Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00171 * 2 1 4 4 O 1.21591 * 120.00009 * 173.45321 * 3 2 1 5 5 N 1.34779 * 120.00311 * 353.45500 * 3 2 1 6 6 C 1.46923 * 120.63540 * 159.76761 * 5 3 2 7 7 C 1.53191 * 108.77554 * 126.40933 * 6 5 3 8 8 C 1.53041 * 109.31143 * 54.64100 * 7 6 5 9 9 C 1.53043 * 109.53725 * 298.63229 * 8 7 6 10 10 H 1.09008 * 109.49689 * 301.41714 * 9 8 7 11 11 C 1.50698 * 109.52823 * 181.33260 * 9 8 7 12 12 H 1.08006 * 119.99629 * 0.08182 * 11 9 8 13 13 C 1.37872 * 120.00046 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00633 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99838 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47100 * 60.00125 * 15 13 11 17 17 H 1.48496 * 109.47079 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46669 * 300.00053 * 15 13 11 19 19 C 1.46927 * 120.62564 * 339.78698 * 5 3 2 20 20 C 1.46498 * 119.99683 * 179.97438 * 2 1 3 21 21 H 1.09000 * 110.01065 * 179.29769 * 20 2 1 22 22 C 1.53870 * 110.03051 * 300.67826 * 20 2 1 23 23 C 1.54169 * 108.70754 * 166.47414 * 22 20 2 24 24 S 1.82920 * 105.08190 * 332.08940 * 23 22 20 25 25 O 1.42098 * 109.35251 * 115.52489 * 24 23 22 26 26 O 1.42100 * 109.35472 * 248.58883 * 24 23 22 27 27 C 1.55052 * 110.02818 * 57.91979 * 20 2 1 28 28 H 1.08998 * 109.46760 * 92.24351 * 1 2 3 29 29 H 1.09001 * 109.47159 * 212.24436 * 1 2 3 30 30 H 1.09004 * 109.46693 * 332.24556 * 1 2 3 31 31 H 1.08998 * 109.58849 * 246.19903 * 6 5 3 32 32 H 1.09005 * 109.58385 * 6.62778 * 6 5 3 33 33 H 1.09002 * 109.49717 * 174.58518 * 7 6 5 34 34 H 1.09001 * 109.50220 * 294.65344 * 7 6 5 35 35 H 1.08996 * 109.46225 * 178.61609 * 8 7 6 36 36 H 1.08994 * 109.46270 * 58.64835 * 8 7 6 37 37 H 0.96999 * 120.00572 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.58316 * 113.79951 * 19 5 3 39 39 H 1.08996 * 109.70604 * 353.44813 * 19 5 3 40 40 H 1.09001 * 109.64667 * 286.32293 * 22 20 2 41 41 H 1.09005 * 109.64590 * 46.62271 * 22 20 2 42 42 H 1.08992 * 110.31889 * 90.99250 * 23 22 20 43 43 H 1.09002 * 110.31774 * 213.19192 * 23 22 20 44 44 H 1.08998 * 110.79195 * 316.54420 * 27 20 2 45 45 H 1.09007 * 110.78676 * 80.00573 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3489 1.1705 0.1201 5 7 1.4717 2.3306 -0.1330 6 6 2.0819 3.5967 0.2950 7 6 2.0362 4.5860 -0.8737 8 6 0.5940 4.7190 -1.3682 9 6 0.0963 3.3600 -1.8660 10 1 0.7450 3.0062 -2.6674 11 6 -1.3125 3.4980 -2.3830 12 1 -1.8042 4.4594 -2.3606 13 6 -1.9732 2.3974 -2.8858 14 7 -1.3744 1.2268 -2.9137 15 14 -3.7193 2.5687 -3.5274 16 1 -3.7416 3.5432 -4.6477 17 1 -4.2010 1.2495 -4.0099 18 1 -4.6030 3.0498 -2.4352 19 6 0.1201 2.3567 -0.7085 20 6 2.1974 -1.2688 0.0006 21 1 3.2709 -1.0798 -0.0121 22 6 1.8222 -2.0934 1.2442 23 6 2.3289 -3.5367 1.0520 24 16 2.3422 -3.7992 -0.7583 25 8 3.6795 -3.9982 -1.1954 26 8 1.3368 -4.7418 -1.1048 27 6 1.7929 -2.1160 -1.2334 28 1 -0.3633 -0.0402 -1.0269 29 1 -0.3633 -0.8692 0.5483 30 1 -0.3633 0.9095 0.4786 31 1 1.5258 4.0032 1.1397 32 1 3.1178 3.4230 0.5863 33 1 2.3978 5.5590 -0.5411 34 1 2.6670 4.2211 -1.6843 35 1 0.5548 5.4409 -2.1839 36 1 -0.0403 5.0605 -0.5503 37 1 -1.8394 0.4524 -3.2671 38 1 -0.5961 2.6620 0.0545 39 1 -0.1410 1.3654 -1.0788 40 1 2.2874 -1.6564 2.1278 41 1 0.7391 -2.0986 1.3674 42 1 3.3353 -3.6416 1.4570 43 1 1.6513 -4.2428 1.5319 44 1 0.7136 -2.0896 -1.3838 45 1 2.3175 -1.7747 -2.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594803813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -59.652864 kcal Electronic energy + Delta-G solvation = -28260.775577 eV Core-core repulsion = 24407.227920 eV Total energy + Delta-G solvation = -3853.547657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.33911 -37.65231 -37.10615 -36.44905 -36.07433 -34.08036 -33.26852 -31.65166 -30.03663 -29.40364 -27.26150 -25.44573 -25.04371 -23.83348 -22.07583 -21.10669 -19.66569 -19.06188 -18.91384 -16.96123 -16.93500 -16.59774 -16.20065 -15.73963 -15.62965 -15.25579 -14.69502 -14.57888 -14.32782 -14.20894 -13.91396 -13.39505 -13.15198 -12.97401 -12.65461 -12.58954 -12.30957 -12.28228 -12.22098 -12.17641 -12.08882 -11.82537 -11.63462 -11.13211 -11.06574 -10.86091 -10.77049 -10.55583 -10.52283 -10.35006 -10.29256 -9.88275 -9.70058 -9.14582 -8.90453 -8.58793 -8.39372 -7.68856 -6.23002 -4.26837 -0.08258 2.36987 2.98209 3.20009 3.26194 3.28831 3.42280 3.58262 3.88873 4.18191 4.27948 4.38755 4.43116 4.56548 4.64963 4.88044 5.10847 5.29852 5.34075 5.47165 5.50731 5.55920 5.59333 5.71672 5.78006 5.85724 5.94646 6.05084 6.25206 6.31174 6.38380 6.47236 6.58961 6.65055 6.79496 6.88536 6.92280 7.12009 7.37252 7.55626 7.69417 7.85130 8.18727 8.43180 8.77014 9.00977 9.39051 10.84487 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.004436 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.454687 B = 6310.610246 C = 7962.724763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.613 5.613 3 C 0.714 3.286 4 O -0.608 6.608 5 N -0.625 5.625 6 C 0.134 3.866 7 C -0.133 4.133 8 C -0.110 4.110 9 C 0.037 3.963 10 H 0.030 0.970 11 C -0.510 4.510 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.074 3.926 20 C 0.165 3.835 21 H 0.122 0.878 22 C -0.128 4.128 23 C -0.589 4.589 24 S 2.391 3.609 25 O -0.937 6.937 26 O -0.939 6.939 27 C -0.601 4.601 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.264 0.736 38 H 0.041 0.959 39 H 0.147 0.853 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -5.771 9.243 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.349 5.349 3 C 0.417 3.583 4 O -0.489 6.489 5 N -0.361 5.361 6 C 0.010 3.990 7 C -0.171 4.171 8 C -0.148 4.148 9 C 0.017 3.983 10 H 0.048 0.952 11 C -0.548 4.548 12 H 0.076 0.924 13 C -0.137 4.137 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.045 4.045 20 C 0.057 3.943 21 H 0.140 0.860 22 C -0.167 4.167 23 C -0.719 4.719 24 S 2.574 3.426 25 O -0.934 6.934 26 O -0.936 6.936 27 C -0.732 4.732 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.538 -6.726 8.706 11.901 hybrid contribution -1.416 0.845 0.008 1.649 sum 3.122 -5.881 8.714 10.966 Atomic orbital electron populations 1.22786 0.79059 1.02750 1.04323 1.46676 1.06662 1.03333 1.78236 1.15870 0.84652 0.80569 0.77200 1.90813 1.12261 1.86292 1.59491 1.47520 1.19555 1.04102 1.64900 1.21348 0.98308 0.83310 0.96025 1.21936 0.99173 0.97752 0.98267 1.21615 0.93468 1.00198 0.99531 1.19018 0.96309 0.89692 0.93244 0.95220 1.21147 0.98471 0.95111 1.40078 0.92373 1.24952 0.98110 0.95366 0.95276 1.69741 1.37341 0.99758 1.46789 0.86614 0.84455 0.77339 0.79370 1.20307 1.21186 1.20249 1.23463 0.78485 1.07672 0.94906 1.21368 0.99464 0.83721 0.89699 0.85989 1.22297 1.03607 0.90578 1.00265 1.30439 1.11128 1.05061 1.25235 1.08952 0.75677 0.78391 0.79621 1.93623 1.35318 1.84924 1.79494 1.93616 1.59936 1.58233 1.81771 1.31105 1.13591 1.20644 1.07881 0.88242 0.92811 0.89228 0.92737 0.90366 0.92358 0.92126 0.93168 0.93311 0.92657 0.94099 0.83639 0.88511 0.89126 0.84373 0.84277 0.83577 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 7.45 59.85 0.45 1.24 16 2 N -0.61 -9.82 2.82 -185.24 -0.52 -10.35 16 3 C 0.71 13.81 7.97 -86.92 -0.69 13.12 16 4 O -0.61 -13.01 15.29 5.29 0.08 -12.93 16 5 N -0.63 -11.99 2.90 -178.50 -0.52 -12.51 16 6 C 0.13 2.29 6.43 -3.71 -0.02 2.27 16 7 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 8 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 9 C 0.04 0.83 2.25 -91.65 -0.21 0.62 16 10 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 11 C -0.51 -12.54 8.56 -34.44 -0.29 -12.83 16 12 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 13 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 14 N -0.90 -21.93 10.67 55.43 0.59 -21.34 16 15 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.07 1.53 3.35 -3.71 -0.01 1.52 16 20 C 0.17 2.13 2.96 -66.39 -0.20 1.93 16 21 H 0.12 1.68 6.96 -51.93 -0.36 1.32 16 22 C -0.13 -1.19 5.88 -25.67 -0.15 -1.34 16 23 C -0.59 -4.43 7.26 37.77 0.27 -4.16 16 24 S 2.39 25.68 6.10 -107.50 -0.66 25.03 16 25 O -0.94 -13.25 18.14 -57.73 -1.05 -14.30 16 26 O -0.94 -13.01 18.15 -57.73 -1.05 -14.05 16 27 C -0.60 -7.08 6.79 38.24 0.26 -6.82 16 28 H 0.10 1.76 5.83 -51.93 -0.30 1.46 16 29 H 0.05 0.62 6.26 -51.93 -0.32 0.30 16 30 H 0.09 1.44 5.07 -51.93 -0.26 1.18 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.34 7.11 -51.93 -0.37 0.97 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 38 H 0.04 0.84 7.60 -51.93 -0.39 0.44 16 39 H 0.15 3.03 1.81 -60.96 -0.11 2.92 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.75 6.28 -51.93 -0.33 0.42 16 42 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.15 1.67 7.27 -51.93 -0.38 1.29 16 45 H 0.14 1.76 8.14 -51.92 -0.42 1.34 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -32.43 351.99 -10.43 -42.86 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.60 Total: 5.62 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.99 Total: -7.67 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.45 Total: -44.19 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.01 Total: -41.28 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 25.68 SS G_CDS: -0.66 Total: 25.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.43 -10.43 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594803813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.794 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds