Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 110.54007 * 2 1 4 4 O 1.42101 * 110.54389 * 223.25074 * 2 1 3 5 5 N 1.65598 * 104.44895 * 111.62344 * 2 1 3 6 6 C 1.47431 * 125.64460 * 84.18330 * 5 2 1 7 7 C 1.54911 * 104.82742 * 204.08881 * 6 5 2 8 8 C 1.55155 * 101.58427 * 322.99002 * 7 6 5 9 9 C 1.47022 * 125.65078 * 264.13723 * 5 2 1 10 10 H 1.08996 * 109.88230 * 59.40992 * 9 5 2 11 11 C 1.50698 * 109.87958 * 298.39344 * 9 5 2 12 12 O 1.21277 * 120.00506 * 339.11888 * 11 9 5 13 13 N 1.34784 * 119.99707 * 159.11306 * 11 9 5 14 14 C 1.46928 * 120.63128 * 359.97438 * 13 11 9 15 15 C 1.53190 * 108.77798 * 233.63293 * 14 13 11 16 16 C 1.53046 * 109.30806 * 305.36680 * 15 14 13 17 17 C 1.53032 * 109.54070 * 61.36480 * 16 15 14 18 18 H 1.08998 * 109.52678 * 58.60243 * 17 16 15 19 19 C 1.50700 * 109.49571 * 178.68053 * 17 16 15 20 20 H 1.08002 * 119.99818 * 119.84274 * 19 17 16 21 21 C 1.37873 * 120.00188 * 299.83600 * 19 17 16 22 22 N 1.31510 * 120.00344 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99873 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47071 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 300.00164 * 23 21 19 26 26 H 1.48498 * 109.47484 * 60.00197 * 23 21 19 27 27 C 1.46923 * 120.62908 * 180.02562 * 13 11 9 28 28 H 1.09006 * 109.47199 * 311.00877 * 1 2 3 29 29 H 1.08994 * 109.47596 * 71.01336 * 1 2 3 30 30 H 1.09003 * 109.47349 * 191.01485 * 1 2 3 31 31 H 1.08994 * 110.36696 * 322.92588 * 6 5 2 32 32 H 1.08999 * 110.36849 * 85.24996 * 6 5 2 33 33 H 1.08998 * 111.00647 * 81.06715 * 7 6 5 34 34 H 1.09005 * 111.00144 * 204.91583 * 7 6 5 35 35 H 1.09007 * 110.71807 * 277.13749 * 8 7 6 36 36 H 1.08998 * 110.71932 * 153.86945 * 8 7 6 37 37 H 1.09001 * 109.58267 * 353.42141 * 14 13 11 38 38 H 1.09000 * 109.58449 * 113.69830 * 14 13 11 39 39 H 1.09004 * 109.49514 * 65.31118 * 15 14 13 40 40 H 1.08993 * 109.50230 * 185.41192 * 15 14 13 41 41 H 1.08999 * 109.45680 * 301.33715 * 16 15 14 42 42 H 1.09007 * 109.45757 * 181.38406 * 16 15 14 43 43 H 0.96996 * 120.00744 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.59078 * 6.57836 * 27 13 11 45 45 H 1.09007 * 109.70186 * 246.22324 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.3240 -2.0167 1.8531 7 6 2.1166 -2.0507 3.3879 8 6 2.8511 -0.7576 3.8302 9 6 2.5592 0.2193 2.6718 10 1 1.7172 0.8619 2.9291 11 6 3.7780 1.0597 2.3906 12 8 4.5392 0.7453 1.5003 13 7 4.0222 2.1608 3.1285 14 6 3.1091 2.5549 4.2099 15 6 2.6833 4.0100 3.9901 16 6 3.9300 4.8892 3.8684 17 6 4.7571 4.4404 2.6616 18 1 4.1508 4.5093 1.7584 19 6 5.9676 5.3273 2.5236 20 1 6.9584 4.9007 2.5763 21 6 5.8103 6.6832 2.3298 22 7 4.6039 7.2028 2.2659 23 14 7.3109 7.7824 2.1580 24 1 6.8748 9.1881 1.9602 25 1 8.1363 7.6893 3.3890 26 1 8.1146 7.3439 0.9888 27 6 5.2060 2.9905 2.8659 28 1 -0.3634 0.6744 0.7755 29 1 -0.3634 0.3343 -0.9717 30 1 -0.3634 -1.0087 0.1964 31 1 1.5435 -2.5893 1.3521 32 1 3.3079 -2.4079 1.5945 33 1 1.0572 -2.0039 3.6402 34 1 2.5822 -2.9337 3.8256 35 1 3.9225 -0.9356 3.9240 36 1 2.4385 -0.3806 4.7660 37 1 2.2296 1.9111 4.1983 38 1 3.6175 2.4617 5.1696 39 1 2.0960 4.0828 3.0747 40 1 2.0829 4.3451 4.8358 41 1 4.5294 4.7967 4.7741 42 1 3.6298 5.9288 3.7365 43 1 4.4932 8.1567 2.1292 44 1 5.7101 2.6341 1.9677 45 1 5.8886 2.9357 3.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597915916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -95.051548 kcal Electronic energy + Delta-G solvation = -28355.567279 eV Core-core repulsion = 24500.484620 eV Total energy + Delta-G solvation = -3855.082659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.14493 -37.96472 -37.03796 -36.38442 -35.79756 -33.46330 -31.41531 -31.08257 -30.54707 -29.62838 -29.17997 -25.07736 -24.76899 -22.90027 -21.70119 -21.63983 -20.23766 -18.90577 -18.22610 -17.67965 -17.38333 -16.28150 -16.07635 -15.94863 -15.17185 -14.95082 -14.75591 -14.41541 -13.99213 -13.61662 -13.51213 -13.35946 -13.25796 -13.12193 -13.01647 -12.69506 -12.59173 -12.12328 -11.97266 -11.94509 -11.89479 -11.72845 -11.52554 -11.47104 -11.10510 -11.02930 -10.90466 -10.77973 -10.70196 -10.25584 -9.90466 -9.75840 -9.67036 -9.36096 -8.88326 -8.66919 -8.31201 -7.80419 -5.94854 -4.01459 0.16310 2.53852 3.08060 3.36094 3.40075 3.43142 3.55961 3.93501 3.98602 4.28594 4.39075 4.48420 4.59112 4.65681 4.80060 4.83509 4.95639 5.20897 5.31810 5.35526 5.39828 5.42607 5.51400 5.57954 5.65150 5.67184 5.79989 5.84298 5.94433 6.10821 6.21485 6.38513 6.47441 6.55152 6.73432 6.89587 7.06034 7.23786 7.40148 7.76213 8.01727 8.10248 8.14849 8.45247 8.73738 9.02075 9.62719 11.10798 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.003788 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.991185 B = 7389.660566 C = 7928.244470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.679 4.679 2 S 2.619 3.381 3 O -0.923 6.923 4 O -0.950 6.950 5 N -0.993 5.993 6 C 0.122 3.878 7 C -0.128 4.128 8 C -0.115 4.115 9 C 0.133 3.867 10 H 0.096 0.904 11 C 0.502 3.498 12 O -0.533 6.533 13 N -0.599 5.599 14 C 0.108 3.892 15 C -0.137 4.137 16 C -0.111 4.111 17 C 0.039 3.961 18 H 0.033 0.967 19 C -0.513 4.513 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.120 3.880 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -17.990 5.367 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.828 4.828 2 S 2.712 3.288 3 O -0.914 6.914 4 O -0.940 6.940 5 N -0.830 5.830 6 C -0.003 4.003 7 C -0.167 4.167 8 C -0.155 4.155 9 C 0.023 3.977 10 H 0.113 0.887 11 C 0.287 3.713 12 O -0.410 6.410 13 N -0.331 5.331 14 C -0.015 4.015 15 C -0.175 4.175 16 C -0.149 4.149 17 C 0.020 3.980 18 H 0.051 0.949 19 C -0.551 4.551 20 H 0.074 0.926 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.214 1.214 25 H -0.203 1.203 26 H -0.202 1.202 27 C -0.001 4.001 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.079 -17.677 4.078 21.794 hybrid contribution -0.025 0.721 0.221 0.754 sum -12.104 -16.956 4.298 21.272 Atomic orbital electron populations 1.30668 1.29624 1.11092 1.11403 1.04860 0.77160 0.74539 0.72265 1.93720 1.76491 1.36598 1.84542 1.93590 1.77216 1.62365 1.60880 1.58525 1.83048 1.13899 1.27511 1.21997 1.02333 0.80581 0.95400 1.22801 1.01144 0.97991 0.94804 1.22582 1.02369 0.94211 0.96293 1.21319 0.96779 0.93213 0.86349 0.88683 1.20559 0.87138 0.81423 0.82143 1.90663 1.48750 1.70543 1.31013 1.48204 1.26477 1.24854 1.33612 1.21791 0.92431 0.97283 0.90042 1.22022 1.00385 0.94196 1.00895 1.21613 0.93445 1.01469 0.98366 1.18966 0.95749 0.88395 0.94914 0.94898 1.21045 0.92354 0.92168 1.49563 0.92607 1.24923 0.95760 0.98048 0.95050 1.69863 1.20806 1.12327 1.49819 0.86651 0.83174 0.79449 0.78659 1.21364 1.20323 1.20249 1.21956 0.85066 0.92481 1.00637 0.85377 0.85472 0.85756 0.90711 0.90703 0.90362 0.89613 0.89877 0.89224 0.91470 0.91766 0.92184 0.92534 0.94652 0.88693 0.93005 0.90328 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -5.40 10.99 101.05 1.11 -4.29 16 2 S 2.62 36.32 6.06 -107.50 -0.65 35.67 16 3 O -0.92 -17.81 15.63 -64.12 -1.00 -18.81 16 4 O -0.95 -15.79 17.70 -57.54 -1.02 -16.81 16 5 N -0.99 -12.27 2.97 -105.64 -0.31 -12.58 16 6 C 0.12 1.11 6.96 -2.52 -0.02 1.09 16 7 C -0.13 -0.83 7.08 -24.58 -0.17 -1.00 16 8 C -0.12 -1.03 6.28 -24.90 -0.16 -1.18 16 9 C 0.13 1.70 2.48 -68.11 -0.17 1.53 16 10 H 0.10 1.00 6.45 -51.93 -0.33 0.67 16 11 C 0.50 9.39 5.56 -10.98 -0.06 9.33 16 12 O -0.53 -12.26 14.99 -9.29 -0.14 -12.40 16 13 N -0.60 -11.35 2.97 -172.80 -0.51 -11.86 16 14 C 0.11 1.61 6.26 -3.71 -0.02 1.59 16 15 C -0.14 -2.42 6.08 -26.61 -0.16 -2.58 16 16 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 17 C 0.04 0.99 2.25 -91.68 -0.21 0.79 16 18 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 19 C -0.51 -14.31 8.56 -34.44 -0.29 -14.60 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.12 2.70 5.65 -3.74 -0.02 2.68 16 28 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 36 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 37 H 0.07 0.75 5.31 -51.93 -0.28 0.47 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 2.44 6.05 -51.92 -0.31 2.13 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 1.96 7.00 -51.93 -0.36 1.59 16 45 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -38.02 363.55 -10.11 -48.12 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.15 Total: -0.86 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.40 Total: -7.62 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.20 Total: -49.35 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.16 Total: -48.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 36.32 SS G_CDS: -0.65 Total: 35.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.02 -10.11 -48.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.929 kcal (2) G-P(sol) polarization free energy of solvation -38.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds