23 C -0.089 4.089 24 C -0.142 4.142 25 C -0.098 4.098 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.380 0.620 37 H 0.270 0.730 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 -19.540 -17.402 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.462 4.538 3 O -0.829 6.829 4 C -0.529 4.529 5 C 0.038 3.962 6 N -0.406 5.406 7 C 0.419 3.581 8 O -0.483 6.483 9 N -0.362 5.362 10 C -0.018 4.018 11 C -0.153 4.153 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.531 5.531 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.007 4.007 23 C -0.127 4.127 24 C -0.179 4.179 25 C -0.136 4.136 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.342 -19.459 -17.879 26.428 hybrid contribution -1.238 2.248 2.389 3.506 sum -1.580 -17.211 -15.491 23.209 Atomic orbital electron populations 1.27639 1.21564 1.08051 1.07583 1.70355 0.86958 0.99121 0.97337 1.93165 1.73231 1.36298 1.80176 1.29538 1.04735 1.04219 1.14398 1.20887 0.95006 0.84077 0.96184 1.45077 1.37709 1.18951 1.38908 1.15488 0.82183 0.79434 0.80976 1.90860 1.31863 1.78935 1.46656 1.47880 1.32584 1.17721 1.38058 1.21920 0.88269 0.97862 0.93712 1.22630 1.00827 0.94218 0.97640 1.19686 0.84324 0.89827 0.85334 1.86099 1.48800 1.79637 1.24532 1.21420 1.40359 0.91563 1.04248 0.91585 1.25086 0.93935 0.98023 0.96210 1.69724 1.40155 1.31277 1.11926 0.86455 0.78493 0.84072 0.77819 1.20046 1.21107 1.20004 1.23109 1.00379 0.85852 0.91400 1.22548 0.97725 0.89742 1.02735 1.22957 0.96310 0.97653 1.01024 1.22535 0.91737 0.96599 1.02739 0.89482 0.87659 0.86951 0.91673 0.92240 0.76641 0.92975 0.92770 0.90836 0.90456 0.77010 0.92004 0.92673 0.89747 0.89218 0.90315 0.89044 0.90576 0.90984 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.74 10.44 101.05 1.06 -2.69 16 2 S 1.27 10.14 12.91 -107.50 -1.39 8.75 16 3 O -0.83 -12.41 16.80 -35.23 -0.59 -13.01 16 4 C -0.43 -3.71 0.72 -89.81 -0.06 -3.78 16 5 C 0.16 2.30 4.98 -4.04 -0.02 2.28 16 6 N -0.75 -13.37 4.90 -65.22 -0.32 -13.69 16 7 C 0.72 16.56 8.49 -86.91 -0.74 15.83 16 8 O -0.60 -15.99 16.59 5.29 0.09 -15.90 16 9 N -0.63 -14.69 3.33 -176.22 -0.59 -15.27 16 10 C 0.11 2.16 6.15 -3.07 -0.02 2.14 16 11 C -0.12 -2.50 6.15 -24.74 -0.15 -2.66 16 12 C 0.25 6.41 0.88 -89.46 -0.08 6.33 16 13 O -0.58 -15.57 13.17 -35.23 -0.46 -16.03 16 14 C -0.54 -14.65 8.28 -34.44 -0.29 -14.94 16 15 H 0.07 1.76 7.79 -52.49 -0.41 1.35 16 16 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 17 N -0.89 -24.82 10.69 55.43 0.59 -24.23 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.11 3.01 5.38 -2.52 -0.01 2.99 16 23 C -0.09 -0.46 7.25 -25.83 -0.19 -0.64 16 24 C -0.14 -0.60 7.82 -25.83 -0.20 -0.80 16 25 C -0.10 -0.74 6.81 -25.92 -0.18 -0.92 16 26 H 0.09 0.95 7.15 -51.93 -0.37 0.57 16 27 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.11 0.49 7.67 -51.93 -0.40 0.09 16 29 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 30 H 0.06 0.89 6.87 -51.93 -0.36 0.54 16 31 H 0.40 6.71 6.34 -40.82 -0.26 6.45 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 36 H 0.38 10.40 7.57 45.56 0.34 10.74 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.05 1.50 8.03 -51.93 -0.42 1.09 16 39 H 0.08 2.46 7.32 -51.93 -0.38 2.08 16 40 H 0.09 0.53 8.00 -51.93 -0.42 0.11 16 41 H 0.08 0.21 7.63 -51.93 -0.40 -0.19 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 45 H 0.09 0.82 8.10 -51.92 -0.42 0.40 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -37.29 371.66 -9.47 -46.76 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -6.40 Total: 15.97 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.98 Total: 4.97 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.31 Total: -53.19 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.97 Total: -44.94 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 10.14 SS G_CDS: -1.39 Total: 8.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.29 -9.47 -46.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.521 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds