Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42093 * 110.54309 * 2 1 4 4 O 1.42100 * 110.54226 * 223.24418 * 2 1 3 5 5 N 1.65602 * 104.44759 * 111.62250 * 2 1 3 6 6 C 1.47418 * 125.64887 * 275.17071 * 5 2 1 7 7 C 1.54907 * 104.83357 * 204.09292 * 6 5 2 8 8 C 1.55406 * 101.66775 * 323.07337 * 7 6 5 9 9 C 1.47031 * 125.64687 * 95.12556 * 5 2 1 10 10 H 1.08997 * 109.88051 * 59.40498 * 9 5 2 11 11 C 1.50697 * 109.87981 * 298.39442 * 9 5 2 12 12 O 1.21277 * 120.00451 * 333.98290 * 11 9 5 13 13 N 1.34775 * 119.99664 * 153.98458 * 11 9 5 14 14 C 1.46933 * 120.63347 * 355.21247 * 13 11 9 15 15 C 1.53191 * 108.78013 * 126.41129 * 14 13 11 16 16 C 1.53040 * 109.33718 * 54.61929 * 15 14 13 17 17 C 1.53041 * 109.53978 * 298.68613 * 16 15 14 18 18 H 1.09003 * 109.49409 * 301.34359 * 17 16 15 19 19 C 1.50701 * 109.49788 * 181.28872 * 17 16 15 20 20 H 1.08005 * 119.99459 * 333.75674 * 19 17 16 21 21 C 1.37875 * 120.00231 * 153.76637 * 19 17 16 22 22 N 1.31514 * 120.00110 * 6.31244 * 21 19 17 23 23 Si 1.86801 * 119.99925 * 186.31091 * 21 19 17 24 24 H 1.48496 * 109.47039 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47372 * 300.00115 * 23 21 19 26 26 H 1.48502 * 109.46995 * 59.99808 * 23 21 19 27 27 C 1.46931 * 120.63130 * 175.22925 * 13 11 9 28 28 H 1.08998 * 109.47032 * 301.56121 * 1 2 3 29 29 H 1.09004 * 109.46918 * 61.56254 * 1 2 3 30 30 H 1.09006 * 109.47151 * 181.55855 * 1 2 3 31 31 H 1.09000 * 110.36646 * 322.93042 * 6 5 2 32 32 H 1.08998 * 110.37207 * 85.14573 * 6 5 2 33 33 H 1.09001 * 111.00791 * 81.06130 * 7 6 5 34 34 H 1.08998 * 111.00978 * 204.87657 * 7 6 5 35 35 H 1.09003 * 110.69167 * 277.05242 * 8 7 6 36 36 H 1.08996 * 110.85809 * 153.69931 * 8 7 6 37 37 H 1.09001 * 109.58167 * 246.20532 * 14 13 11 38 38 H 1.09004 * 109.58209 * 6.62067 * 14 13 11 39 39 H 1.08999 * 109.49757 * 174.58636 * 15 14 13 40 40 H 1.08997 * 109.49739 * 294.65535 * 15 14 13 41 41 H 1.09003 * 109.48586 * 178.65009 * 16 15 14 42 42 H 1.09001 * 109.43259 * 58.68631 * 16 15 14 43 43 H 0.97001 * 119.99829 * 355.15575 * 22 21 19 44 44 H 1.09003 * 109.58371 * 113.80353 * 27 13 11 45 45 H 1.08992 * 109.70106 * 353.44736 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 2.3370 0.2017 2.7289 7 6 3.3028 -0.6054 3.6321 8 6 2.8955 -2.0678 3.2999 9 6 2.5444 -1.9932 1.7989 10 1 3.3958 -2.3203 1.2023 11 6 1.3498 -2.8646 1.5080 12 8 0.2325 -2.3945 1.5461 13 7 1.5232 -4.1664 1.2054 14 6 2.8731 -4.7262 1.0525 15 6 3.0068 -5.9480 1.9670 16 6 1.8785 -6.9357 1.6612 17 6 0.5277 -6.2710 1.9365 18 1 0.4847 -5.9522 2.9779 19 6 -0.5814 -7.2545 1.6654 20 1 -0.4291 -8.0597 0.9617 21 6 -1.7906 -7.1265 2.3154 22 7 -2.0205 -6.0786 3.0761 23 14 -3.1022 -8.4414 2.1156 24 1 -4.3002 -8.0704 2.9107 25 1 -3.4754 -8.5547 0.6827 26 1 -2.5739 -9.7443 2.5939 27 6 0.3659 -5.0529 1.0217 28 1 -0.3633 0.5379 0.8756 29 1 -0.3633 0.4894 -0.9037 30 1 -0.3634 -1.0273 0.0280 31 1 2.7526 1.1861 2.5136 32 1 1.3614 0.2984 3.2053 33 1 4.3413 -0.4194 3.3580 34 1 3.1326 -0.3808 4.6850 35 1 2.0260 -2.3678 3.8848 36 1 3.7286 -2.7503 3.4675 37 1 3.0289 -5.0265 0.0163 38 1 3.6133 -3.9769 1.3332 39 1 3.9690 -6.4294 1.7925 40 1 2.9415 -5.6320 3.0081 41 1 1.9852 -7.8169 2.2940 42 1 1.9303 -7.2326 0.6137 43 1 -1.3157 -5.4316 3.2363 44 1 0.3173 -5.3799 -0.0170 45 1 -0.5494 -4.5206 1.2804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -105.118664 kcal Electronic energy + Delta-G solvation = -28522.995076 eV Core-core repulsion = 24667.475874 eV Total energy + Delta-G solvation = -3855.519202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29066 -38.06764 -37.18730 -36.63367 -35.99440 -33.75451 -31.93963 -31.12583 -30.33067 -29.33568 -29.12450 -25.05951 -24.75215 -22.96124 -21.97415 -21.63015 -20.48978 -19.16625 -18.33249 -17.78562 -17.57187 -16.70157 -16.08113 -16.03656 -15.32179 -15.06852 -14.72506 -14.13706 -13.95192 -13.87422 -13.73497 -13.51566 -13.27356 -13.17155 -13.10992 -12.79701 -12.53178 -12.36727 -12.16278 -12.09002 -11.81135 -11.72755 -11.58018 -11.39549 -11.33825 -11.06693 -10.97764 -10.87142 -10.67105 -10.48770 -10.16849 -10.06416 -9.82288 -9.34007 -8.93818 -8.59113 -8.50182 -7.96999 -6.42073 -4.14749 0.23274 2.42935 2.85203 3.37940 3.41360 3.45090 3.61231 3.80565 3.97760 4.33092 4.46536 4.48991 4.67484 4.80172 4.89547 4.98298 5.12410 5.20750 5.29704 5.30529 5.35046 5.45551 5.53112 5.60463 5.65487 5.70441 5.80987 5.87482 5.97193 5.98528 6.02731 6.15606 6.20636 6.32510 6.44424 6.64467 6.71104 6.81456 6.92071 7.31338 7.46574 7.87556 8.13139 8.37471 8.49498 8.81067 9.58132 10.96897 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016908 B = 0.003954 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.667470 B = 7080.589888 C = 7563.868813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.624 3.376 3 O -0.961 6.961 4 O -0.955 6.955 5 N -0.992 5.992 6 C 0.115 3.885 7 C -0.124 4.124 8 C -0.115 4.115 9 C 0.133 3.867 10 H 0.101 0.899 11 C 0.491 3.509 12 O -0.544 6.544 13 N -0.595 5.595 14 C 0.104 3.896 15 C -0.135 4.135 16 C -0.105 4.105 17 C 0.024 3.976 18 H 0.033 0.967 19 C -0.598 4.598 20 H 0.051 0.949 21 C 0.023 3.977 22 N -0.904 5.904 23 Si 1.067 2.933 24 H -0.283 1.283 25 H -0.288 1.288 26 H -0.287 1.287 27 C 0.113 3.887 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.272 0.728 44 H 0.054 0.946 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.941 10.565 -0.256 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.719 3.281 3 O -0.952 6.952 4 O -0.945 6.945 5 N -0.829 5.829 6 C -0.010 4.010 7 C -0.163 4.163 8 C -0.154 4.154 9 C 0.023 3.977 10 H 0.119 0.881 11 C 0.276 3.724 12 O -0.423 6.423 13 N -0.327 5.327 14 C -0.019 4.019 15 C -0.173 4.173 16 C -0.143 4.143 17 C 0.005 3.995 18 H 0.051 0.949 19 C -0.637 4.637 20 H 0.070 0.930 21 C -0.183 4.183 22 N -0.539 5.539 23 Si 0.895 3.105 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.007 4.007 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.352 10.732 -0.605 14.923 hybrid contribution 0.857 0.115 -0.217 0.891 sum 11.209 10.847 -0.821 15.620 Atomic orbital electron populations 1.30534 1.26849 1.13586 1.10350 1.04418 0.78058 0.73611 0.71971 1.93577 1.78356 1.37648 1.85630 1.93596 1.78258 1.61515 1.61162 1.58434 1.84319 1.14850 1.25259 1.22092 0.99983 0.95024 0.83942 1.22778 0.99594 0.93969 0.99950 1.22626 1.02770 0.97936 0.92117 1.21383 0.96157 0.81029 0.99151 0.88136 1.20928 0.90733 0.83109 0.77599 1.90629 1.25488 1.73197 1.53025 1.48503 1.08558 1.08517 1.67135 1.21804 0.83508 0.96232 1.00335 1.21987 0.99558 0.96356 0.99421 1.21573 0.94988 0.97282 1.00461 1.19164 0.92863 0.92149 0.95361 0.94866 1.21853 0.99779 1.13581 1.28449 0.93044 1.25860 0.99299 0.99379 0.93772 1.70797 1.35514 1.10448 1.37116 0.83569 0.75834 0.74822 0.76264 1.20809 1.21427 1.21394 1.22448 0.86929 0.91155 1.00208 0.85513 0.86242 0.83443 0.89536 0.91199 0.90280 0.89528 0.89692 0.89268 0.91314 0.90652 0.91808 0.92047 0.92588 0.93184 0.91638 0.92792 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -8.41 10.26 101.05 1.04 -7.38 16 2 S 2.62 36.54 5.92 -107.50 -0.64 35.90 16 3 O -0.96 -14.56 17.38 -57.54 -1.00 -15.56 16 4 O -0.95 -16.10 17.53 -57.54 -1.01 -17.11 16 5 N -0.99 -12.89 2.98 -105.64 -0.32 -13.20 16 6 C 0.11 1.16 7.11 -2.53 -0.02 1.14 16 7 C -0.12 -1.04 7.09 -24.45 -0.17 -1.21 16 8 C -0.12 -1.23 6.48 -24.76 -0.16 -1.39 16 9 C 0.13 1.80 2.26 -68.10 -0.15 1.64 16 10 H 0.10 1.24 6.17 -51.93 -0.32 0.92 16 11 C 0.49 8.74 6.49 -10.99 -0.07 8.67 16 12 O -0.54 -11.14 13.09 5.56 0.07 -11.06 16 13 N -0.60 -10.93 2.97 -172.76 -0.51 -11.44 16 14 C 0.10 1.52 6.28 -3.71 -0.02 1.49 16 15 C -0.14 -1.99 6.08 -26.61 -0.16 -2.15 16 16 C -0.11 -2.00 5.15 -26.69 -0.14 -2.14 16 17 C 0.02 0.56 1.88 -91.65 -0.17 0.39 16 18 H 0.03 0.86 6.91 -51.93 -0.36 0.50 16 19 C -0.60 -15.93 8.31 -34.44 -0.29 -16.21 16 20 H 0.05 1.36 7.82 -52.48 -0.41 0.95 16 21 C 0.02 0.62 5.45 -17.82 -0.10 0.53 16 22 N -0.90 -26.68 13.63 55.43 0.76 -25.92 16 23 Si 1.07 24.53 29.91 -169.99 -5.08 19.45 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.11 2.54 5.62 -3.71 -0.02 2.52 16 28 H 0.13 1.42 8.14 -51.92 -0.42 0.99 16 29 H 0.12 1.22 8.14 -51.92 -0.42 0.79 16 30 H 0.15 2.29 5.99 -51.92 -0.31 1.98 16 31 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.87 5.44 -51.93 -0.28 0.58 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 8.07 6.36 -40.82 -0.26 7.81 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 2.22 6.68 -51.93 -0.35 1.87 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -34.27 361.82 -9.68 -43.95 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.97 Total: 3.64 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.44 Total: -14.09 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.07 Total: -50.57 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.94 Total: -43.74 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Atomic # 16 Polarization: 36.54 SS G_CDS: -0.64 Total: 35.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.27 -9.68 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.165 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds