Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42106 * 110.54199 * 2 1 4 4 O 1.42101 * 110.54569 * 223.24880 * 2 1 3 5 5 N 1.65604 * 104.45036 * 111.61991 * 2 1 3 6 6 C 1.46922 * 120.63255 * 266.36693 * 5 2 1 7 7 C 1.53188 * 108.77766 * 126.36930 * 6 5 2 8 8 C 1.53046 * 109.31391 * 54.63104 * 7 6 5 9 9 C 1.53036 * 109.53771 * 298.63964 * 8 7 6 10 10 C 1.46926 * 120.62870 * 86.34242 * 5 2 1 11 11 H 1.09000 * 109.70446 * 113.77502 * 10 5 2 12 12 C 1.50700 * 109.58755 * 353.42024 * 10 5 2 13 13 O 1.21288 * 119.99950 * 307.40333 * 12 10 5 14 14 N 1.34775 * 120.00031 * 127.39915 * 12 10 5 15 15 C 1.46502 * 119.99818 * 185.09405 * 14 12 10 16 16 C 1.53004 * 109.47116 * 184.60494 * 15 14 12 17 17 C 1.50702 * 115.55933 * 328.67304 * 16 15 14 18 18 H 1.08001 * 120.00153 * 90.39599 * 17 16 15 19 19 C 1.37882 * 119.99781 * 270.39450 * 17 16 15 20 20 N 1.31508 * 120.00259 * 5.52289 * 19 17 16 21 21 Si 1.86805 * 119.99588 * 185.52156 * 19 17 16 22 22 H 1.48494 * 109.46879 * 90.00408 * 21 19 17 23 23 H 1.48502 * 109.46716 * 209.99825 * 21 19 17 24 24 H 1.48491 * 109.47346 * 329.99858 * 21 19 17 25 25 C 1.52993 * 117.49795 * 114.36198 * 16 15 14 26 26 C 1.52998 * 117.49732 * 182.98587 * 16 15 14 27 27 H 1.09001 * 109.47274 * 308.37536 * 1 2 3 28 28 H 1.08995 * 109.47164 * 68.38075 * 1 2 3 29 29 H 1.09002 * 109.46537 * 188.37896 * 1 2 3 30 30 H 1.09001 * 109.58758 * 6.58322 * 6 5 2 31 31 H 1.08999 * 109.70327 * 246.22545 * 6 5 2 32 32 H 1.08999 * 109.49804 * 294.68903 * 7 6 5 33 33 H 1.08994 * 109.50179 * 174.58231 * 7 6 5 34 34 H 1.08995 * 109.46027 * 178.60911 * 8 7 6 35 35 H 1.09002 * 109.44285 * 58.65073 * 8 7 6 36 36 H 1.09000 * 109.49754 * 301.41079 * 9 8 7 37 37 H 1.09005 * 109.49536 * 181.31169 * 9 8 7 38 38 H 0.96994 * 120.00001 * 5.10678 * 14 12 10 39 39 H 1.08999 * 109.47013 * 64.60705 * 15 14 12 40 40 H 1.09001 * 109.47779 * 304.60889 * 15 14 12 41 41 H 0.97001 * 120.00082 * 174.99831 * 20 19 17 42 42 H 1.09000 * 117.49800 * 214.97492 * 25 16 15 43 43 H 1.08996 * 117.50127 * 359.97438 * 25 16 15 44 44 H 1.09004 * 117.50242 * 359.97438 * 26 16 15 45 45 H 1.09005 * 117.49747 * 145.02391 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 2.4917 0.3223 2.6110 7 6 1.6096 -0.0827 3.7961 8 6 1.8444 -1.5599 4.1204 9 6 1.4556 -2.4169 2.9136 10 6 2.3360 -2.0383 1.7185 11 1 3.3725 -2.3001 1.9309 12 6 1.8689 -2.7791 0.4922 13 8 0.7829 -2.5325 0.0116 14 7 2.6579 -3.7157 -0.0707 15 6 2.2541 -4.3562 -1.3248 16 6 3.2591 -5.4525 -1.6843 17 6 4.6783 -5.2038 -1.2424 18 1 5.0110 -5.5494 -0.2748 19 6 5.5519 -4.5350 -2.0734 20 7 5.1201 -4.0194 -3.2035 21 14 7.3491 -4.3615 -1.5941 22 1 8.1169 -5.5158 -2.1263 23 1 7.8931 -3.1014 -2.1610 24 1 7.4657 -4.3294 -0.1141 25 6 2.7599 -6.8986 -1.6765 26 6 3.0505 -6.1968 -3.0046 27 1 -0.3634 0.6380 0.8056 28 1 -0.3633 0.3786 -0.9553 29 1 -0.3632 -1.0168 0.1498 30 1 2.2565 1.3440 2.3129 31 1 3.5412 0.2578 2.8979 32 1 0.5616 0.0709 3.5389 33 1 1.8646 0.5252 4.6641 34 1 1.2363 -1.8443 4.9790 35 1 2.8976 -1.7172 4.3533 36 1 0.4090 -2.2411 2.6647 37 1 1.6011 -3.4702 3.1534 38 1 3.4929 -3.9658 0.3547 39 1 2.2279 -3.6121 -2.1209 40 1 1.2638 -4.7960 -1.2060 41 1 5.7165 -3.4872 -3.7530 42 1 3.4580 -7.6703 -1.3519 43 1 1.7157 -7.0692 -1.4150 44 1 2.1970 -5.9058 -3.6171 45 1 3.9397 -6.5067 -3.5537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706138393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -96.508508 kcal Electronic energy + Delta-G solvation = -28645.946641 eV Core-core repulsion = 24790.800803 eV Total energy + Delta-G solvation = -3855.145838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22102 -39.03059 -38.50226 -37.70885 -36.97904 -34.88213 -33.96585 -33.39195 -32.34597 -30.21515 -28.23999 -27.32348 -25.49169 -24.54096 -22.89609 -21.71111 -21.32835 -21.16414 -19.73915 -18.96977 -18.04420 -17.74816 -17.32353 -17.08897 -16.71585 -16.37243 -15.87011 -15.63777 -15.46043 -15.38825 -14.96093 -14.61935 -14.49935 -14.40365 -14.03948 -13.98167 -13.54650 -13.45743 -13.39023 -13.04195 -12.95754 -12.91034 -12.83375 -12.74416 -12.38661 -12.33406 -12.09237 -11.96965 -11.81249 -11.65611 -11.40346 -11.33975 -10.90271 -10.61209 -10.40494 -10.05675 -9.97202 -9.56883 -8.07244 -6.21888 -0.65980 1.41345 1.42935 1.44288 1.52576 1.84521 2.40743 2.47118 2.96365 3.20537 3.22122 3.47967 3.64808 3.84711 3.99520 4.04291 4.15702 4.20227 4.27838 4.31488 4.34770 4.40543 4.58524 4.71639 4.73755 4.77135 4.81892 4.94574 5.00799 5.04056 5.07953 5.16383 5.20730 5.27589 5.28636 5.32516 5.53291 5.53568 5.61087 5.67135 5.77303 5.87430 6.40174 6.83126 6.90956 7.44993 7.48434 8.99743 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.004674 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.743372 B = 5988.599188 C = 6166.300343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.598 3.402 3 O -0.997 6.997 4 O -0.983 6.983 5 N -0.986 5.986 6 C 0.111 3.889 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.118 4.118 10 C 0.143 3.857 11 H 0.101 0.899 12 C 0.505 3.495 13 O -0.592 6.592 14 N -0.675 5.675 15 C 0.184 3.816 16 C 0.000 4.000 17 C -0.505 4.505 18 H 0.070 0.930 19 C 0.029 3.971 20 N -0.901 5.901 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.254 1.254 25 C -0.179 4.179 26 C -0.159 4.159 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.408 0.592 39 H 0.022 0.978 40 H 0.048 0.952 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 6.700 17.416 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.697 3.303 3 O -0.987 6.987 4 O -0.973 6.973 5 N -0.826 5.826 6 C -0.013 4.013 7 C -0.170 4.170 8 C -0.149 4.149 9 C -0.157 4.157 10 C 0.034 3.966 11 H 0.119 0.881 12 C 0.292 3.708 13 O -0.477 6.477 14 N -0.323 5.323 15 C 0.059 3.941 16 C -0.001 4.001 17 C -0.543 4.543 18 H 0.088 0.912 19 C -0.173 4.173 20 N -0.538 5.538 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.178 1.178 25 C -0.216 4.216 26 C -0.197 4.197 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.741 7.187 16.179 19.744 hybrid contribution 0.947 -0.007 -0.514 1.077 sum -7.794 7.181 15.665 18.913 Atomic orbital electron populations 1.30538 1.23684 1.14187 1.11756 1.04924 0.79662 0.72459 0.73290 1.93506 1.79858 1.39070 1.86313 1.93653 1.79470 1.60946 1.63216 1.57479 1.85134 1.11713 1.28272 1.21759 1.01405 0.92217 0.85903 1.21971 1.00193 0.97189 0.97683 1.21483 1.02806 0.94061 0.96512 1.21885 0.99285 1.01486 0.93062 1.20957 1.02559 0.79555 0.93554 0.88089 1.20819 0.84831 0.80380 0.84775 1.90428 1.23434 1.67533 1.66264 1.45756 1.23679 1.39107 1.23736 1.20465 0.95125 0.93890 0.84623 1.19203 0.94247 0.88461 0.98194 1.20553 0.93456 1.37777 1.02517 0.91234 1.25718 1.01920 0.95070 0.94577 1.70132 1.36821 1.33118 1.13703 0.85780 0.81046 0.76762 0.79411 1.20363 1.22439 1.17771 1.23115 1.00215 0.96907 1.01347 1.22351 1.00018 1.06324 0.91016 0.83364 0.85473 0.82965 0.88747 0.90167 0.90921 0.88083 0.89307 0.90850 0.90760 0.89434 0.75365 0.95922 0.93409 0.93527 0.89732 0.89228 0.91524 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -15.98 10.52 113.37 1.19 -14.79 16 2 S 2.60 85.21 5.38 -56.49 -0.30 84.90 16 3 O -1.00 -35.65 16.60 -127.65 -2.12 -37.77 16 4 O -0.98 -44.04 14.06 -118.73 -1.67 -45.71 16 5 N -0.99 -25.69 3.22 -494.67 -1.59 -27.28 16 6 C 0.11 2.03 6.33 86.36 0.55 2.58 16 7 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 8 C -0.11 -1.38 5.88 30.62 0.18 -1.20 16 9 C -0.12 -2.19 5.35 30.67 0.16 -2.03 16 10 C 0.14 3.82 3.28 44.23 0.14 3.96 16 11 H 0.10 2.52 7.96 -2.39 -0.02 2.50 16 12 C 0.51 18.49 4.08 87.66 0.36 18.84 16 13 O -0.59 -23.19 11.56 19.36 0.22 -22.97 16 14 N -0.67 -27.98 5.38 -463.04 -2.49 -30.47 16 15 C 0.18 8.67 5.86 86.38 0.51 9.17 16 16 C 0.00 -0.02 1.90 -52.93 -0.10 -0.12 16 17 C -0.51 -25.71 7.08 25.60 0.18 -25.53 16 18 H 0.07 3.34 7.81 -2.91 -0.02 3.31 16 19 C 0.03 1.56 5.37 84.66 0.45 2.01 16 20 N -0.90 -52.91 12.69 21.45 0.27 -52.63 16 21 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 25 C -0.18 -7.34 9.88 30.59 0.30 -7.03 16 26 C -0.16 -7.55 9.17 30.59 0.28 -7.27 16 27 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.15 4.26 5.34 -2.39 -0.01 4.24 16 30 H 0.09 1.70 6.99 -2.39 -0.02 1.68 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.44 8.10 -2.39 -0.02 1.43 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.41 16.28 6.89 -92.71 -0.64 15.64 16 39 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 2.11 7.85 -2.39 -0.02 2.10 16 41 H 0.26 14.69 8.32 -92.71 -0.77 13.91 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.09 3.23 8.04 -2.39 -0.02 3.21 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.06 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -73.80 365.52 -0.91 -74.71 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.35 Total: 35.41 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.40 Total: -22.78 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.81 Total: -110.39 kcal Atomic # 8 Polarization: -102.87 SS G_CDS: -3.56 Total: -106.44 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 85.21 SS G_CDS: -0.30 Total: 84.90 kcal Total: -73.80 -0.91 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706138393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.803 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds