Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42094 * 109.47098 * 2 1 4 4 C 1.81402 * 103.00046 * 116.38696 * 2 1 3 5 5 C 1.53003 * 112.84704 * 297.55058 * 4 2 1 6 6 N 1.46491 * 109.46990 * 291.47514 * 5 4 2 7 7 C 1.34778 * 120.00089 * 174.86989 * 6 5 4 8 8 O 1.21592 * 120.00003 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00027 * 180.02562 * 7 6 5 10 10 C 1.47424 * 125.65035 * 359.95763 * 9 7 6 11 11 C 1.55122 * 104.94156 * 204.04192 * 10 9 7 12 12 C 1.55158 * 101.48427 * 323.21750 * 11 10 9 13 13 O 1.42895 * 110.72198 * 276.83257 * 12 11 10 14 14 C 1.50704 * 110.71915 * 153.73562 * 12 11 10 15 15 H 1.08003 * 119.99896 * 2.44409 * 14 12 11 16 16 C 1.37875 * 120.00018 * 182.16645 * 14 12 11 17 17 N 1.31514 * 120.00044 * 0.27755 * 16 14 12 18 18 Si 1.86797 * 120.00041 * 180.27521 * 16 14 12 19 19 H 1.48503 * 109.47320 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47207 * 119.99762 * 18 16 14 21 21 H 1.48493 * 109.47568 * 239.99853 * 18 16 14 22 22 C 1.47030 * 125.64757 * 179.97438 * 9 7 6 23 23 C 1.53783 * 113.61685 * 68.74321 * 4 2 1 24 24 C 1.53953 * 87.01704 * 89.22906 * 23 4 2 25 25 C 1.53776 * 87.11279 * 25.36447 * 24 23 4 26 26 H 1.08994 * 109.47455 * 303.81891 * 1 2 3 27 27 H 1.09000 * 109.46862 * 63.81876 * 1 2 3 28 28 H 1.09003 * 109.47199 * 183.82236 * 1 2 3 29 29 H 1.09005 * 109.46511 * 171.47981 * 5 4 2 30 30 H 1.08995 * 109.47319 * 51.48033 * 5 4 2 31 31 H 0.97006 * 120.00521 * 354.86780 * 6 5 4 32 32 H 1.09007 * 110.36373 * 322.99892 * 10 9 7 33 33 H 1.08996 * 110.36769 * 85.32657 * 10 9 7 34 34 H 1.09001 * 111.16203 * 205.13314 * 11 10 9 35 35 H 1.09002 * 110.93971 * 81.21145 * 11 10 9 36 36 H 0.96708 * 114.00385 * 177.56175 * 13 12 11 37 37 H 0.97001 * 120.00099 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.87893 * 59.48574 * 22 9 7 39 39 H 1.09003 * 109.88072 * 298.32052 * 22 9 7 40 40 H 1.08992 * 113.61958 * 203.75372 * 23 4 2 41 41 H 1.09009 * 113.61310 * 334.65736 * 23 4 2 42 42 H 1.09004 * 113.54382 * 270.81321 * 24 23 4 43 43 H 1.09001 * 113.73923 * 139.94640 * 24 23 4 44 44 H 1.08995 * 113.61734 * 220.08456 * 25 24 23 45 45 H 1.09003 * 113.61202 * 89.18512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7855 1.5834 5 6 1.7202 0.0119 2.7889 6 7 2.4771 1.2614 2.8971 7 6 2.1384 2.1761 3.8273 8 8 1.2043 1.9642 4.5764 9 7 2.8345 3.3259 3.9265 10 6 3.9835 3.7100 3.0866 11 6 4.7796 4.7313 3.9407 12 6 3.6339 5.5002 4.6502 13 8 3.1152 6.5283 3.8041 14 6 4.1097 6.0783 5.9581 15 1 5.1405 5.9593 6.2579 16 6 3.2306 6.7639 6.7693 17 7 1.9754 6.9087 6.4043 18 14 3.8222 7.4870 8.3868 19 1 5.2660 7.1882 8.5640 20 1 3.6196 8.9581 8.3749 21 1 3.0516 6.8903 9.5072 22 6 2.5737 4.4049 4.8907 23 6 1.8629 -2.2798 1.6405 24 6 3.2704 -2.5570 1.0817 25 6 3.6948 -1.2133 1.6974 26 1 -0.3634 0.5719 0.8537 27 1 -0.3633 0.4534 -0.9222 28 1 -0.3634 -1.0254 0.0685 29 1 1.8581 -0.5762 3.6963 30 1 0.6619 0.2381 2.6599 31 1 3.2221 1.4306 2.2994 32 1 4.5992 2.8383 2.8645 33 1 3.6396 4.1776 2.1641 34 1 5.3662 5.3992 3.3099 35 1 5.4153 4.2218 4.6649 36 1 2.3717 7.0145 4.1863 37 1 1.3570 7.3914 6.9748 38 1 2.6602 4.0223 5.9076 39 1 1.5758 4.8129 4.7295 40 1 1.7134 -2.6546 2.6529 41 1 1.0589 -2.5619 0.9605 42 1 3.3116 -2.5706 -0.0075 43 1 3.7604 -3.4189 1.5345 44 1 4.3675 -0.6356 1.0636 45 1 4.0471 -1.2960 2.7256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = -85.949900 kcal Electronic energy + Delta-G solvation = -27491.703808 eV Core-core repulsion = 23637.015826 eV Total energy + Delta-G solvation = -3854.687982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.88348 -38.96732 -37.25992 -35.86827 -34.19282 -33.96924 -32.14335 -30.17018 -29.36811 -28.24462 -27.47509 -25.99178 -24.92454 -23.16889 -22.28145 -20.42771 -19.60574 -19.34205 -17.67460 -17.26915 -17.01794 -16.45329 -15.90623 -15.48937 -15.14136 -14.91756 -14.80026 -14.34604 -14.27103 -13.93517 -13.67315 -13.51938 -12.91342 -12.84407 -12.83319 -12.73225 -12.66942 -12.24549 -12.09239 -12.03671 -11.59442 -11.46262 -11.35274 -11.03269 -10.80496 -10.76775 -10.70109 -10.57333 -10.43502 -10.13981 -10.10162 -9.56521 -9.27138 -8.81077 -8.63456 -8.45732 -8.25031 -7.66790 -6.24049 -4.32584 1.32644 2.32107 3.11797 3.23454 3.31392 3.35171 3.53828 3.80581 4.10450 4.19857 4.30493 4.41561 4.47375 4.63794 4.93349 4.95701 5.03704 5.06884 5.29168 5.38134 5.40790 5.48175 5.54689 5.58642 5.62603 5.77758 5.80518 5.82722 5.89089 5.94756 6.16269 6.17414 6.59257 6.79185 6.80865 6.95507 7.06811 7.31783 7.38631 7.71666 7.78169 8.08337 8.60205 8.71721 9.19523 9.35802 9.46407 10.83857 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.002989 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.665386 B = 9366.805127 C = 9512.013641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.266 4.734 3 O -0.832 6.832 4 C -0.433 4.433 5 C 0.164 3.836 6 N -0.749 5.749 7 C 0.716 3.284 8 O -0.603 6.603 9 N -0.628 5.628 10 C 0.106 3.894 11 C -0.115 4.115 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.069 3.931 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.123 3.877 23 C -0.089 4.089 24 C -0.142 4.142 25 C -0.098 4.098 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.269 0.731 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -21.557 -15.447 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.462 4.538 3 O -0.827 6.827 4 C -0.529 4.529 5 C 0.038 3.962 6 N -0.407 5.407 7 C 0.418 3.582 8 O -0.483 6.483 9 N -0.364 5.364 10 C -0.018 4.018 11 C -0.153 4.153 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.574 4.574 15 H 0.085 0.915 16 C -0.134 4.134 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.127 4.127 24 C -0.179 4.179 25 C -0.136 4.136 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.375 -21.520 -15.896 26.790 hybrid contribution -0.952 1.871 2.850 3.540 sum 0.423 -19.649 -13.046 23.589 Atomic orbital electron populations 1.27639 1.21538 1.08030 1.07638 1.70362 0.87008 0.99186 0.97244 1.93179 1.73204 1.36254 1.80072 1.29553 1.04680 1.04219 1.14485 1.20889 0.95081 0.84012 0.96171 1.45088 1.37737 1.18972 1.38900 1.15488 0.82130 0.79482 0.81074 1.90864 1.31669 1.78974 1.46802 1.47901 1.32970 1.17596 1.37976 1.22245 0.87399 0.97411 0.94700 1.22763 0.97694 0.96467 0.98418 1.19503 0.87503 0.83993 0.88286 1.86096 1.54542 1.51281 1.47497 1.21558 0.96948 1.35553 1.03365 0.91471 1.25090 0.94675 0.95106 0.98503 1.69664 1.03467 1.41626 1.38610 0.86335 0.79000 0.78751 0.82723 1.19593 1.20749 1.20795 1.22861 1.00876 0.85801 0.90382 1.22545 0.97732 0.89748 1.02713 1.22955 0.96312 0.97610 1.01058 1.22532 0.91779 0.96643 1.02666 0.89464 0.87626 0.86964 0.91695 0.92199 0.76594 0.92885 0.91864 0.90539 0.90628 0.76546 0.92053 0.91890 0.92110 0.89245 0.90298 0.89030 0.90596 0.90980 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.83 10.44 101.05 1.06 -2.77 16 2 S 1.27 10.24 12.91 -107.50 -1.39 8.85 16 3 O -0.83 -12.61 16.80 -35.23 -0.59 -13.20 16 4 C -0.43 -3.65 0.72 -89.81 -0.06 -3.71 16 5 C 0.16 2.26 4.98 -4.04 -0.02 2.24 16 6 N -0.75 -13.18 4.90 -65.23 -0.32 -13.50 16 7 C 0.72 16.38 8.49 -86.92 -0.74 15.64 16 8 O -0.60 -15.86 16.67 5.29 0.09 -15.77 16 9 N -0.63 -14.66 3.33 -176.10 -0.59 -15.25 16 10 C 0.11 2.15 6.57 -2.41 -0.02 2.14 16 11 C -0.12 -2.50 6.25 -24.47 -0.15 -2.65 16 12 C 0.25 6.40 0.85 -89.94 -0.08 6.32 16 13 O -0.58 -15.74 13.07 -35.23 -0.46 -16.20 16 14 C -0.54 -14.63 8.11 -34.44 -0.28 -14.91 16 15 H 0.07 1.80 7.77 -52.48 -0.41 1.39 16 16 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 17 N -0.89 -24.88 10.97 55.43 0.61 -24.28 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.12 3.25 5.39 -3.06 -0.02 3.23 16 23 C -0.09 -0.44 7.25 -25.83 -0.19 -0.63 16 24 C -0.14 -0.57 7.82 -25.83 -0.20 -0.77 16 25 C -0.10 -0.71 6.81 -25.92 -0.18 -0.88 16 26 H 0.09 0.97 7.15 -51.93 -0.37 0.60 16 27 H 0.11 0.76 8.14 -51.92 -0.42 0.33 16 28 H 0.11 0.50 7.67 -51.92 -0.40 0.10 16 29 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 30 H 0.06 0.90 6.87 -51.93 -0.36 0.54 16 31 H 0.40 6.59 5.83 -40.82 -0.24 6.35 16 32 H 0.05 0.91 7.30 -51.93 -0.38 0.53 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 36 H 0.38 10.55 7.22 45.56 0.33 10.88 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.06 1.78 7.81 -51.93 -0.41 1.38 16 39 H 0.06 1.75 8.01 -51.93 -0.42 1.34 16 40 H 0.09 0.50 8.00 -51.93 -0.42 0.09 16 41 H 0.08 0.20 7.63 -51.92 -0.40 -0.20 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 45 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -37.55 370.98 -9.43 -46.97 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -6.38 Total: 15.64 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.97 Total: 5.03 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.30 Total: -53.02 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.96 Total: -45.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 10.24 SS G_CDS: -1.39 Total: 8.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.55 -9.43 -46.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -37.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds