Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00301 * 2 1 4 4 N 1.46500 * 109.47440 * 123.97087 * 3 2 1 5 5 C 1.46501 * 120.00036 * 95.43066 * 4 3 2 6 6 C 1.50696 * 109.47324 * 276.14338 * 5 4 3 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00196 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99671 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00080 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47095 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47160 * 240.00195 * 10 8 6 13 13 H 1.48505 * 109.47140 * 119.99984 * 10 8 6 14 14 C 1.34771 * 120.00155 * 275.43772 * 4 3 2 15 15 O 1.21284 * 119.99887 * 4.82396 * 14 4 3 16 16 C 1.50703 * 120.00349 * 184.83116 * 14 4 3 17 17 H 1.09003 * 109.49155 * 306.28362 * 16 14 4 18 18 C 1.53046 * 109.49766 * 66.34332 * 16 14 4 19 19 C 1.53034 * 109.53406 * 181.28524 * 18 16 14 20 20 C 1.53188 * 109.34519 * 298.68222 * 19 18 16 21 21 N 1.46928 * 108.77175 * 54.62491 * 20 19 18 22 22 S 1.65594 * 120.63398 * 126.37112 * 21 20 19 23 23 C 1.81399 * 104.45067 * 270.02203 * 22 21 20 24 24 O 1.42100 * 104.27606 * 26.09138 * 22 21 20 25 25 O 1.42100 * 104.27917 * 153.94949 * 22 21 20 26 26 C 1.46933 * 118.73864 * 306.38866 * 21 20 19 27 27 H 1.07997 * 120.00354 * 185.06810 * 1 2 3 28 28 H 1.08010 * 119.99831 * 5.07334 * 1 2 3 29 29 H 1.08004 * 120.00017 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47305 * 3.97155 * 3 2 1 31 31 H 1.09005 * 109.46910 * 243.97215 * 3 2 1 32 32 H 1.09002 * 109.47114 * 156.13813 * 5 4 3 33 33 H 1.09000 * 109.47042 * 36.14206 * 5 4 3 34 34 H 0.96996 * 120.00525 * 359.97438 * 9 8 6 35 35 H 1.08997 * 109.46170 * 301.34340 * 18 16 14 36 36 H 1.09002 * 109.45454 * 61.29962 * 18 16 14 37 37 H 1.09006 * 109.49594 * 178.71869 * 19 18 16 38 38 H 1.09002 * 109.50028 * 58.65853 * 19 18 16 39 39 H 1.09001 * 109.58814 * 294.84043 * 20 19 18 40 40 H 1.08999 * 109.70614 * 174.47388 * 20 19 18 41 41 H 1.09003 * 109.47207 * 59.99216 * 23 22 21 42 42 H 1.08999 * 109.47581 * 179.97438 * 23 22 21 43 43 H 1.09008 * 109.46867 * 299.99874 * 23 22 21 44 44 H 1.09001 * 109.58806 * 293.82627 * 26 21 20 45 45 H 1.08992 * 109.70442 * 173.46689 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9761 1.3421 1.1454 5 6 4.3767 0.9460 0.9792 6 6 4.4915 -0.5525 1.0891 7 1 3.6092 -1.1502 1.2647 8 6 5.7226 -1.1607 0.9644 9 7 6.7968 -0.4329 0.7500 10 14 5.8649 -3.0182 1.1013 11 1 4.5207 -3.6012 1.3425 12 1 6.7648 -3.3638 2.2309 13 1 6.4224 -3.5664 -0.1613 14 6 2.5271 1.7404 2.3522 15 8 1.3496 1.9841 2.5109 16 6 3.4880 1.8830 3.5043 17 1 4.0427 0.9534 3.6324 18 6 4.4650 3.0253 3.2162 19 6 5.4613 3.1500 4.3711 20 6 4.7035 3.4752 5.6621 21 7 3.6641 2.4576 5.8693 22 16 3.5724 1.6236 7.2969 23 6 4.6219 0.1668 7.0384 24 8 4.1589 2.4976 8.2516 25 8 2.2066 1.2434 7.3936 26 6 2.7077 2.1937 4.7854 27 1 -0.5400 -0.9316 0.0826 28 1 -0.5400 0.9317 -0.0827 29 1 1.8499 -0.9353 0.0004 30 1 1.3574 2.1323 0.0712 31 1 2.6357 1.3942 -0.9235 32 1 4.9814 1.4147 1.7557 33 1 4.7311 1.2667 -0.0004 34 1 6.7229 0.5317 0.6793 35 1 5.0039 2.8177 2.2918 36 1 3.9117 3.9586 3.1120 37 1 6.1708 3.9488 4.1548 38 1 5.9984 2.2092 4.4915 39 1 4.2405 4.4582 5.5763 40 1 5.3942 3.4687 6.5052 41 1 5.6404 0.4870 6.8188 42 1 4.6205 -0.4466 7.9394 43 1 4.2357 -0.4153 6.2016 44 1 2.0821 3.0722 4.6282 45 1 2.0813 1.3411 5.0476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599961122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -84.330305 kcal Electronic energy + Delta-G solvation = -28185.448717 eV Core-core repulsion = 24330.830966 eV Total energy + Delta-G solvation = -3854.617751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.95747 -37.75257 -37.18766 -35.97873 -35.62851 -33.78892 -32.67984 -31.95115 -31.08392 -29.49227 -27.16780 -26.01436 -24.62512 -23.52847 -22.90305 -20.85259 -19.53060 -18.82028 -18.60378 -17.76976 -17.14534 -16.60944 -16.33600 -16.01304 -15.39320 -14.90803 -14.69764 -14.58233 -13.94580 -13.82520 -13.72558 -13.56644 -13.32732 -13.19743 -13.16092 -12.82143 -12.61195 -12.49263 -12.15688 -12.11593 -11.92738 -11.73750 -11.53683 -11.37243 -11.18163 -10.98372 -10.93823 -10.83782 -10.74193 -10.49193 -10.30251 -10.24971 -9.34661 -9.29027 -9.02870 -8.78705 -8.56689 -7.81161 -6.60304 -4.36267 0.21706 2.52332 2.66071 3.22196 3.29596 3.30930 3.45052 3.79356 3.86730 4.11047 4.32682 4.52180 4.77140 4.86363 4.93694 4.99616 5.09657 5.15461 5.18098 5.34451 5.41936 5.48220 5.58617 5.65730 5.69921 5.77573 5.86795 5.90592 5.92503 6.07503 6.12807 6.14456 6.26809 6.34371 6.39978 6.51295 6.54939 6.77461 7.06683 7.17657 7.31002 7.76934 8.03507 8.31848 8.57404 8.81092 9.33816 10.75407 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010599 B = 0.004909 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.105282 B = 5702.324771 C = 6768.479022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.151 3.849 4 N -0.586 5.586 5 C 0.213 3.787 6 C -0.615 4.615 7 H 0.058 0.942 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 1.069 2.931 11 H -0.289 1.289 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.523 3.477 15 O -0.564 6.564 16 C -0.121 4.121 17 H 0.109 0.891 18 C -0.114 4.114 19 C -0.134 4.134 20 C 0.121 3.879 21 N -0.997 5.997 22 S 2.610 3.390 23 C -0.675 4.675 24 O -0.961 6.961 25 O -0.955 6.955 26 C 0.144 3.856 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 5.055 6.555 8.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C 0.029 3.971 4 N -0.316 5.316 5 C 0.093 3.907 6 C -0.653 4.653 7 H 0.076 0.924 8 C -0.181 4.181 9 N -0.541 5.541 10 Si 0.897 3.103 11 H -0.214 1.214 12 H -0.212 1.212 13 H -0.211 1.211 14 C 0.311 3.689 15 O -0.444 6.444 16 C -0.143 4.143 17 H 0.127 0.873 18 C -0.152 4.152 19 C -0.173 4.173 20 C -0.004 4.004 21 N -0.835 5.835 22 S 2.703 3.297 23 C -0.825 4.825 24 O -0.951 6.951 25 O -0.945 6.945 26 C 0.019 3.981 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.100 0.900 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.890 4.192 7.343 8.664 hybrid contribution -0.446 0.468 -0.601 0.882 sum -2.336 4.660 6.742 8.522 Atomic orbital electron populations 1.23671 0.95889 1.01109 1.02398 1.23415 0.95848 0.99669 0.98042 1.20327 0.92474 0.95128 0.89220 1.47988 1.12387 1.63367 1.07820 1.19864 0.76566 0.96702 0.97535 1.22395 0.96512 0.91639 1.54763 0.92416 1.25748 0.91891 1.06914 0.93503 1.70781 1.30502 1.07837 1.45005 0.83522 0.75388 0.74184 0.77180 1.21443 1.21229 1.21145 1.20245 0.88317 0.76553 0.83832 1.90628 1.17558 1.52725 1.83505 1.21612 0.97178 1.01987 0.93560 0.87331 1.21650 0.96654 0.97289 0.99565 1.21934 0.97893 1.02922 0.94534 1.21461 0.89238 0.91296 0.98408 1.57714 1.41548 1.51082 1.33129 1.04890 0.75469 0.76138 0.73198 1.30601 1.17563 1.22331 1.11961 1.93583 1.80082 1.62449 1.59002 1.93614 1.31080 1.84487 1.85321 1.21186 0.89252 1.03281 0.84404 0.89100 0.89085 0.86721 0.91120 0.90331 0.93503 0.96015 0.92107 0.89565 0.91739 0.90398 0.90915 0.90910 0.89240 0.85247 0.85663 0.84923 0.89979 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 14.31 29.02 0.42 -2.66 16 2 C -0.15 -2.70 9.76 -36.02 -0.35 -3.05 16 3 C 0.15 2.71 5.79 -5.19 -0.03 2.68 16 4 N -0.59 -11.43 2.46 -176.43 -0.43 -11.87 16 5 C 0.21 4.54 3.93 -5.20 -0.02 4.52 16 6 C -0.61 -14.90 9.37 -34.44 -0.32 -15.23 16 7 H 0.06 1.46 6.94 -52.48 -0.36 1.10 16 8 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 9 N -0.91 -23.96 13.65 55.43 0.76 -23.20 16 10 Si 1.07 23.00 29.90 -169.99 -5.08 17.92 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.52 10.03 6.92 -10.99 -0.08 9.96 16 15 O -0.56 -11.90 15.60 5.55 0.09 -11.81 16 16 C -0.12 -1.94 1.83 -91.65 -0.17 -2.11 16 17 H 0.11 1.86 7.69 -51.93 -0.40 1.46 16 18 C -0.11 -1.58 4.76 -26.69 -0.13 -1.70 16 19 C -0.13 -1.51 6.08 -26.62 -0.16 -1.67 16 20 C 0.12 1.32 6.32 -3.71 -0.02 1.29 16 21 N -1.00 -12.59 3.22 -113.52 -0.37 -12.95 16 22 S 2.61 32.41 6.05 -107.50 -0.65 31.76 16 23 C -0.67 -6.55 10.99 101.05 1.11 -5.44 16 24 O -0.96 -13.79 16.72 -57.54 -0.96 -14.75 16 25 O -0.95 -15.12 16.73 -57.54 -0.96 -16.09 16 26 C 0.14 2.14 5.01 -3.71 -0.02 2.13 16 27 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.09 1.37 7.85 -52.48 -0.41 0.96 16 29 H 0.11 2.23 7.22 -52.48 -0.38 1.85 16 30 H 0.07 1.22 7.32 -51.93 -0.38 0.84 16 31 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 32 H 0.05 0.97 3.86 -51.93 -0.20 0.77 16 33 H 0.02 0.49 7.82 -51.93 -0.41 0.08 16 34 H 0.27 6.93 7.22 -40.82 -0.29 6.63 16 35 H 0.09 1.31 5.36 -51.93 -0.28 1.03 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.86 7.09 -51.93 -0.37 0.49 16 41 H 0.13 1.10 8.14 -51.92 -0.42 0.67 16 42 H 0.12 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 44 H 0.08 1.25 7.86 -51.93 -0.41 0.84 16 45 H 0.09 1.47 7.10 -51.93 -0.37 1.10 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -31.81 372.51 -8.72 -40.53 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.85 Total: 5.61 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 0.13 Total: -10.75 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.04 Total: -48.03 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.84 Total: -42.65 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.08 Total: 17.92 kcal Atomic # 16 Polarization: 32.41 SS G_CDS: -0.65 Total: 31.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.81 -8.72 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599961122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds