Wall clock time and date at job start Tue Mar 31 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00343 * 2 1 4 4 H 1.08993 * 109.60174 * 180.32432 * 3 2 1 5 5 C 1.53344 * 109.60420 * 300.81740 * 3 2 1 6 6 C 1.53055 * 108.43823 * 187.27579 * 5 3 2 7 7 C 1.50183 * 109.89110 * 311.10693 * 6 5 3 8 8 O 1.21280 * 118.24715 * 197.60790 * 7 6 5 9 9 N 1.33355 * 123.50686 * 17.58673 * 7 6 5 10 10 C 1.46497 * 117.94554 * 177.77778 * 9 7 6 11 11 C 1.45752 * 124.10702 * 357.75436 * 9 7 6 12 12 S 1.65606 * 119.99764 * 180.02562 * 2 1 3 13 13 O 1.42102 * 104.27719 * 153.92955 * 12 2 1 14 14 O 1.42099 * 104.27748 * 26.06973 * 12 2 1 15 15 C 1.81397 * 104.44673 * 270.00159 * 12 2 1 16 16 C 1.53003 * 109.47022 * 186.03508 * 15 12 2 17 17 C 1.50703 * 115.54980 * 294.74160 * 16 15 12 18 18 H 1.07995 * 120.00111 * 99.43731 * 17 16 15 19 19 C 1.37882 * 119.99757 * 279.44074 * 17 16 15 20 20 N 1.31513 * 119.99926 * 5.46368 * 19 17 16 21 21 Si 1.86800 * 119.99794 * 185.46034 * 19 17 16 22 22 H 1.48505 * 109.47081 * 180.02562 * 21 19 17 23 23 H 1.48492 * 109.47332 * 300.00073 * 21 19 17 24 24 H 1.48501 * 109.46915 * 60.00212 * 21 19 17 25 25 C 1.52997 * 117.52026 * 80.43770 * 16 15 12 26 26 C 1.53002 * 117.50147 * 149.07023 * 16 15 12 27 27 H 1.09002 * 109.47193 * 270.00134 * 1 2 3 28 28 H 1.09001 * 109.46845 * 29.99853 * 1 2 3 29 29 H 1.08997 * 109.47097 * 149.99716 * 1 2 3 30 30 H 1.09008 * 109.67195 * 307.01607 * 5 3 2 31 31 H 1.08997 * 109.67673 * 67.54683 * 5 3 2 32 32 H 1.09002 * 109.40121 * 190.98175 * 6 5 3 33 33 H 1.08998 * 109.33907 * 71.19319 * 6 5 3 34 34 H 1.08999 * 109.46977 * 269.97607 * 10 9 7 35 35 H 1.09000 * 109.47438 * 29.97791 * 10 9 7 36 36 H 1.09002 * 109.46936 * 149.98170 * 10 9 7 37 37 H 1.09001 * 109.30356 * 258.78426 * 11 9 7 38 38 H 1.08994 * 109.30221 * 139.41172 * 11 9 7 39 39 H 1.08998 * 109.47432 * 66.03755 * 15 12 2 40 40 H 1.08999 * 109.47344 * 306.03106 * 15 12 2 41 41 H 0.97001 * 119.99849 * 174.98586 * 20 19 17 42 42 H 1.08992 * 117.50454 * 214.97435 * 25 16 15 43 43 H 1.09006 * 117.49853 * 359.97438 * 25 16 15 44 44 H 1.08996 * 117.49380 * 359.97074 * 26 16 15 45 45 H 1.08994 * 117.49781 * 144.97725 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2696 1.0719 -0.0058 5 6 1.8140 2.0843 -1.2406 6 6 2.7225 3.3140 -1.3114 7 6 2.7529 4.0043 0.0220 8 8 3.1474 5.1503 0.0662 9 7 2.3690 3.4247 1.1600 10 6 2.4961 4.1948 2.3997 11 6 1.8304 2.0732 1.2476 12 16 2.2930 -1.4342 -0.0006 13 8 3.5395 -1.1190 -0.6057 14 8 1.3969 -2.3559 -0.6062 15 6 2.5192 -1.8270 1.7558 16 6 3.4087 -3.0645 1.8912 17 6 2.8276 -4.3451 1.3494 18 1 3.1208 -4.7003 0.3726 19 6 1.9216 -5.0631 2.1008 20 7 1.4828 -4.5782 3.2418 21 14 1.3174 -6.7248 1.4981 22 1 0.3560 -7.2878 2.4800 23 1 0.6438 -6.5601 0.1851 24 1 2.4717 -7.6472 1.3501 25 6 4.9204 -2.8658 1.7648 26 6 4.2994 -3.1621 3.1314 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.9486 1.4765 -2.1354 31 1 0.7737 2.4007 -1.1645 32 1 2.3424 4.0020 -2.0667 33 1 3.7316 3.0022 -1.5808 34 1 3.4772 4.0159 2.8396 35 1 2.3841 5.2567 2.1808 36 1 1.7215 3.8847 3.1011 37 1 0.7452 2.1229 1.3377 38 1 2.2396 1.5787 2.1285 39 1 1.5492 -2.0252 2.2117 40 1 2.9916 -0.9833 2.2589 41 1 0.7919 -5.0478 3.7347 42 1 5.4947 -3.6611 1.2899 43 1 5.2817 -1.8532 1.5847 44 1 4.2520 -2.3444 3.8506 45 1 4.4648 -4.1524 3.5556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601458084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:21 Heat of formation + Delta-G solvation = -74.237018 kcal Electronic energy + Delta-G solvation = -28044.215042 eV Core-core repulsion = 24190.034969 eV Total energy + Delta-G solvation = -3854.180073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69468 -37.69964 -36.83538 -36.40808 -35.32795 -35.07190 -33.26092 -32.11090 -29.20635 -28.24473 -27.29049 -26.18203 -25.50293 -24.33466 -21.95552 -21.28177 -19.62878 -18.81109 -18.51813 -17.28871 -16.80538 -16.75627 -16.42841 -16.11205 -15.35479 -15.20712 -14.75396 -14.59497 -14.27951 -14.06579 -13.82048 -13.64742 -13.44040 -13.21619 -12.86285 -12.54513 -12.38759 -12.23032 -12.00726 -11.96818 -11.86832 -11.60416 -11.36543 -11.35133 -11.10864 -11.09139 -10.94431 -10.84141 -10.66137 -10.53093 -10.19624 -9.87563 -9.76043 -9.08675 -9.02860 -8.87537 -8.64211 -8.14425 -6.19503 -4.30826 0.89549 2.47595 2.72297 3.21434 3.29135 3.31269 3.37981 4.29024 4.33010 4.35643 4.43984 4.55024 4.61366 4.83134 4.99992 5.05030 5.06849 5.07129 5.14487 5.17054 5.26566 5.36545 5.50885 5.55542 5.56486 5.60311 5.64979 5.74010 5.83829 5.87866 5.93778 6.09893 6.13865 6.19366 6.30485 6.54692 6.63636 6.66111 6.92018 7.17204 7.22575 7.31621 7.74780 7.96590 8.13761 8.74666 9.41184 10.88218 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.003811 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.083356 B = 7346.080775 C = 7711.975428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.006 6.006 3 C 0.135 3.865 4 H 0.111 0.889 5 C -0.131 4.131 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.558 6.558 9 N -0.604 5.604 10 C 0.076 3.924 11 C 0.099 3.901 12 S 2.602 3.398 13 O -0.969 6.969 14 O -0.942 6.942 15 C -0.551 4.551 16 C 0.044 3.956 17 C -0.517 4.517 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.273 1.273 25 C -0.207 4.207 26 C -0.144 4.144 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 13.944 -2.384 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.840 5.840 3 C 0.028 3.972 4 H 0.129 0.871 5 C -0.170 4.170 6 C -0.173 4.173 7 C 0.304 3.696 8 O -0.437 6.437 9 N -0.338 5.338 10 C -0.067 4.067 11 C -0.026 4.026 12 S 2.701 3.299 13 O -0.959 6.959 14 O -0.932 6.932 15 C -0.684 4.684 16 C 0.042 3.958 17 C -0.554 4.554 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.194 1.194 24 H -0.199 1.199 25 C -0.245 4.245 26 C -0.183 4.183 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.112 13.985 -2.994 14.457 hybrid contribution -0.637 -0.782 0.737 1.249 sum -2.749 13.203 -2.257 13.673 Atomic orbital electron populations 1.21569 0.78849 1.04145 1.02014 1.57937 1.15187 1.20536 1.90373 1.21004 0.98046 0.84208 0.93974 0.87109 1.22020 1.00015 0.95803 0.99159 1.21646 1.03250 0.97846 0.94566 1.20251 0.76735 0.86643 0.85949 1.90702 1.47582 1.18215 1.87189 1.47159 1.63472 1.15248 1.07887 1.21730 1.01735 0.97827 0.85376 1.21897 0.99729 0.81368 0.99593 1.05437 0.73589 0.71860 0.79001 1.93491 1.44190 1.83023 1.75200 1.93534 1.64416 1.60640 1.74643 1.29996 1.10939 1.05958 1.21543 1.18279 0.85648 0.91508 1.00413 1.20491 1.26769 1.04866 1.03253 0.91425 1.24943 0.95366 0.97839 0.94056 1.69952 1.27544 1.39551 1.14056 0.86652 0.78852 0.83639 0.79134 1.21079 1.19381 1.19870 1.23165 0.98182 1.00638 1.02474 1.22579 1.04976 1.00796 0.89955 0.92732 0.91161 0.89295 0.89445 0.90573 0.87705 0.87600 0.92396 0.90085 0.91108 0.90608 0.89846 0.84560 0.88594 0.92633 0.89504 0.90685 0.91540 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.53 59.85 0.57 1.46 16 2 N -1.01 -13.53 3.02 -114.46 -0.35 -13.87 16 3 C 0.14 1.56 2.54 -67.79 -0.17 1.38 16 4 H 0.11 1.40 6.86 -51.93 -0.36 1.04 16 5 C -0.13 -1.27 5.11 -26.52 -0.14 -1.40 16 6 C -0.13 -1.29 6.03 -28.11 -0.17 -1.45 16 7 C 0.52 6.29 7.47 -11.87 -0.09 6.21 16 8 O -0.56 -8.65 16.18 5.56 0.09 -8.56 16 9 N -0.60 -6.46 3.21 -182.86 -0.59 -7.04 16 10 C 0.08 0.70 10.24 59.85 0.61 1.31 16 11 C 0.10 0.97 5.76 -4.48 -0.03 0.94 16 12 S 2.60 49.01 5.15 -107.50 -0.55 48.46 16 13 O -0.97 -19.69 16.57 -57.54 -0.95 -20.64 16 14 O -0.94 -21.10 16.24 -57.54 -0.93 -22.04 16 15 C -0.55 -10.84 6.03 37.16 0.22 -10.61 16 16 C 0.04 1.03 1.26 -155.66 -0.20 0.83 16 17 C -0.52 -13.67 8.17 -34.44 -0.28 -13.95 16 18 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 19 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 20 N -0.88 -23.27 13.10 55.43 0.73 -22.55 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.21 -4.37 9.96 -26.73 -0.27 -4.64 16 26 C -0.14 -3.15 9.67 -26.73 -0.26 -3.40 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 29 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 30 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.08 0.63 6.99 -51.93 -0.36 0.27 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.82 7.13 -51.93 -0.37 0.45 16 36 H 0.07 0.50 8.01 -51.93 -0.42 0.08 16 37 H 0.08 0.64 7.36 -51.93 -0.38 0.26 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.14 2.81 8.14 -51.93 -0.42 2.38 16 40 H 0.10 1.56 8.09 -51.92 -0.42 1.14 16 41 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 42 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -33.29 375.10 -9.41 -42.70 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.20 Total: 3.36 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.28 Total: -21.24 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.21 Total: -43.46 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.80 Total: -51.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.55 Total: 48.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.29 -9.41 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601458084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.537 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds