Wall clock time and date at job start Tue Mar 31 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99766 * 2 1 4 4 C 1.50689 * 109.47564 * 275.00289 * 3 2 1 5 5 O 1.21284 * 119.99815 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00268 * 179.72702 * 4 3 2 7 7 C 1.47019 * 125.64475 * 359.96743 * 6 4 3 8 8 C 1.54319 * 107.27550 * 180.97232 * 7 6 4 9 9 C 1.55155 * 102.86382 * 22.52141 * 8 7 6 10 10 C 1.47423 * 125.64940 * 180.27380 * 6 4 3 11 11 S 1.65596 * 120.00119 * 180.02562 * 2 1 3 12 12 O 1.42102 * 104.27966 * 26.06817 * 11 2 1 13 13 O 1.42096 * 104.28106 * 153.93031 * 11 2 1 14 14 C 1.81409 * 104.44840 * 269.99730 * 11 2 1 15 15 C 1.52995 * 109.47085 * 174.01186 * 14 11 2 16 16 C 1.50704 * 115.55226 * 65.27751 * 15 14 11 17 17 H 1.07995 * 119.99755 * 268.55001 * 16 15 14 18 18 C 1.37875 * 119.99776 * 88.54099 * 16 15 14 19 19 N 1.31515 * 119.99676 * 174.69816 * 18 16 15 20 20 Si 1.86799 * 120.00281 * 354.70314 * 18 16 15 21 21 H 1.48498 * 109.46785 * 92.55153 * 20 18 16 22 22 H 1.48495 * 109.46999 * 212.54808 * 20 18 16 23 23 H 1.48495 * 109.47168 * 332.55054 * 20 18 16 24 24 C 1.53006 * 117.49907 * 279.60434 * 15 14 11 25 25 C 1.53001 * 117.49870 * 210.94381 * 15 14 11 26 26 H 1.09002 * 109.47251 * 89.99513 * 1 2 3 27 27 H 1.09000 * 109.47308 * 209.99748 * 1 2 3 28 28 H 1.09004 * 109.47408 * 329.99395 * 1 2 3 29 29 H 1.09008 * 109.46758 * 154.99808 * 3 2 1 30 30 H 1.09007 * 109.46776 * 35.00838 * 3 2 1 31 31 H 1.08995 * 109.88324 * 300.51102 * 7 6 4 32 32 H 1.08992 * 109.88661 * 61.68014 * 7 6 4 33 33 H 1.09004 * 110.91972 * 264.10948 * 8 7 6 34 34 H 1.08990 * 110.59384 * 140.78496 * 8 7 6 35 35 H 1.08992 * 111.00775 * 206.23385 * 9 8 7 36 36 H 1.09004 * 111.00263 * 82.37864 * 9 8 7 37 37 H 1.08994 * 110.37007 * 274.67259 * 10 6 4 38 38 H 1.09004 * 110.36502 * 36.88597 * 10 6 4 39 39 H 1.09003 * 109.46812 * 294.01621 * 14 11 2 40 40 H 1.08996 * 109.46963 * 54.00855 * 14 11 2 41 41 H 0.97000 * 119.99812 * 180.02562 * 19 18 16 42 42 H 1.08991 * 117.49710 * 0.02562 * 24 15 14 43 43 H 1.08995 * 117.49642 * 145.02335 * 24 15 14 44 44 H 1.08992 * 117.50105 * 214.98254 * 25 15 14 45 45 H 1.09002 * 117.49910 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7658 -1.4153 5 8 1.8781 1.1233 -2.3337 6 7 2.9804 2.9269 -1.6601 7 6 3.5815 3.8046 -0.6452 8 6 4.1750 5.0217 -1.3854 9 6 3.3727 5.0434 -2.7133 10 6 3.1870 3.5304 -2.9892 11 16 2.2930 -1.4341 -0.0006 12 8 1.3970 -2.3559 -0.6062 13 8 3.5395 -1.1189 -0.6057 14 6 2.5194 -1.8268 1.7559 15 6 3.1473 -3.2154 1.8912 16 6 4.5474 -3.3511 1.3505 17 1 4.7036 -3.6603 0.3276 18 6 5.6289 -3.0804 2.1617 19 7 6.8499 -3.2984 1.7242 20 14 5.3600 -2.4041 3.8821 21 1 5.2984 -3.5274 4.8514 22 1 6.4838 -1.5020 4.2405 23 1 4.0841 -1.6454 3.9218 24 6 2.2200 -4.4256 1.7628 25 6 2.7861 -4.0363 3.1308 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 3.1857 1.1177 0.4344 30 1 1.6500 2.0043 0.5896 31 1 2.8180 4.1334 0.0597 32 1 4.3725 3.2728 -0.1167 33 1 5.2381 4.8788 -1.5795 34 1 4.0051 5.9361 -0.8173 35 1 3.9467 5.5180 -3.5089 36 1 2.4101 5.5372 -2.5801 37 1 4.0801 3.1180 -3.4584 38 1 2.3152 3.3625 -3.6216 39 1 3.1752 -1.0853 2.2123 40 1 1.5523 -1.8148 2.2584 41 1 7.6107 -3.1083 2.2951 42 1 1.1628 -4.2325 1.5816 43 1 2.6228 -5.3201 1.2877 44 1 3.5610 -4.6748 3.5549 45 1 2.1015 -3.5869 3.8501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595364534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:22 Heat of formation + Delta-G solvation = -63.829276 kcal Electronic energy + Delta-G solvation = -27761.979817 eV Core-core repulsion = 23908.251058 eV Total energy + Delta-G solvation = -3853.728760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.04704 -37.61169 -37.13466 -36.35539 -35.56136 -35.04658 -32.17497 -31.95315 -29.52921 -28.53245 -28.33172 -25.62264 -25.14143 -23.34427 -21.72174 -21.42355 -19.70944 -19.35779 -18.27309 -17.40223 -17.25538 -16.59302 -16.52143 -16.07838 -15.41229 -15.14828 -14.77255 -14.55248 -14.07471 -13.91336 -13.80078 -13.52172 -13.36349 -13.04216 -12.89436 -12.64025 -12.56843 -12.40789 -12.33499 -11.95654 -11.63031 -11.48302 -11.38343 -11.20395 -11.16876 -11.06435 -11.02070 -10.93963 -10.66465 -10.38194 -10.20828 -10.04252 -9.73423 -9.16970 -8.91337 -8.71160 -8.67590 -8.42922 -6.17712 -4.25125 0.86469 2.68861 2.86282 3.19644 3.24877 3.29162 3.31806 4.20247 4.30765 4.32967 4.54195 4.58938 4.68428 4.73527 4.79993 4.84425 4.98855 5.04823 5.12260 5.18089 5.21183 5.37037 5.43874 5.44426 5.55626 5.56361 5.65117 5.67638 5.71280 5.87486 5.88164 5.95329 5.99593 6.03627 6.17499 6.19833 6.41978 6.59758 6.67505 6.87206 7.05941 7.43978 7.58491 8.21802 8.36504 8.88580 9.43048 10.93839 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.004276 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.425259 B = 6546.294957 C = 7562.371837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.998 5.998 3 C 0.112 3.888 4 C 0.515 3.485 5 O -0.522 6.522 6 N -0.625 5.625 7 C 0.094 3.906 8 C -0.132 4.132 9 C -0.133 4.133 10 C 0.104 3.896 11 S 2.612 3.388 12 O -0.957 6.957 13 O -0.932 6.932 14 C -0.578 4.578 15 C 0.000 4.000 16 C -0.509 4.509 17 H 0.087 0.913 18 C 0.088 3.912 19 N -0.882 5.882 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.257 1.257 24 C -0.177 4.177 25 C -0.184 4.184 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.267 0.733 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 18.416 0.038 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.833 5.833 3 C -0.018 4.018 4 C 0.302 3.698 5 O -0.396 6.396 6 N -0.362 5.362 7 C -0.029 4.029 8 C -0.170 4.170 9 C -0.171 4.171 10 C -0.019 4.019 11 S 2.708 3.292 12 O -0.947 6.947 13 O -0.922 6.922 14 C -0.709 4.709 15 C -0.003 4.003 16 C -0.546 4.546 17 H 0.105 0.895 18 C -0.116 4.116 19 N -0.517 5.517 20 Si 0.700 3.300 21 H -0.200 1.200 22 H -0.217 1.217 23 H -0.181 1.181 24 C -0.214 4.214 25 C -0.223 4.223 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.775 17.528 -1.191 20.105 hybrid contribution 0.000 0.668 1.754 1.877 sum -9.776 18.195 0.564 20.663 Atomic orbital electron populations 1.21420 0.78582 1.02255 1.02555 1.57708 1.15175 1.20512 1.89887 1.21030 0.99284 0.87682 0.93765 1.21017 0.77185 0.79105 0.92494 1.90708 1.47605 1.55088 1.46219 1.48542 1.57214 1.22056 1.08380 1.22117 0.97827 0.91404 0.91593 1.22634 1.00427 0.97492 0.96402 1.22785 1.00890 0.95570 0.97881 1.22215 1.02069 0.92022 0.85574 1.05283 0.73600 0.72270 0.78066 1.93506 1.65297 1.61790 1.74149 1.93580 1.43066 1.81944 1.73633 1.30380 1.07715 1.08702 1.24108 1.18861 0.96208 0.84724 1.00464 1.20357 0.85608 1.48181 1.00450 0.89519 1.24951 0.94746 0.93808 0.98116 1.69903 0.98219 1.46304 1.37314 0.86936 0.78154 0.79820 0.85049 1.20044 1.21668 1.18110 1.23031 0.97636 1.00725 1.00024 1.22991 1.03157 1.05255 0.90911 0.92139 0.90950 0.91652 0.86926 0.87710 0.91214 0.90724 0.90216 0.89958 0.89808 0.90690 0.91312 0.90464 0.85648 0.87534 0.92298 0.89972 0.88571 0.88873 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.22 59.85 0.61 1.87 16 2 N -1.00 -16.08 2.61 -123.05 -0.32 -16.40 16 3 C 0.11 1.53 4.95 -5.20 -0.03 1.51 16 4 C 0.52 8.24 7.91 -10.99 -0.09 8.16 16 5 O -0.52 -10.60 16.67 5.55 0.09 -10.51 16 6 N -0.62 -7.77 3.33 -170.53 -0.57 -8.34 16 7 C 0.09 0.79 6.48 -3.07 -0.02 0.77 16 8 C -0.13 -0.83 6.95 -24.90 -0.17 -1.00 16 9 C -0.13 -0.90 7.08 -24.58 -0.17 -1.08 16 10 C 0.10 1.11 6.91 -2.53 -0.02 1.10 16 11 S 2.61 55.10 5.06 -107.50 -0.54 54.56 16 12 O -0.96 -22.08 17.09 -57.54 -0.98 -23.07 16 13 O -0.93 -23.41 16.65 -57.54 -0.96 -24.37 16 14 C -0.58 -11.38 5.65 37.15 0.21 -11.17 16 15 C 0.00 0.01 0.79 -155.66 -0.12 -0.12 16 16 C -0.51 -14.35 8.77 -34.44 -0.30 -14.65 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 19 N -0.88 -26.69 13.96 55.43 0.77 -25.91 16 20 Si 0.87 20.67 24.96 -169.99 -4.24 16.43 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -5.52 5.68 56.52 0.32 -5.20 16 24 C -0.18 -3.70 9.96 -26.69 -0.27 -3.97 16 25 C -0.18 -3.82 7.67 -26.69 -0.20 -4.03 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 28 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 29 H 0.11 1.49 7.61 -51.92 -0.40 1.09 16 30 H 0.10 0.92 7.96 -51.92 -0.41 0.51 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 39 H 0.13 2.37 6.53 -51.92 -0.34 2.03 16 40 H 0.11 1.67 8.09 -51.93 -0.42 1.25 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 44 H 0.09 2.01 7.34 -51.93 -0.38 1.62 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -38.70 376.27 -9.22 -47.92 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.47 Total: 4.22 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -0.67 Total: -20.20 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -1.85 Total: -57.94 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.24 Total: 16.43 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.54 Total: 54.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.70 -9.22 -47.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595364534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.907 kcal (2) G-P(sol) polarization free energy of solvation -38.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds