Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42100 * 109.47029 * 2 1 4 4 C 1.81407 * 102.99926 * 243.61634 * 2 1 3 5 5 C 1.52998 * 112.84882 * 302.89847 * 4 2 1 6 6 N 1.46503 * 109.47129 * 287.20005 * 5 4 2 7 7 C 1.34770 * 120.00211 * 174.86828 * 6 5 4 8 8 O 1.21589 * 119.99795 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00400 * 180.02562 * 7 6 5 10 10 C 1.47429 * 125.64408 * 359.95061 * 9 7 6 11 11 C 1.55124 * 104.94139 * 204.03930 * 10 9 7 12 12 C 1.55156 * 101.48794 * 323.22955 * 11 10 9 13 13 O 1.42904 * 110.71706 * 276.82566 * 12 11 10 14 14 C 1.50701 * 110.72183 * 153.73486 * 12 11 10 15 15 H 1.08006 * 119.99742 * 2.43089 * 14 12 11 16 16 C 1.37870 * 120.00059 * 182.16506 * 14 12 11 17 17 N 1.31521 * 120.00061 * 0.26941 * 16 14 12 18 18 Si 1.86804 * 120.00227 * 180.27276 * 16 14 12 19 19 H 1.48498 * 109.46768 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46913 * 119.99706 * 18 16 14 21 21 H 1.48501 * 109.46946 * 239.99977 * 18 16 14 22 22 C 1.47021 * 125.65228 * 180.02562 * 9 7 6 23 23 C 1.53782 * 113.61411 * 74.09869 * 4 2 1 24 24 C 1.53947 * 87.02156 * 89.22462 * 23 4 2 25 25 C 1.53776 * 87.11197 * 25.36441 * 24 23 4 26 26 H 1.08999 * 109.46918 * 171.77403 * 1 2 3 27 27 H 1.08999 * 109.47101 * 291.77229 * 1 2 3 28 28 H 1.09004 * 109.47163 * 51.77641 * 1 2 3 29 29 H 1.09001 * 109.47053 * 167.20259 * 5 4 2 30 30 H 1.08997 * 109.47344 * 47.19663 * 5 4 2 31 31 H 0.97006 * 119.99962 * 354.86631 * 6 5 4 32 32 H 1.08991 * 110.37000 * 323.00553 * 10 9 7 33 33 H 1.09001 * 110.36290 * 85.33366 * 10 9 7 34 34 H 1.08997 * 111.16449 * 205.13378 * 11 10 9 35 35 H 1.09011 * 110.93241 * 81.21944 * 11 10 9 36 36 H 0.96699 * 113.99693 * 177.55952 * 13 12 11 37 37 H 0.97003 * 119.99956 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.88361 * 59.48004 * 22 9 7 39 39 H 1.08998 * 109.87970 * 298.31648 * 22 9 7 40 40 H 1.09000 * 113.60811 * 203.75238 * 23 4 2 41 41 H 1.09008 * 113.60984 * 334.64570 * 23 4 2 42 42 H 1.08996 * 113.54430 * 270.80841 * 24 23 4 43 43 H 1.09011 * 113.74069 * 139.94311 * 24 23 4 44 44 H 1.09007 * 113.61413 * 220.08960 * 25 24 23 45 45 H 1.08996 * 113.61957 * 89.18560 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7855 -1.5835 5 6 1.6095 -2.1798 -1.7303 6 7 2.3249 -3.1210 -0.8651 7 6 1.8932 -4.3926 -0.7504 8 8 0.9097 -4.7584 -1.3646 9 7 2.5510 -5.2584 0.0460 10 6 3.7516 -4.9497 0.8439 11 6 4.4542 -6.3166 1.0545 12 6 3.2387 -7.2659 1.2237 13 8 2.7616 -7.2412 2.5706 14 6 3.5980 -8.6707 0.8133 15 1 4.6053 -8.9002 0.4981 16 6 2.6425 -9.6640 0.8453 17 7 1.4160 -9.3845 1.2291 18 14 3.0898 -11.4070 0.3438 19 1 4.5223 -11.4581 -0.0443 20 1 2.8526 -12.3268 1.4852 21 1 2.2501 -11.8214 -0.8088 22 6 2.1910 -6.6674 0.2617 23 6 1.9845 0.1232 -2.8012 24 6 3.4308 0.6162 -2.6144 25 6 3.7192 -0.7306 -1.9306 26 1 -0.3633 -1.0171 -0.1470 27 1 -0.3633 0.3812 0.9543 28 1 -0.3634 0.6359 -0.8074 29 1 1.6915 -2.5053 -2.7673 30 1 0.5590 -2.1474 -1.4415 31 1 3.1093 -2.8290 -0.3747 32 1 4.4037 -4.2669 0.2994 33 1 3.4684 -4.5200 1.8047 34 1 5.0711 -6.3077 1.9531 35 1 5.0446 -6.5899 0.1799 36 1 1.9792 -7.7893 2.7207 37 1 0.7438 -10.0835 1.2520 38 1 2.2090 -7.2041 -0.6868 39 1 1.1986 -6.7323 0.7079 40 1 1.8262 -0.4245 -3.7302 41 1 1.2336 0.8948 -2.6302 42 1 3.5160 1.4726 -1.9456 43 1 3.9715 0.7551 -3.5508 44 1 4.3670 -0.6473 -1.0578 45 1 4.0362 -1.5120 -2.6212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -85.201066 kcal Electronic energy + Delta-G solvation = -27249.263015 eV Core-core repulsion = 23394.607505 eV Total energy + Delta-G solvation = -3854.655510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97393 -39.02463 -37.34552 -35.98176 -34.28370 -34.02725 -32.18887 -30.25335 -29.43440 -28.24170 -27.52092 -26.05313 -24.97249 -23.21093 -22.36879 -20.41583 -19.70476 -19.47436 -17.82678 -17.32158 -17.07188 -16.52764 -15.93801 -15.49725 -15.14378 -15.03897 -14.91273 -14.33069 -14.23211 -14.09927 -13.84948 -13.47726 -12.95183 -12.88883 -12.81518 -12.76885 -12.72469 -12.27120 -12.13853 -12.03253 -11.66336 -11.57689 -11.41673 -11.07033 -10.84736 -10.81552 -10.66827 -10.65125 -10.47374 -10.17606 -10.13084 -9.65624 -9.33175 -8.94298 -8.67768 -8.45227 -8.31144 -7.77538 -6.28921 -4.37072 1.23154 2.27737 3.02286 3.20696 3.29535 3.32610 3.44908 3.70651 4.03819 4.19238 4.26920 4.45386 4.46873 4.53174 4.86525 4.99158 4.99880 5.09179 5.31363 5.36991 5.37557 5.39279 5.52073 5.60961 5.63166 5.69361 5.77272 5.81380 5.86449 6.01616 6.05602 6.09224 6.50568 6.66277 6.72223 6.88355 6.97374 7.25290 7.32091 7.60902 7.73757 8.02845 8.50070 8.66758 9.08890 9.31043 9.40591 10.78846 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.002813 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.148201 B = 9951.365105 C =10017.246350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.487 4.487 2 S 1.265 4.735 3 O -0.845 6.845 4 C -0.424 4.424 5 C 0.182 3.818 6 N -0.751 5.751 7 C 0.716 3.284 8 O -0.597 6.597 9 N -0.629 5.629 10 C 0.101 3.899 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.108 4.108 24 C -0.153 4.153 25 C -0.094 4.094 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.270 0.730 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 16.433 -2.596 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.462 4.538 3 O -0.840 6.840 4 C -0.521 4.521 5 C 0.057 3.943 6 N -0.409 5.409 7 C 0.418 3.582 8 O -0.476 6.476 9 N -0.366 5.366 10 C -0.022 4.022 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.395 6.395 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.533 5.533 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.000 4.000 23 C -0.147 4.147 24 C -0.190 4.190 25 C -0.132 4.132 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.614 16.872 -2.310 17.229 hybrid contribution -1.003 -0.143 -1.969 2.214 sum 1.611 16.729 -4.279 17.343 Atomic orbital electron populations 1.27627 1.20797 1.08605 1.07460 1.70737 0.87092 0.98356 0.97583 1.93068 1.73620 1.36869 1.80483 1.29469 1.04139 1.03681 1.14795 1.20628 0.95296 0.83283 0.95123 1.45089 1.33913 1.09897 1.52015 1.15473 0.82635 0.79974 0.80120 1.90900 1.28186 1.77566 1.50905 1.47950 1.29733 1.12784 1.46103 1.22305 0.86542 0.98589 0.94814 1.22763 0.98038 0.93051 1.01596 1.19498 0.87566 0.92405 0.79837 1.86085 1.51171 1.72617 1.29591 1.21557 0.97268 0.92967 1.45728 0.91525 1.25065 0.94703 0.99657 0.93831 1.69649 1.02343 1.34137 1.47191 0.86363 0.78721 0.83627 0.78275 1.19622 1.20768 1.20805 1.22878 1.00348 0.75963 1.00817 1.22805 0.97905 0.97160 0.96822 1.23094 0.96000 0.98134 1.01799 1.22508 0.91285 0.98369 1.01058 0.86395 0.87291 0.89886 0.91408 0.91078 0.77126 0.92500 0.91663 0.90522 0.90622 0.76473 0.92028 0.91872 0.91879 0.89220 0.91900 0.88497 0.90975 0.90762 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.89 10.41 101.05 1.05 -2.84 16 2 S 1.27 10.70 13.26 -107.50 -1.43 9.28 16 3 O -0.85 -11.25 16.22 -35.23 -0.57 -11.82 16 4 C -0.42 -3.64 0.82 -89.81 -0.07 -3.71 16 5 C 0.18 1.93 5.04 -4.04 -0.02 1.91 16 6 N -0.75 -9.16 5.36 -65.23 -0.35 -9.51 16 7 C 0.72 12.87 8.49 -86.93 -0.74 12.13 16 8 O -0.60 -13.26 16.67 5.29 0.09 -13.17 16 9 N -0.63 -11.80 3.33 -176.11 -0.59 -12.38 16 10 C 0.10 1.55 6.57 -2.41 -0.02 1.53 16 11 C -0.12 -2.13 6.24 -24.47 -0.15 -2.28 16 12 C 0.25 5.66 0.85 -89.94 -0.08 5.59 16 13 O -0.59 -13.97 13.08 -35.23 -0.46 -14.43 16 14 C -0.54 -13.54 8.11 -34.44 -0.28 -13.82 16 15 H 0.07 1.66 7.77 -52.48 -0.41 1.25 16 16 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 17 N -0.89 -23.15 10.97 55.43 0.61 -22.54 16 18 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.12 2.81 5.39 -3.07 -0.02 2.79 16 23 C -0.11 -0.96 7.19 -25.83 -0.19 -1.15 16 24 C -0.15 -1.38 7.67 -25.83 -0.20 -1.58 16 25 C -0.09 -0.76 6.59 -25.92 -0.17 -0.94 16 26 H 0.12 0.89 6.68 -51.92 -0.35 0.54 16 27 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 30 H 0.07 0.76 6.32 -51.93 -0.33 0.44 16 31 H 0.39 3.74 6.51 -40.82 -0.27 3.48 16 32 H 0.06 0.66 7.30 -51.93 -0.38 0.28 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.35 8.03 -51.92 -0.42 0.93 16 36 H 0.38 9.52 7.21 45.56 0.33 9.85 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.06 1.61 7.81 -51.93 -0.41 1.20 16 39 H 0.06 1.60 8.01 -51.93 -0.42 1.18 16 40 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 41 H 0.06 0.58 8.10 -51.92 -0.42 0.16 16 42 H 0.10 1.06 6.69 -51.93 -0.35 0.71 16 43 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -32.80 369.90 -9.43 -42.23 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.32 Total: 12.48 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.97 Total: -0.69 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.33 Total: -44.44 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.94 Total: -39.42 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 10.70 SS G_CDS: -1.43 Total: 9.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.80 -9.43 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.969 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds