Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42106 * 110.54007 * 2 1 4 4 O 1.42101 * 110.54389 * 223.25074 * 2 1 3 5 5 N 1.65598 * 104.44895 * 111.62344 * 2 1 3 6 6 C 1.47431 * 125.64460 * 84.18330 * 5 2 1 7 7 C 1.54911 * 104.82742 * 204.08881 * 6 5 2 8 8 C 1.55155 * 101.58427 * 322.99002 * 7 6 5 9 9 C 1.47022 * 125.65078 * 264.13723 * 5 2 1 10 10 H 1.08996 * 109.88230 * 59.40992 * 9 5 2 11 11 C 1.50698 * 109.87958 * 298.39344 * 9 5 2 12 12 O 1.21277 * 120.00506 * 339.11888 * 11 9 5 13 13 N 1.34784 * 119.99707 * 159.11306 * 11 9 5 14 14 C 1.46928 * 120.63128 * 359.97438 * 13 11 9 15 15 C 1.53190 * 108.77798 * 233.63293 * 14 13 11 16 16 C 1.53046 * 109.30806 * 305.36680 * 15 14 13 17 17 C 1.53032 * 109.54070 * 61.36480 * 16 15 14 18 18 H 1.08998 * 109.52678 * 58.60243 * 17 16 15 19 19 C 1.50700 * 109.49571 * 178.68053 * 17 16 15 20 20 H 1.08002 * 119.99818 * 119.84274 * 19 17 16 21 21 C 1.37873 * 120.00188 * 299.83600 * 19 17 16 22 22 N 1.31510 * 120.00344 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99873 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47071 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 300.00164 * 23 21 19 26 26 H 1.48498 * 109.47484 * 60.00197 * 23 21 19 27 27 C 1.46923 * 120.62908 * 180.02562 * 13 11 9 28 28 H 1.09006 * 109.47199 * 311.00877 * 1 2 3 29 29 H 1.08994 * 109.47596 * 71.01336 * 1 2 3 30 30 H 1.09003 * 109.47349 * 191.01485 * 1 2 3 31 31 H 1.08994 * 110.36696 * 322.92588 * 6 5 2 32 32 H 1.08999 * 110.36849 * 85.24996 * 6 5 2 33 33 H 1.08998 * 111.00647 * 81.06715 * 7 6 5 34 34 H 1.09005 * 111.00144 * 204.91583 * 7 6 5 35 35 H 1.09007 * 110.71807 * 277.13749 * 8 7 6 36 36 H 1.08998 * 110.71932 * 153.86945 * 8 7 6 37 37 H 1.09001 * 109.58267 * 353.42141 * 14 13 11 38 38 H 1.09000 * 109.58449 * 113.69830 * 14 13 11 39 39 H 1.09004 * 109.49514 * 65.31118 * 15 14 13 40 40 H 1.08993 * 109.50230 * 185.41192 * 15 14 13 41 41 H 1.08999 * 109.45680 * 301.33715 * 16 15 14 42 42 H 1.09007 * 109.45757 * 181.38406 * 16 15 14 43 43 H 0.96996 * 120.00744 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.59078 * 6.57836 * 27 13 11 45 45 H 1.09007 * 109.70186 * 246.22324 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.3240 -2.0167 1.8531 7 6 2.1166 -2.0507 3.3879 8 6 2.8511 -0.7576 3.8302 9 6 2.5592 0.2193 2.6718 10 1 1.7172 0.8619 2.9291 11 6 3.7780 1.0597 2.3906 12 8 4.5392 0.7453 1.5003 13 7 4.0222 2.1608 3.1285 14 6 3.1091 2.5549 4.2099 15 6 2.6833 4.0100 3.9901 16 6 3.9300 4.8892 3.8684 17 6 4.7571 4.4404 2.6616 18 1 4.1508 4.5093 1.7584 19 6 5.9676 5.3273 2.5236 20 1 6.9584 4.9007 2.5763 21 6 5.8103 6.6832 2.3298 22 7 4.6039 7.2028 2.2659 23 14 7.3109 7.7824 2.1580 24 1 6.8748 9.1881 1.9602 25 1 8.1363 7.6893 3.3890 26 1 8.1146 7.3439 0.9888 27 6 5.2060 2.9905 2.8659 28 1 -0.3634 0.6744 0.7755 29 1 -0.3634 0.3343 -0.9717 30 1 -0.3634 -1.0087 0.1964 31 1 1.5435 -2.5893 1.3521 32 1 3.3079 -2.4079 1.5945 33 1 1.0572 -2.0039 3.6402 34 1 2.5822 -2.9337 3.8256 35 1 3.9225 -0.9356 3.9240 36 1 2.4385 -0.3806 4.7660 37 1 2.2296 1.9111 4.1983 38 1 3.6175 2.4617 5.1696 39 1 2.0960 4.0828 3.0747 40 1 2.0829 4.3451 4.8358 41 1 4.5294 4.7967 4.7741 42 1 3.6298 5.9288 3.7365 43 1 4.4932 8.1567 2.1292 44 1 5.7101 2.6341 1.9677 45 1 5.8886 2.9357 3.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597915916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -124.847757 kcal Electronic energy + Delta-G solvation = -28356.859340 eV Core-core repulsion = 24500.484620 eV Total energy + Delta-G solvation = -3856.374720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42717 -39.13648 -38.25313 -37.85965 -36.98946 -35.37715 -33.10836 -32.15999 -31.86198 -30.42573 -30.23724 -27.04402 -26.22398 -23.98248 -23.30197 -22.37777 -21.63472 -20.36012 -19.45990 -18.78720 -18.68862 -18.17497 -17.23516 -17.01208 -16.66445 -16.52324 -15.95638 -15.84083 -15.13242 -14.91998 -14.81086 -14.57958 -14.41878 -14.13249 -14.04119 -13.92923 -13.74533 -13.56684 -13.51263 -13.17376 -13.11252 -12.88136 -12.74350 -12.65503 -12.61259 -12.55358 -12.07030 -11.97719 -11.86786 -11.82776 -11.67901 -11.57003 -11.24334 -10.91063 -10.77809 -10.43692 -9.88248 -9.43074 -8.10792 -6.26615 -0.79902 1.38591 1.41534 1.48572 1.56636 1.74307 2.17320 2.43115 3.00825 3.05740 3.14900 3.51519 3.54603 3.83235 3.90842 4.00961 4.15472 4.20797 4.28219 4.29644 4.37848 4.56480 4.61294 4.64167 4.66906 4.82123 4.84656 4.90165 4.94067 4.96497 4.99483 5.10166 5.15516 5.17091 5.31446 5.38889 5.45620 5.50428 5.60411 5.62554 5.95754 6.15994 6.34706 6.63550 6.82817 7.30985 7.41054 8.92869 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.003788 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.991185 B = 7389.660566 C = 7928.244470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.598 3.402 3 O -0.998 6.998 4 O -0.999 6.999 5 N -0.997 5.997 6 C 0.107 3.893 7 C -0.110 4.110 8 C -0.113 4.113 9 C 0.136 3.864 10 H 0.128 0.872 11 C 0.488 3.512 12 O -0.593 6.593 13 N -0.606 5.606 14 C 0.106 3.894 15 C -0.131 4.131 16 C -0.104 4.104 17 C 0.041 3.959 18 H -0.024 1.024 19 C -0.542 4.542 20 H 0.049 0.951 21 C 0.017 3.983 22 N -0.913 5.913 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.264 1.264 26 H -0.280 1.280 27 C 0.132 3.868 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.262 0.738 44 H 0.037 0.963 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 -19.813 8.469 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.699 3.301 3 O -0.989 6.989 4 O -0.990 6.990 5 N -0.835 5.835 6 C -0.017 4.017 7 C -0.148 4.148 8 C -0.153 4.153 9 C 0.026 3.974 10 H 0.146 0.854 11 C 0.276 3.724 12 O -0.474 6.474 13 N -0.337 5.337 14 C -0.015 4.015 15 C -0.169 4.169 16 C -0.142 4.142 17 C 0.022 3.978 18 H -0.006 1.006 19 C -0.580 4.580 20 H 0.068 0.932 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.782 3.218 24 H -0.204 1.204 25 H -0.189 1.189 26 H -0.206 1.206 27 C 0.009 3.991 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.445 -19.519 7.207 25.913 hybrid contribution 0.985 1.269 -0.833 1.810 sum -14.460 -18.250 6.373 24.141 Atomic orbital electron populations 1.30284 1.20743 1.14514 1.13478 1.04981 0.80362 0.72546 0.72257 1.93640 1.79965 1.39735 1.85547 1.93516 1.80110 1.62658 1.62666 1.58362 1.83361 1.15200 1.26529 1.22317 1.02008 0.79002 0.98377 1.22836 1.03108 0.97149 0.91740 1.22720 1.01824 0.94613 0.96107 1.21589 0.94198 0.93775 0.87875 0.85424 1.21931 0.88444 0.81371 0.80663 1.90627 1.51211 1.72082 1.33436 1.48322 1.25934 1.24609 1.34885 1.22141 0.93798 0.96042 0.89560 1.21949 0.97908 0.95336 1.01669 1.21393 0.95442 1.00619 0.96725 1.18854 0.94770 0.90216 0.93994 1.00602 1.21423 0.92978 0.93252 1.50352 0.93227 1.25709 0.98691 0.99303 0.94542 1.70010 1.22586 1.12594 1.49992 0.85641 0.79687 0.77658 0.78817 1.20449 1.18887 1.20571 1.21446 0.87022 0.91390 0.99241 0.82824 0.83898 0.81801 0.87575 0.93771 0.86753 0.87822 0.92154 0.85281 0.86242 0.89002 0.94230 0.88428 0.93972 0.92094 0.92899 0.94394 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.33 10.99 113.37 1.25 -6.09 16 2 S 2.60 72.50 6.06 -56.49 -0.34 72.16 16 3 O -1.00 -41.24 15.63 -121.36 -1.90 -43.13 16 4 O -1.00 -34.85 17.70 -127.65 -2.26 -37.11 16 5 N -1.00 -23.26 2.97 -488.12 -1.45 -24.71 16 6 C 0.11 1.71 6.96 86.85 0.60 2.31 16 7 C -0.11 -0.86 7.08 31.99 0.23 -0.63 16 8 C -0.11 -1.56 6.28 31.78 0.20 -1.36 16 9 C 0.14 3.14 2.48 44.59 0.11 3.26 16 10 H 0.13 2.09 6.45 -2.39 -0.02 2.08 16 11 C 0.49 18.72 5.56 87.66 0.49 19.21 16 12 O -0.59 -29.58 14.99 11.18 0.17 -29.42 16 13 N -0.61 -23.26 2.97 -818.99 -2.43 -25.70 16 14 C 0.11 2.84 6.26 86.36 0.54 3.38 16 15 C -0.13 -4.42 6.08 30.67 0.19 -4.23 16 16 C -0.10 -4.81 4.96 30.62 0.15 -4.65 16 17 C 0.04 2.23 2.25 -11.48 -0.03 2.21 16 18 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 19 C -0.54 -31.98 8.56 25.60 0.22 -31.76 16 20 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 21 C 0.02 0.96 5.30 84.65 0.45 1.41 16 22 N -0.91 -54.53 11.32 21.45 0.24 -54.29 16 23 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.13 6.37 5.65 86.35 0.49 6.86 16 28 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.06 1.13 7.84 -2.38 -0.02 1.11 16 36 H 0.13 0.80 8.06 -2.39 -0.02 0.79 16 37 H 0.12 1.99 5.31 -2.39 -0.01 1.97 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 3.24 6.05 -2.38 -0.01 3.23 16 43 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.04 2.09 7.00 -2.39 -0.02 2.07 16 45 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -97.53 363.55 -0.08 -97.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.98 Total: 7.08 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.88 Total: -10.09 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -3.64 Total: -104.70 kcal Atomic # 8 Polarization: -105.67 SS G_CDS: -3.99 Total: -109.66 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 72.50 SS G_CDS: -0.34 Total: 72.16 kcal Total: -97.53 -0.08 -97.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597915916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.236 kcal (2) G-P(sol) polarization free energy of solvation -97.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds