Wall clock time and date at job start Tue Mar 31 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47036 * 2 1 4 4 C 1.46772 * 124.34929 * 90.00491 * 3 2 1 5 5 C 1.54477 * 105.47225 * 163.00558 * 4 3 2 6 6 H 1.09004 * 110.96532 * 267.25251 * 5 4 3 7 7 C 1.52998 * 110.97031 * 143.53583 * 5 4 3 8 8 N 1.46497 * 109.47392 * 174.99383 * 7 5 4 9 9 S 1.65600 * 120.00208 * 164.99632 * 8 7 5 10 10 O 1.42094 * 104.28044 * 181.07552 * 9 8 7 11 11 O 1.42098 * 104.27807 * 308.93405 * 9 8 7 12 12 C 1.81399 * 104.45050 * 65.00090 * 9 8 7 13 13 C 1.52994 * 109.47584 * 173.86250 * 12 9 8 14 14 C 1.50699 * 115.54787 * 39.91995 * 13 12 9 15 15 H 1.08004 * 120.00483 * 264.79610 * 14 13 12 16 16 C 1.37881 * 119.99873 * 84.79776 * 14 13 12 17 17 N 1.31515 * 119.99995 * 353.00693 * 16 14 13 18 18 Si 1.86801 * 119.99922 * 173.00421 * 16 14 13 19 19 H 1.48504 * 109.46883 * 60.00114 * 18 16 14 20 20 H 1.48502 * 109.47001 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47312 * 300.00212 * 18 16 14 22 22 C 1.52999 * 117.49856 * 254.21535 * 13 12 9 23 23 C 1.52999 * 60.00128 * 252.50847 * 22 13 12 24 24 C 1.54626 * 101.76894 * 25.41245 * 5 4 3 25 25 C 1.34422 * 124.35105 * 270.02197 * 3 2 1 26 26 O 1.21273 * 124.94318 * 0.39408 * 25 3 2 27 27 H 1.09002 * 109.46956 * 299.99705 * 1 2 3 28 28 H 1.09000 * 109.46901 * 59.99717 * 1 2 3 29 29 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46956 * 240.00295 * 2 1 3 31 31 H 1.09004 * 109.47388 * 120.00372 * 2 1 3 32 32 H 1.08996 * 110.24316 * 43.99870 * 4 3 2 33 33 H 1.08998 * 110.24027 * 282.00005 * 4 3 2 34 34 H 1.09003 * 109.47406 * 54.99133 * 7 5 4 35 35 H 1.08999 * 109.47040 * 294.99850 * 7 5 4 36 36 H 0.96993 * 120.00049 * 345.00121 * 8 7 5 37 37 H 1.08999 * 109.47227 * 293.86856 * 12 9 8 38 38 H 1.09007 * 109.46492 * 53.85974 * 12 9 8 39 39 H 0.96995 * 120.00197 * 185.02985 * 17 16 14 40 40 H 1.08998 * 117.50041 * 0.02562 * 22 13 12 41 41 H 1.09007 * 117.50118 * 145.01848 * 22 13 12 42 42 H 1.08997 * 117.49590 * 252.51503 * 23 22 13 43 43 H 1.08994 * 117.49975 * 107.49028 * 23 22 13 44 44 H 1.09000 * 110.48305 * 93.88072 * 24 5 4 45 45 H 1.09000 * 110.48413 * 216.52678 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2945 2.1619 1.2118 5 6 3.1740 3.3444 0.7486 6 1 4.2328 3.1041 0.8451 7 6 2.8317 4.6181 1.5241 8 7 3.7617 5.6850 1.1459 9 16 3.4176 7.2584 1.5310 10 8 4.5068 7.9967 0.9947 11 8 2.0937 7.4546 1.0535 12 6 3.4527 7.2987 3.3442 13 6 3.2982 8.7427 3.8254 14 6 2.3073 9.5806 3.0593 15 1 2.6453 10.2136 2.2521 16 6 0.9691 9.5391 3.3887 17 7 0.5369 8.6697 4.2759 18 14 -0.2301 10.7177 2.5750 19 1 -0.2156 10.5026 1.1057 20 1 -1.5980 10.4718 3.0983 21 1 0.1699 12.1161 2.8746 22 6 4.5448 9.4432 4.3696 23 6 3.4342 9.0055 5.3266 24 6 2.7687 3.4757 -0.7378 25 6 2.2708 2.0964 -1.1098 26 8 2.1210 1.6946 -2.2442 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.8328 1.5531 1.9381 33 1 1.3638 2.5304 1.6432 34 1 2.9151 4.4257 2.5938 35 1 1.8124 4.9240 1.2885 36 1 4.5789 5.4698 0.6698 37 1 2.6344 6.6952 3.7370 38 1 4.4024 6.8973 3.6981 39 1 -0.4132 8.5904 4.4544 40 1 5.4752 8.8755 4.3843 41 1 4.6486 10.5105 4.1734 42 1 2.8072 9.7847 5.7598 43 1 3.6338 8.1497 5.9713 44 1 1.9734 4.2122 -0.8526 45 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593640921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:27 Heat of formation + Delta-G solvation = -87.834910 kcal Electronic energy + Delta-G solvation = -27030.041207 eV Core-core repulsion = 23175.271485 eV Total energy + Delta-G solvation = -3854.769722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68069 -37.13342 -36.75004 -36.13908 -35.58712 -34.91411 -33.23789 -32.06824 -29.83882 -28.24641 -28.14723 -25.51684 -25.23307 -23.45652 -21.24292 -21.20455 -19.80993 -19.49609 -18.59219 -17.08001 -17.06630 -16.59583 -16.31726 -15.70464 -15.43104 -15.10170 -14.71817 -14.59271 -14.22688 -14.08231 -13.83174 -13.73722 -13.52746 -13.12339 -12.87218 -12.78546 -12.38055 -12.24872 -12.21481 -11.82446 -11.64617 -11.39870 -11.28829 -11.14482 -11.03364 -11.01550 -10.93950 -10.82635 -10.55108 -10.37358 -10.13741 -9.93716 -9.73973 -9.25472 -8.98242 -8.93423 -8.55473 -8.13647 -6.18264 -4.32789 1.15026 2.44472 2.74741 3.34094 3.35757 3.43907 3.54084 4.09945 4.19009 4.38625 4.40850 4.67495 4.69355 4.80544 4.89285 5.01370 5.06955 5.10950 5.12269 5.15832 5.27364 5.34226 5.39294 5.46176 5.53483 5.59095 5.61072 5.73868 5.87646 5.90132 5.96003 6.13188 6.28026 6.31946 6.33073 6.58824 6.67712 6.88210 6.92602 7.14832 7.25886 7.37074 7.76658 8.00300 8.16494 8.75867 9.44586 10.89262 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003303 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.734478 B = 8473.848871 C = 8951.806095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.107 3.893 5 C -0.105 4.105 6 H 0.099 0.901 7 C 0.127 3.873 8 N -1.138 6.138 9 S 2.624 3.376 10 O -0.975 6.975 11 O -0.940 6.940 12 C -0.560 4.560 13 C 0.051 3.949 14 C -0.544 4.544 15 H 0.069 0.931 16 C 0.099 3.901 17 N -0.868 5.868 18 Si 0.890 3.110 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.205 4.205 23 C -0.144 4.144 24 C -0.154 4.154 25 C 0.519 3.481 26 O -0.535 6.535 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.265 0.735 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 -16.500 -1.322 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.017 4.017 5 C -0.125 4.125 6 H 0.117 0.883 7 C 0.000 4.000 8 N -0.894 5.894 9 S 2.720 3.280 10 O -0.965 6.965 11 O -0.930 6.930 12 C -0.693 4.693 13 C 0.049 3.951 14 C -0.581 4.581 15 H 0.087 0.913 16 C -0.108 4.108 17 N -0.502 5.502 18 Si 0.716 3.284 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.242 4.242 23 C -0.183 4.183 24 C -0.194 4.194 25 C 0.307 3.693 26 O -0.412 6.412 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.241 0.759 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.132 0.868 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.421 -16.125 -2.328 16.647 hybrid contribution -0.307 0.016 0.308 0.436 sum 3.114 -16.109 -2.019 16.531 Atomic orbital electron populations 1.22174 0.95709 1.02322 1.02748 1.21337 0.94500 0.81114 1.03005 1.48359 1.66144 1.13801 1.07362 1.22125 0.99970 0.92294 0.87301 1.22363 1.00985 0.94551 0.94644 0.88283 1.21209 0.94311 0.86074 0.98435 1.56137 1.32808 1.26249 1.74204 1.04658 0.74184 0.71050 0.78105 1.93491 1.56059 1.69051 1.77947 1.93533 1.38386 1.82793 1.78283 1.29974 1.07659 1.07470 1.24166 1.18157 0.94879 0.87465 0.94609 1.20566 0.91332 1.27567 1.18669 0.91332 1.24875 0.98152 0.94618 0.93180 1.69933 1.14973 1.33492 1.31768 0.86665 0.79670 0.81242 0.80817 1.19122 1.20997 1.19944 1.23129 0.92449 1.00563 1.08056 1.22529 1.00561 1.01595 0.93651 1.22513 1.04320 0.95696 0.96848 1.21002 0.76433 0.87590 0.84265 1.90712 1.53838 1.75401 1.21220 0.92179 0.92168 0.91477 0.90143 0.90342 0.89842 0.90226 0.91163 0.89493 0.75890 0.85512 0.88481 0.92508 0.91251 0.89709 0.89661 0.91639 0.86830 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.12 0.96 6.65 -4.04 -0.03 0.93 16 3 N -0.62 -5.91 2.93 -172.41 -0.51 -6.41 16 4 C 0.11 0.78 6.91 -3.12 -0.02 0.76 16 5 C -0.11 -0.87 3.19 -88.99 -0.28 -1.16 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 7 C 0.13 1.36 5.44 -4.04 -0.02 1.34 16 8 N -1.14 -14.99 5.83 -10.62 -0.06 -15.05 16 9 S 2.62 51.49 4.63 -107.50 -0.50 50.99 16 10 O -0.97 -21.61 18.08 -57.54 -1.04 -22.65 16 11 O -0.94 -22.08 16.63 -57.54 -0.96 -23.03 16 12 C -0.56 -10.98 6.18 37.15 0.23 -10.75 16 13 C 0.05 1.20 1.64 -155.66 -0.26 0.94 16 14 C -0.54 -14.58 6.89 -34.44 -0.24 -14.82 16 15 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 16 C 0.10 2.66 5.39 -17.82 -0.10 2.57 16 17 N -0.87 -23.26 12.96 55.43 0.72 -22.55 16 18 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.20 -4.32 9.88 -26.73 -0.26 -4.59 16 23 C -0.14 -3.18 9.50 -26.73 -0.25 -3.44 16 24 C -0.15 -1.61 6.36 -26.74 -0.17 -1.78 16 25 C 0.52 6.42 8.02 -10.86 -0.09 6.33 16 26 O -0.54 -8.70 17.59 5.56 0.10 -8.60 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.06 7.48 -51.93 -0.39 0.67 16 36 H 0.41 4.42 8.62 -34.47 -0.30 4.12 16 37 H 0.13 2.46 8.14 -51.92 -0.42 2.03 16 38 H 0.10 1.56 7.95 -51.92 -0.41 1.14 16 39 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.08 1.78 8.14 -51.92 -0.42 1.36 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.11 1.29 7.75 -51.93 -0.40 0.88 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.05 385.35 -9.93 -44.98 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.36 Total: 4.69 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -1.11 Total: -24.58 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.15 Total: -44.01 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -1.90 Total: -54.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.50 Total: 50.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.05 -9.93 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593640921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.856 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds