Wall clock time and date at job start Tue Mar 31 2020 04:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47036 * 2 1 4 4 C 1.46772 * 124.34929 * 90.00491 * 3 2 1 5 5 C 1.54477 * 105.47225 * 163.00558 * 4 3 2 6 6 H 1.09004 * 110.96532 * 267.25251 * 5 4 3 7 7 C 1.52998 * 110.97031 * 143.53583 * 5 4 3 8 8 N 1.46497 * 109.47392 * 174.99383 * 7 5 4 9 9 S 1.65600 * 120.00208 * 164.99632 * 8 7 5 10 10 O 1.42094 * 104.28044 * 181.07552 * 9 8 7 11 11 O 1.42098 * 104.27807 * 308.93405 * 9 8 7 12 12 C 1.81399 * 104.45050 * 65.00090 * 9 8 7 13 13 C 1.52994 * 109.47584 * 173.86250 * 12 9 8 14 14 C 1.50699 * 115.54787 * 39.91995 * 13 12 9 15 15 H 1.08004 * 120.00483 * 264.79610 * 14 13 12 16 16 C 1.37881 * 119.99873 * 84.79776 * 14 13 12 17 17 N 1.31515 * 119.99995 * 353.00693 * 16 14 13 18 18 Si 1.86801 * 119.99922 * 173.00421 * 16 14 13 19 19 H 1.48504 * 109.46883 * 60.00114 * 18 16 14 20 20 H 1.48502 * 109.47001 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47312 * 300.00212 * 18 16 14 22 22 C 1.52999 * 117.49856 * 254.21535 * 13 12 9 23 23 C 1.52999 * 60.00128 * 252.50847 * 22 13 12 24 24 C 1.54626 * 101.76894 * 25.41245 * 5 4 3 25 25 C 1.34422 * 124.35105 * 270.02197 * 3 2 1 26 26 O 1.21273 * 124.94318 * 0.39408 * 25 3 2 27 27 H 1.09002 * 109.46956 * 299.99705 * 1 2 3 28 28 H 1.09000 * 109.46901 * 59.99717 * 1 2 3 29 29 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46956 * 240.00295 * 2 1 3 31 31 H 1.09004 * 109.47388 * 120.00372 * 2 1 3 32 32 H 1.08996 * 110.24316 * 43.99870 * 4 3 2 33 33 H 1.08998 * 110.24027 * 282.00005 * 4 3 2 34 34 H 1.09003 * 109.47406 * 54.99133 * 7 5 4 35 35 H 1.08999 * 109.47040 * 294.99850 * 7 5 4 36 36 H 0.96993 * 120.00049 * 345.00121 * 8 7 5 37 37 H 1.08999 * 109.47227 * 293.86856 * 12 9 8 38 38 H 1.09007 * 109.46492 * 53.85974 * 12 9 8 39 39 H 0.96995 * 120.00197 * 185.02985 * 17 16 14 40 40 H 1.08998 * 117.50041 * 0.02562 * 22 13 12 41 41 H 1.09007 * 117.50118 * 145.01848 * 22 13 12 42 42 H 1.08997 * 117.49590 * 252.51503 * 23 22 13 43 43 H 1.08994 * 117.49975 * 107.49028 * 23 22 13 44 44 H 1.09000 * 110.48305 * 93.88072 * 24 5 4 45 45 H 1.09000 * 110.48413 * 216.52678 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2945 2.1619 1.2118 5 6 3.1740 3.3444 0.7486 6 1 4.2328 3.1041 0.8451 7 6 2.8317 4.6181 1.5241 8 7 3.7617 5.6850 1.1459 9 16 3.4176 7.2584 1.5310 10 8 4.5068 7.9967 0.9947 11 8 2.0937 7.4546 1.0535 12 6 3.4527 7.2987 3.3442 13 6 3.2982 8.7427 3.8254 14 6 2.3073 9.5806 3.0593 15 1 2.6453 10.2136 2.2521 16 6 0.9691 9.5391 3.3887 17 7 0.5369 8.6697 4.2759 18 14 -0.2301 10.7177 2.5750 19 1 -0.2156 10.5026 1.1057 20 1 -1.5980 10.4718 3.0983 21 1 0.1699 12.1161 2.8746 22 6 4.5448 9.4432 4.3696 23 6 3.4342 9.0055 5.3266 24 6 2.7687 3.4757 -0.7378 25 6 2.2708 2.0964 -1.1098 26 8 2.1210 1.6946 -2.2442 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.8328 1.5531 1.9381 33 1 1.3638 2.5304 1.6432 34 1 2.9151 4.4257 2.5938 35 1 1.8124 4.9240 1.2885 36 1 4.5789 5.4698 0.6698 37 1 2.6344 6.6952 3.7370 38 1 4.4024 6.8973 3.6981 39 1 -0.4132 8.5904 4.4544 40 1 5.4752 8.8755 4.3843 41 1 4.6486 10.5105 4.1734 42 1 2.8072 9.7847 5.7598 43 1 3.6338 8.1497 5.9713 44 1 1.9734 4.2122 -0.8526 45 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593640921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:26 Heat of formation + Delta-G solvation = -113.517296 kcal Electronic energy + Delta-G solvation = -27031.154879 eV Core-core repulsion = 23175.271485 eV Total energy + Delta-G solvation = -3855.883394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50801 -38.48542 -38.12080 -37.74211 -36.65307 -36.41171 -34.12522 -34.02539 -30.61546 -29.80269 -28.98145 -27.46005 -26.07518 -24.16049 -22.91455 -22.01215 -21.42133 -20.48591 -20.02482 -18.47121 -18.22381 -17.76818 -17.52790 -16.86069 -16.75423 -16.53887 -16.32795 -15.72289 -15.52007 -15.29923 -14.87937 -14.79221 -14.57221 -14.32396 -13.86631 -13.75545 -13.69866 -13.62795 -13.20404 -13.01669 -13.00788 -12.88224 -12.76513 -12.72192 -12.46098 -12.40394 -12.22006 -12.03346 -12.00238 -11.87188 -11.77908 -11.51411 -10.91498 -10.82646 -10.48933 -10.31824 -9.83200 -9.73807 -8.20577 -6.36712 -0.35782 1.37957 1.41336 1.47556 1.50728 2.01522 2.27336 2.41662 3.09585 3.13383 3.31539 3.39805 3.44962 3.67073 3.78335 3.97478 4.08790 4.15561 4.27304 4.36943 4.40854 4.49594 4.57757 4.64541 4.64791 4.67583 4.70195 4.72997 4.82530 4.87581 4.91734 4.95771 5.03218 5.05310 5.23889 5.25611 5.28707 5.45770 5.62683 5.65780 5.72185 6.08448 6.25166 6.29227 6.71718 7.11329 7.40658 8.86086 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003303 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.734478 B = 8473.848871 C = 8951.806095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.105 3.895 5 C -0.090 4.090 6 H 0.127 0.873 7 C 0.117 3.883 8 N -1.118 6.118 9 S 2.632 3.368 10 O -1.008 7.008 11 O -0.990 6.990 12 C -0.553 4.553 13 C 0.015 3.985 14 C -0.559 4.559 15 H 0.045 0.955 16 C 0.065 3.935 17 N -0.880 5.880 18 Si 0.920 3.080 19 H -0.281 1.281 20 H -0.271 1.271 21 H -0.267 1.267 22 C -0.193 4.193 23 C -0.141 4.141 24 C -0.158 4.158 25 C 0.509 3.491 26 O -0.586 6.586 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.423 0.577 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.267 0.733 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -18.562 0.778 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.018 4.018 5 C -0.111 4.111 6 H 0.145 0.855 7 C -0.009 4.009 8 N -0.879 5.879 9 S 2.730 3.270 10 O -0.998 6.998 11 O -0.979 6.979 12 C -0.686 4.686 13 C 0.013 3.987 14 C -0.597 4.597 15 H 0.063 0.937 16 C -0.141 4.141 17 N -0.514 5.514 18 Si 0.745 3.255 19 H -0.207 1.207 20 H -0.196 1.196 21 H -0.192 1.192 22 C -0.230 4.230 23 C -0.180 4.180 24 C -0.198 4.198 25 C 0.298 3.702 26 O -0.467 6.467 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.759 -18.174 -0.189 18.788 hybrid contribution -0.710 0.622 -0.339 1.003 sum 4.050 -17.552 -0.528 18.021 Atomic orbital electron populations 1.22143 0.95702 1.03213 1.01504 1.21541 0.94498 0.80355 1.04081 1.48513 1.64662 1.14350 1.07305 1.22355 1.00567 0.92095 0.86780 1.22323 1.02813 0.93725 0.92198 0.85471 1.21492 0.92765 0.85969 1.00664 1.55491 1.33824 1.24579 1.74036 1.03996 0.72682 0.72132 0.78224 1.93437 1.56550 1.71112 1.78717 1.93476 1.40808 1.84316 1.79347 1.29831 1.10113 1.05149 1.23530 1.18310 0.95739 0.89341 0.95287 1.20717 0.92534 1.27926 1.18493 0.93711 1.25321 0.99186 0.95691 0.93876 1.69945 1.15146 1.34050 1.32302 0.86199 0.79293 0.80628 0.79335 1.20671 1.19562 1.19193 1.23213 0.93080 1.00492 1.06253 1.22476 1.00564 1.01802 0.93154 1.22540 1.03996 0.94319 0.98946 1.21341 0.76264 0.88419 0.84217 1.90674 1.56265 1.76501 1.23291 0.91583 0.95120 0.89608 0.91498 0.86778 0.86137 0.89704 0.88047 0.91453 0.74111 0.85229 0.84209 0.92387 0.87892 0.90594 0.92032 0.89169 0.88395 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.12 1.58 6.65 86.38 0.57 2.16 16 3 N -0.62 -10.49 2.93 -817.98 -2.40 -12.88 16 4 C 0.10 1.14 6.91 86.83 0.60 1.74 16 5 C -0.09 -1.21 3.19 -9.74 -0.03 -1.24 16 6 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 7 C 0.12 2.19 5.44 86.38 0.47 2.66 16 8 N -1.12 -26.90 5.83 -187.50 -1.09 -27.99 16 9 S 2.63 101.03 4.63 -56.49 -0.26 100.77 16 10 O -1.01 -44.21 18.08 -127.65 -2.31 -46.51 16 11 O -0.99 -47.29 16.63 -127.65 -2.12 -49.42 16 12 C -0.55 -20.27 6.18 71.98 0.45 -19.83 16 13 C 0.02 0.69 1.64 -52.93 -0.09 0.61 16 14 C -0.56 -30.27 6.89 25.60 0.18 -30.09 16 15 H 0.04 2.56 7.82 -2.91 -0.02 2.53 16 16 C 0.06 3.50 5.39 84.66 0.46 3.96 16 17 N -0.88 -46.93 12.96 21.45 0.28 -46.65 16 18 Si 0.92 44.15 29.55 68.60 2.03 46.18 16 19 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 C -0.19 -7.74 9.88 30.59 0.30 -7.44 16 23 C -0.14 -5.95 9.50 30.59 0.29 -5.66 16 24 C -0.16 -3.19 6.36 30.59 0.19 -2.99 16 25 C 0.51 12.48 8.02 87.90 0.71 13.19 16 26 O -0.59 -19.80 17.59 -3.01 -0.05 -19.86 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.90 7.89 -2.39 -0.02 0.88 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.42 7.98 8.62 -96.75 -0.83 7.15 16 37 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 38 H 0.14 3.83 7.95 -2.39 -0.02 3.81 16 39 H 0.27 13.63 8.32 -92.71 -0.77 12.86 16 40 H 0.10 3.40 8.08 -2.39 -0.02 3.38 16 41 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 42 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.10 2.29 7.75 -2.39 -0.02 2.27 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -79.22 385.35 -0.95 -80.17 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.15 Total: 20.76 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 4.83 Total: -44.56 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -3.21 Total: -87.53 kcal Atomic # 8 Polarization: -111.30 SS G_CDS: -4.48 Total: -115.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 101.03 SS G_CDS: -0.26 Total: 100.77 kcal Total: -79.22 -0.95 -80.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593640921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.346 kcal (2) G-P(sol) polarization free energy of solvation -79.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds