Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99844 * 2 1 4 4 O 1.20826 * 120.00249 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99807 * 179.97438 * 3 2 1 6 6 S 1.81404 * 109.47090 * 180.02562 * 5 3 2 7 7 C 1.81398 * 103.00124 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47407 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47424 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99701 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00326 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00360 * 180.02562 * 11 9 8 13 13 C 1.53071 * 109.44009 * 84.79625 * 12 11 9 14 14 C 1.53201 * 109.29371 * 181.23934 * 13 12 11 15 15 N 1.46928 * 108.89275 * 305.57634 * 14 13 12 16 16 C 1.36934 * 120.63265 * 233.51651 * 15 14 13 17 17 H 1.07997 * 119.99862 * 151.82898 * 16 15 14 18 18 C 1.38806 * 120.00015 * 331.83027 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.08772 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.08448 * 18 16 15 21 21 H 1.48503 * 109.47142 * 60.00161 * 20 18 16 22 22 H 1.48498 * 109.47084 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47267 * 300.00095 * 20 18 16 24 24 C 1.46932 * 118.73342 * 53.53882 * 15 14 13 25 25 C 1.53045 * 109.46092 * 205.00269 * 12 11 9 26 26 H 1.08995 * 109.47319 * 300.00362 * 1 2 3 27 27 H 1.09001 * 109.47306 * 60.00159 * 1 2 3 28 28 H 1.09003 * 109.46858 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46828 * 60.00090 * 5 3 2 30 30 H 1.09002 * 109.47059 * 299.99507 * 5 3 2 31 31 H 1.09003 * 109.46878 * 59.99774 * 7 6 5 32 32 H 1.08999 * 109.46953 * 299.99969 * 7 6 5 33 33 H 1.09003 * 109.46960 * 60.00223 * 8 7 6 34 34 H 1.08999 * 109.46885 * 300.00344 * 8 7 6 35 35 H 0.97005 * 119.99791 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.45866 * 324.97703 * 12 11 9 37 37 H 1.09002 * 109.39343 * 61.36176 * 13 12 11 38 38 H 1.09003 * 109.62467 * 301.25403 * 13 12 11 39 39 H 1.09000 * 109.58250 * 185.72113 * 14 13 12 40 40 H 1.08995 * 109.58477 * 65.43833 * 14 13 12 41 41 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.59017 * 66.18099 * 24 15 14 43 43 H 1.09009 * 109.58200 * 186.46074 * 24 15 14 44 44 H 1.09002 * 109.49555 * 58.67538 * 25 12 11 45 45 H 1.08992 * 109.52043 * 298.59539 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 16 4.0807 3.0144 0.0012 7 6 5.8913 2.9046 0.0026 8 6 6.4877 4.3135 0.0026 9 6 7.9919 4.2223 0.0045 10 8 8.5336 3.1371 0.0052 11 7 8.7353 5.3465 0.0043 12 6 10.1976 5.2579 0.0055 13 6 10.6993 5.0954 -1.4315 14 6 12.2263 4.9719 -1.4236 15 7 12.7931 6.1247 -0.7104 16 6 13.7510 6.9068 -1.2984 17 1 13.8417 7.9474 -1.0241 18 6 14.6055 6.3621 -2.2471 19 7 14.7313 5.0557 -2.3467 20 14 15.5769 7.4832 -3.3825 21 1 16.4551 8.3662 -2.5736 22 1 16.4087 6.6607 -4.2973 23 1 14.6387 8.3137 -4.1795 24 6 12.3128 6.4220 0.6460 25 6 10.7852 6.5328 0.6150 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9563 0.7806 -0.8891 30 1 3.9557 0.7810 0.8909 31 1 6.2236 2.3698 -0.8872 32 1 6.2221 2.3696 0.8928 33 1 6.1555 4.8487 0.8922 34 1 6.1568 4.8481 -0.8877 35 1 8.3020 6.2144 0.0033 36 1 10.5086 4.3962 0.5962 37 1 10.4078 5.9671 -2.0174 38 1 10.2641 4.1983 -1.8720 39 1 12.5970 4.9580 -2.4485 40 1 12.5158 4.0509 -0.9178 41 1 15.3286 4.6751 -3.0093 42 1 12.6073 5.6193 1.3221 43 1 12.7427 7.3636 0.9876 44 1 10.4087 6.6577 1.6303 45 1 10.4949 7.3925 0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609346151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -105.742344 kcal Electronic energy + Delta-G solvation = -25063.710383 eV Core-core repulsion = 21208.164136 eV Total energy + Delta-G solvation = -3855.546247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87449 -39.80366 -37.42231 -37.00587 -34.46744 -33.15374 -32.05362 -31.29817 -30.06864 -29.47959 -27.78337 -25.68432 -24.28863 -22.27217 -22.00413 -21.63315 -20.18965 -19.26435 -18.19204 -17.47470 -17.22106 -17.16503 -16.70213 -16.01931 -15.91543 -15.74091 -14.81152 -14.67039 -14.24843 -14.09168 -13.98719 -13.66903 -13.52533 -13.08710 -13.05966 -12.81488 -12.73041 -12.57612 -12.50370 -12.28011 -11.66374 -11.50371 -11.32900 -11.13978 -11.07872 -10.94988 -10.72657 -10.41962 -10.38196 -10.27196 -10.09095 -9.87287 -9.77300 -9.49004 -8.74439 -8.43423 -8.08200 -6.69457 -5.79388 -3.22730 0.81509 1.65253 2.03516 2.28639 2.71448 3.35755 3.39407 3.44097 3.44896 4.20088 4.40127 4.44976 4.48754 4.60814 4.65233 4.68726 4.70080 4.84080 5.03303 5.22276 5.31324 5.39534 5.41023 5.44563 5.58753 5.61548 5.79908 5.80691 6.05925 6.22182 6.32619 6.41032 6.58427 6.63589 6.75187 6.88600 6.92123 7.16756 7.35821 7.63738 7.68622 7.78486 8.33601 8.44334 9.20097 9.83306 10.40029 11.29177 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.001689 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.388045 B =16576.597036 C =16878.862523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.479 3.521 4 O -0.485 6.485 5 C -0.104 4.104 6 S -0.186 6.186 7 C -0.083 4.083 8 C -0.125 4.125 9 C 0.515 3.485 10 O -0.541 6.541 11 N -0.723 5.723 12 C 0.150 3.850 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.148 3.852 25 C -0.139 4.139 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.396 0.604 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.020 0.980 41 H 0.255 0.745 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.876 -6.933 5.886 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.319 3.681 4 O -0.370 6.370 5 C -0.253 4.253 6 S 0.040 5.960 7 C -0.232 4.232 8 C -0.167 4.167 9 C 0.299 3.701 10 O -0.419 6.419 11 N -0.373 5.373 12 C 0.047 3.953 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.386 4.386 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.021 3.979 25 C -0.179 4.179 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.232 -6.629 5.776 27.667 hybrid contribution 0.852 -0.170 -0.654 1.088 sum -25.380 -6.800 5.121 26.770 Atomic orbital electron populations 1.23340 0.75484 1.04019 1.02889 1.86480 1.23968 1.32628 1.84210 1.22599 0.90493 0.81853 0.73132 1.90735 1.66454 1.35974 1.43877 1.23042 0.92257 1.00918 1.09067 1.87352 1.05210 1.05192 1.98241 1.23240 0.92395 1.00509 1.07069 1.21322 0.92805 0.96874 1.05663 1.20330 0.88762 0.84656 0.76347 1.90725 1.73932 1.27576 1.49630 1.46320 1.08119 1.08255 1.74575 1.21065 0.76821 0.99172 0.98236 1.22566 1.00849 1.00509 0.94725 1.20752 0.86316 0.88794 0.99443 1.44083 1.44108 1.32508 1.10773 1.19133 1.08530 0.91406 1.19514 0.91682 1.25063 0.97353 0.95527 1.01590 1.70023 1.39161 1.09450 1.35918 0.86366 0.79620 0.79903 0.80832 1.20855 1.21630 1.21046 1.20842 0.89953 0.98778 0.88345 1.22330 0.99732 0.96575 0.99221 0.91604 0.91599 0.87742 0.85644 0.85673 0.88763 0.88830 0.88022 0.87930 0.77031 0.90060 0.92684 0.92863 0.89287 0.96163 0.93512 0.96228 0.92314 0.92613 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.70 10.57 -39.24 -0.41 -3.11 16 3 C 0.48 4.28 7.98 36.01 0.29 4.56 16 4 O -0.48 -5.80 15.61 -18.75 -0.29 -6.09 16 5 C -0.10 -0.74 6.54 36.01 0.24 -0.50 16 6 S -0.19 -1.74 20.88 -107.50 -2.24 -3.98 16 7 C -0.08 -0.76 5.23 37.15 0.19 -0.57 16 8 C -0.13 -1.14 5.71 -27.89 -0.16 -1.30 16 9 C 0.52 6.82 7.79 -10.99 -0.09 6.74 16 10 O -0.54 -9.41 15.65 5.55 0.09 -9.32 16 11 N -0.72 -9.38 5.08 -53.75 -0.27 -9.65 16 12 C 0.15 2.52 2.41 -67.87 -0.16 2.36 16 13 C -0.15 -2.85 5.66 -26.59 -0.15 -3.01 16 14 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 15 N -0.59 -14.63 3.00 -172.31 -0.52 -15.14 16 16 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 20 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 25 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 26 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.09 0.91 8.10 -51.92 -0.42 0.49 16 32 H 0.09 0.87 8.10 -51.92 -0.42 0.45 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.94 8.60 -40.82 -0.35 3.59 16 36 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.92 385.01 -8.81 -42.73 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.36 Total: 0.64 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 0.80 Total: 7.20 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.17 Total: -50.38 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.62 Total: -18.52 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.24 Total: -3.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.92 -8.81 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609346151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.014 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds