Wall clock time and date at job start Tue Mar 31 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42107 * 109.47491 * 2 1 4 4 C 1.81401 * 103.00071 * 243.61266 * 2 1 3 5 5 C 1.52995 * 112.84694 * 302.29302 * 4 2 1 6 6 N 1.46507 * 109.47525 * 283.30409 * 5 4 2 7 7 C 1.34771 * 119.99953 * 175.85064 * 6 5 4 8 8 O 1.21588 * 120.00589 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99712 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.64748 * 0.02562 * 9 7 6 11 11 C 1.54326 * 107.27278 * 181.04195 * 10 9 7 12 12 C 1.55448 * 102.96608 * 22.19221 * 11 10 9 13 13 O 1.42902 * 111.01225 * 82.52793 * 12 11 10 14 14 C 1.50705 * 111.11912 * 206.46501 * 12 11 10 15 15 H 1.07994 * 120.00108 * 114.32969 * 14 12 11 16 16 C 1.37878 * 119.99766 * 294.33455 * 14 12 11 17 17 N 1.31514 * 119.99546 * 181.64303 * 16 14 12 18 18 Si 1.86800 * 120.00337 * 1.64186 * 16 14 12 19 19 H 1.48502 * 109.46990 * 84.64410 * 18 16 14 20 20 H 1.48494 * 109.47280 * 204.64790 * 18 16 14 21 21 H 1.48497 * 109.47108 * 324.64806 * 18 16 14 22 22 C 1.47422 * 125.64712 * 179.97438 * 9 7 6 23 23 C 1.53780 * 113.69083 * 73.56297 * 4 2 1 24 24 C 1.53781 * 87.07998 * 89.13036 * 23 4 2 25 25 C 1.53776 * 87.08461 * 25.43126 * 24 23 4 26 26 H 1.08998 * 109.47439 * 174.00469 * 1 2 3 27 27 H 1.09003 * 109.47458 * 294.01098 * 1 2 3 28 28 H 1.09003 * 109.46952 * 54.00777 * 1 2 3 29 29 H 1.09002 * 109.47146 * 163.30647 * 5 4 2 30 30 H 1.09000 * 109.47522 * 43.30578 * 5 4 2 31 31 H 0.96996 * 119.99515 * 355.85279 * 6 5 4 32 32 H 1.08997 * 109.88605 * 300.46080 * 10 9 7 33 33 H 1.08997 * 109.88245 * 61.47279 * 10 9 7 34 34 H 1.08997 * 110.72295 * 140.55523 * 11 10 9 35 35 H 1.09003 * 110.72109 * 263.83864 * 11 10 9 36 36 H 0.96696 * 114.00051 * 186.49973 * 13 12 11 37 37 H 0.97001 * 119.99909 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.37133 * 274.73190 * 22 9 7 39 39 H 1.09008 * 110.36871 * 36.94386 * 22 9 7 40 40 H 1.08997 * 113.61326 * 203.67576 * 23 4 2 41 41 H 1.08990 * 113.61515 * 334.57744 * 23 4 2 42 42 H 1.09002 * 113.61073 * 270.88262 * 24 23 4 43 43 H 1.08996 * 113.61831 * 139.98357 * 24 23 4 44 44 H 1.09004 * 113.61524 * 220.02069 * 25 24 23 45 45 H 1.09004 * 113.61330 * 89.11793 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2220 -0.7855 -1.5834 5 6 1.6217 -2.1858 -1.7240 6 7 2.4071 -3.1357 -0.9319 7 6 2.0135 -4.4212 -0.8369 8 8 1.0064 -4.7925 -1.4081 9 7 2.7357 -5.2949 -0.1079 10 6 3.9670 -4.9816 0.6318 11 6 4.4519 -6.2906 1.2898 12 6 3.7786 -7.3887 0.4196 13 8 4.5366 -7.6398 -0.7655 14 6 3.5758 -8.6573 1.2074 15 1 2.5764 -9.0027 1.4269 16 6 4.6662 -9.3770 1.6479 17 7 4.4894 -10.5010 2.3074 18 14 6.3947 -8.7555 1.3079 19 1 6.7850 -7.7795 2.3569 20 1 7.3426 -9.8986 1.3180 21 1 6.4306 -8.0945 -0.0213 22 6 2.4213 -6.7228 0.0807 23 6 1.9728 0.1170 -2.8033 24 6 3.4132 0.6245 -2.6233 25 6 3.7170 -0.7178 -1.9374 26 1 -0.3634 -1.0220 -0.1073 27 1 -0.3634 0.4182 0.9387 28 1 -0.3633 0.6040 -0.8315 29 1 1.6390 -2.4850 -2.7720 30 1 0.5924 -2.1775 -1.3654 31 1 3.2102 -2.8394 -0.4760 32 1 4.7269 -4.6080 -0.0545 33 1 3.7594 -4.2340 1.3974 34 1 5.5378 -6.3694 1.2374 35 1 4.1089 -6.3533 2.3226 36 1 4.1069 -8.2435 -1.3867 37 1 5.2565 -11.0075 2.6170 38 1 1.7192 -6.8511 0.9046 39 1 2.0101 -7.1451 -0.8363 40 1 1.8169 -0.4350 -3.7301 41 1 1.2156 0.8822 -2.6328 42 1 3.4934 1.4834 -1.9569 43 1 3.9472 0.7654 -3.5630 44 1 4.3680 -0.6264 -1.0679 45 1 4.0381 -1.4980 -2.6276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:42 Heat of formation + Delta-G solvation = -72.961734 kcal Electronic energy + Delta-G solvation = -27274.644143 eV Core-core repulsion = 23420.519370 eV Total energy + Delta-G solvation = -3854.124773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17253 -39.19868 -37.64033 -36.06627 -34.53287 -34.20478 -32.42489 -30.50341 -29.56266 -28.56469 -27.87032 -26.12655 -25.10531 -23.19619 -22.41842 -20.47890 -19.95876 -19.69424 -18.14975 -17.43236 -17.25941 -16.59720 -16.08508 -15.61838 -15.35851 -15.07717 -14.91147 -14.63628 -14.44643 -14.18319 -13.97730 -13.72026 -13.45340 -12.93341 -12.83454 -12.82566 -12.82212 -12.49019 -12.39435 -12.15679 -11.95472 -11.65767 -11.63328 -11.43643 -11.08784 -10.91063 -10.75459 -10.55010 -10.36934 -10.21857 -10.15461 -9.86126 -9.10056 -9.02197 -8.75403 -8.55309 -8.50321 -7.98491 -6.22521 -4.34925 1.14924 2.19194 2.82234 3.28532 3.36752 3.41819 3.48226 3.62853 3.91736 4.11520 4.30948 4.39040 4.42103 4.42987 4.77765 4.90710 5.00654 5.07804 5.14079 5.22525 5.30064 5.31039 5.33590 5.45576 5.53042 5.54372 5.57580 5.68846 5.73936 5.77765 5.84797 5.99822 6.08973 6.45255 6.49906 6.54900 6.61090 6.63765 7.09969 7.29513 7.48716 8.17149 8.25420 8.72076 8.84894 8.89018 9.40695 10.87730 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.002949 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.876074 B = 9492.439537 C = 9682.517800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.488 4.488 2 S 1.266 4.734 3 O -0.843 6.843 4 C -0.425 4.425 5 C 0.183 3.817 6 N -0.748 5.748 7 C 0.721 3.279 8 O -0.598 6.598 9 N -0.626 5.626 10 C 0.102 3.898 11 C -0.123 4.123 12 C 0.215 3.785 13 O -0.570 6.570 14 C -0.551 4.551 15 H 0.079 0.921 16 C 0.088 3.912 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.283 1.283 20 H -0.302 1.302 21 H -0.221 1.221 22 C 0.112 3.888 23 C -0.108 4.108 24 C -0.153 4.153 25 C -0.095 4.095 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.396 0.604 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.364 0.636 37 H 0.267 0.733 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 19.908 -4.962 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 1.463 4.537 3 O -0.839 6.839 4 C -0.522 4.522 5 C 0.057 3.943 6 N -0.405 5.405 7 C 0.423 3.577 8 O -0.477 6.477 9 N -0.363 5.363 10 C -0.022 4.022 11 C -0.161 4.161 12 C 0.174 3.826 13 O -0.376 6.376 14 C -0.588 4.588 15 H 0.097 0.903 16 C -0.117 4.117 17 N -0.524 5.524 18 Si 0.700 3.300 19 H -0.210 1.210 20 H -0.229 1.229 21 H -0.144 1.144 22 C -0.011 4.011 23 C -0.146 4.146 24 C -0.190 4.190 25 C -0.133 4.133 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.212 0.788 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.447 20.311 -4.373 20.919 hybrid contribution -0.037 1.007 -1.766 2.033 sum -2.484 21.318 -6.138 22.322 Atomic orbital electron populations 1.27634 1.20895 1.08598 1.07431 1.70721 0.87030 0.98472 0.97506 1.93081 1.73574 1.36786 1.80416 1.29493 1.04253 1.03570 1.14856 1.20650 0.94181 0.83088 0.96392 1.45054 1.30874 1.08226 1.56392 1.15400 0.82708 0.80085 0.79556 1.90900 1.27021 1.77959 1.51813 1.47686 1.26620 1.10787 1.51168 1.22033 0.86345 0.98982 0.94797 1.22942 1.00739 0.92372 1.00002 1.20207 0.85546 0.93044 0.83771 1.86535 1.49088 1.69326 1.32661 1.21117 0.95502 1.06413 1.35797 0.90286 1.24942 0.99897 0.93946 0.92915 1.69931 1.31657 1.14384 1.36401 0.87128 0.83067 0.78230 0.81558 1.21004 1.22921 1.14357 1.22897 0.99720 0.77460 1.01020 1.22784 0.97958 0.97187 0.96715 1.23067 0.96006 0.98118 1.01846 1.22514 0.91251 0.98466 1.01084 0.86433 0.87344 0.89821 0.91280 0.91016 0.76943 0.92344 0.92228 0.90971 0.89222 0.78839 0.92358 0.91125 0.91369 0.89202 0.91880 0.88447 0.90930 0.90736 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.33 10.38 101.05 1.05 -2.28 16 2 S 1.27 9.49 13.26 -107.50 -1.43 8.06 16 3 O -0.84 -10.63 16.22 -35.23 -0.57 -11.20 16 4 C -0.42 -3.28 0.87 -89.81 -0.08 -3.35 16 5 C 0.18 1.70 5.13 -4.04 -0.02 1.67 16 6 N -0.75 -8.11 5.34 -65.22 -0.35 -8.46 16 7 C 0.72 11.39 8.49 -86.92 -0.74 10.65 16 8 O -0.60 -11.68 16.60 5.29 0.09 -11.60 16 9 N -0.63 -10.26 3.33 -176.23 -0.59 -10.85 16 10 C 0.10 1.45 6.15 -3.07 -0.02 1.43 16 11 C -0.12 -2.23 5.02 -24.74 -0.12 -2.36 16 12 C 0.21 4.47 0.69 -89.45 -0.06 4.41 16 13 O -0.57 -11.81 10.04 -35.23 -0.35 -12.17 16 14 C -0.55 -13.95 8.86 -34.44 -0.31 -14.26 16 15 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 16 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 17 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 18 Si 0.87 20.21 24.21 -169.99 -4.12 16.09 16 19 H -0.28 -6.34 7.04 56.52 0.40 -5.95 16 20 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.22 -4.98 5.39 56.52 0.30 -4.68 16 22 C 0.11 2.13 6.07 -2.52 -0.02 2.11 16 23 C -0.11 -0.88 7.18 -25.92 -0.19 -1.07 16 24 C -0.15 -1.31 7.66 -25.92 -0.20 -1.51 16 25 C -0.09 -0.73 6.40 -25.92 -0.17 -0.89 16 26 H 0.12 0.70 6.73 -51.93 -0.35 0.35 16 27 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.72 7.83 -51.93 -0.41 0.32 16 30 H 0.07 0.65 6.31 -51.93 -0.33 0.32 16 31 H 0.40 3.37 6.87 -40.82 -0.28 3.09 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.36 5.45 -51.93 -0.28 1.07 16 35 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 36 H 0.36 6.76 9.11 45.56 0.41 7.17 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.38 8.02 -51.93 -0.42 0.96 16 39 H 0.07 1.35 8.04 -51.92 -0.42 0.93 16 40 H 0.09 0.68 7.89 -51.93 -0.41 0.27 16 41 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.10 1.02 6.68 -51.93 -0.35 0.68 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.09 0.74 8.10 -51.93 -0.42 0.31 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -35.00 363.20 -8.30 -43.30 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.27 Total: 9.27 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.96 Total: -3.18 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.16 Total: -44.05 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.84 Total: -34.96 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.12 Total: 16.09 kcal Atomic # 16 Polarization: 9.49 SS G_CDS: -1.43 Total: 8.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.00 -8.30 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.666 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds