Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99472 * 2 1 4 4 C 1.53004 * 109.46778 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47298 * 64.99968 * 4 3 2 6 6 C 1.37090 * 120.00347 * 269.99815 * 5 4 3 7 7 H 1.08001 * 120.00260 * 140.15664 * 6 5 4 8 8 C 1.38946 * 119.99945 * 320.16272 * 6 5 4 9 9 N 1.31412 * 120.00054 * 163.27218 * 8 6 5 10 10 Si 1.86800 * 120.00248 * 343.27431 * 8 6 5 11 11 H 1.48496 * 109.47467 * 95.31542 * 10 8 6 12 12 H 1.48501 * 109.47215 * 215.32107 * 10 8 6 13 13 H 1.48503 * 109.46555 * 335.31793 * 10 8 6 14 14 C 1.34777 * 119.99640 * 89.99890 * 5 4 3 15 15 O 1.21295 * 120.00323 * 4.29556 * 14 5 4 16 16 C 1.50703 * 119.99933 * 184.29073 * 14 5 4 17 17 H 1.09005 * 115.56178 * 81.57787 * 16 14 5 18 18 C 1.53134 * 117.51621 * 295.83062 * 16 14 5 19 19 C 1.52336 * 59.82716 * 252.51003 * 18 16 14 20 20 C 1.50549 * 121.91431 * 111.22987 * 19 18 16 21 21 C 1.37683 * 133.32794 * 323.68704 * 20 19 18 22 22 C 1.38368 * 119.98855 * 179.97438 * 21 20 19 23 23 C 1.38298 * 119.83806 * 0.02562 * 22 21 20 24 24 C 1.37935 * 120.34638 * 359.96936 * 23 22 21 25 25 C 1.39097 * 105.97176 * 143.68800 * 20 19 18 26 26 N 1.39611 * 110.24870 * 0.02562 * 25 20 19 27 27 C 1.34593 * 112.22179 * 0.02562 * 26 25 20 28 28 O 1.21288 * 126.61703 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.47332 * 60.00186 * 1 2 3 30 30 H 1.09007 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47505 * 299.99280 * 1 2 3 32 32 H 1.09001 * 109.46914 * 60.00277 * 3 2 1 33 33 H 1.08996 * 109.47491 * 299.99970 * 3 2 1 34 34 H 1.09002 * 109.47221 * 304.99565 * 4 3 2 35 35 H 1.09002 * 109.46955 * 185.00131 * 4 3 2 36 36 H 0.97000 * 120.00432 * 180.02562 * 9 8 6 37 37 H 1.08999 * 117.51938 * 359.95420 * 18 16 14 38 38 H 1.09001 * 117.51694 * 145.03284 * 18 16 14 39 39 H 1.08005 * 120.00177 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.08106 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.82816 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.90580 * 179.97438 * 24 23 22 43 43 H 0.97009 * 123.88767 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0970 -0.7983 -1.3370 7 1 3.7873 -1.3136 -2.2342 8 6 4.6182 -1.5169 -0.2680 9 7 4.4387 -2.8169 -0.2002 10 14 5.5741 -0.6349 1.0729 11 1 4.6631 -0.3137 2.2007 12 1 6.6711 -1.5110 1.5567 13 1 6.1479 0.6213 0.5269 14 6 4.2614 1.3340 -2.3217 15 8 4.2296 2.5426 -2.2250 16 6 4.6206 0.6926 -3.6373 17 1 3.7783 0.3576 -4.2427 18 6 5.9057 -0.1384 -3.6917 19 6 5.8460 1.2246 -4.3694 20 6 6.6299 2.4033 -3.8569 21 6 6.9646 2.8383 -2.5942 22 6 7.7162 3.9892 -2.4359 23 6 8.1289 4.7001 -3.5481 24 6 7.7957 4.2674 -4.8148 25 6 7.0391 3.1097 -4.9831 26 7 6.5817 2.4791 -6.1416 27 6 5.8731 1.3674 -5.8702 28 8 5.3574 0.6232 -6.6771 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8514 0.5684 0.8410 35 1 3.9784 2.1767 0.0889 36 1 4.8022 -3.3185 0.5462 37 1 6.4916 -0.2204 -2.7762 38 1 5.9085 -1.0203 -4.3323 39 1 6.6405 2.2813 -1.7275 40 1 7.9793 4.3321 -1.4460 41 1 8.7159 5.5982 -3.4243 42 1 8.1214 4.8282 -5.6784 43 1 6.7546 2.8047 -7.0389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822283146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -21.227849 kcal Electronic energy + Delta-G solvation = -29290.399313 eV Core-core repulsion = 25303.073939 eV Total energy + Delta-G solvation = -3987.325375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49544 -39.07758 -38.20735 -37.20784 -35.72204 -35.31625 -34.78869 -31.97037 -30.65150 -29.52830 -28.99106 -26.08687 -25.65899 -24.88834 -23.50446 -22.40825 -21.96785 -21.32858 -19.70885 -18.89840 -17.69881 -17.08965 -16.75427 -16.32970 -15.83471 -15.68429 -15.29269 -15.20786 -14.98472 -14.68696 -14.44694 -14.11573 -13.92281 -13.67311 -13.40861 -13.01594 -12.83353 -12.62987 -12.46964 -12.01079 -11.89743 -11.75540 -11.58289 -11.38209 -10.93550 -10.90759 -10.83437 -10.68454 -10.58335 -10.27425 -10.10326 -9.90032 -9.73332 -9.21360 -9.10176 -8.70539 -8.43190 -7.83766 -7.78356 -6.39159 -4.01861 1.31563 1.55913 2.53983 3.03893 3.07626 3.20322 3.21961 3.54914 3.91449 4.06182 4.15628 4.35860 4.39951 4.54995 4.65864 4.82612 5.02869 5.11603 5.25132 5.38595 5.43713 5.57165 5.61818 5.64270 5.74218 5.77066 5.80816 5.87878 5.93224 6.02022 6.05169 6.18899 6.19937 6.27538 6.31785 6.38238 6.53279 6.58691 6.75350 6.77701 6.93499 7.20767 7.32909 7.77092 8.08856 8.13377 8.29713 8.96043 9.32782 9.61164 10.71648 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.004678 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.821073 B = 5983.814147 C = 6244.135643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.055 3.945 4 C 0.101 3.899 5 N -0.448 5.448 6 C -0.325 4.325 7 H 0.105 0.895 8 C 0.074 3.926 9 N -0.858 5.858 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.503 3.497 15 O -0.585 6.585 16 C -0.086 4.086 17 H 0.130 0.870 18 C -0.080 4.080 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.036 4.036 22 C -0.141 4.141 23 C -0.094 4.094 24 C -0.147 4.147 25 C 0.136 3.864 26 N -0.659 5.659 27 C 0.566 3.434 28 O -0.505 6.505 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 10.419 -3.097 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.168 5.168 6 C -0.452 4.452 7 H 0.123 0.877 8 C -0.133 4.133 9 N -0.494 5.494 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.292 3.708 15 O -0.469 6.469 16 C -0.107 4.107 17 H 0.147 0.853 18 C -0.118 4.118 19 C -0.152 4.152 20 C -0.078 4.078 21 C -0.055 4.055 22 C -0.160 4.160 23 C -0.112 4.112 24 C -0.168 4.168 25 C 0.039 3.961 26 N -0.302 5.302 27 C 0.354 3.646 28 O -0.379 6.379 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.782 10.129 -3.329 11.314 hybrid contribution 0.112 0.706 0.358 0.800 sum 3.894 10.836 -2.971 11.892 Atomic orbital electron populations 1.22661 0.82989 1.02151 0.98711 1.88229 1.17700 1.26451 1.95000 1.22863 0.94870 0.85333 0.99252 1.21748 0.92292 0.99000 0.89175 1.43596 1.57170 1.07235 1.08818 1.18961 1.42346 0.78776 1.05109 0.87742 1.25220 0.95810 0.95026 0.97227 1.69707 1.41692 1.06746 1.31246 0.87030 0.80152 0.80257 0.82516 1.20249 1.21657 1.18769 1.19261 0.80268 0.86130 0.85161 1.90590 1.57315 1.13995 1.85022 1.21729 0.92283 1.00722 0.96005 0.85264 1.22865 0.98548 0.89446 1.00892 1.20352 1.05065 0.97978 0.91826 1.18859 1.00230 0.95851 0.92889 1.20309 0.94092 0.95452 0.95647 1.20987 1.00390 0.95914 0.98731 1.20744 0.99543 0.99377 0.91555 1.20181 1.02627 0.95871 0.98088 1.18137 0.97618 0.94724 0.85592 1.43518 1.52438 1.26035 1.08184 1.19445 0.76289 0.79285 0.89543 1.90765 1.46196 1.45966 1.55001 0.94905 0.90033 0.95213 0.93910 0.93412 0.90908 0.89578 0.91678 0.86478 0.87007 0.85668 0.85800 0.85730 0.86184 0.75225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.40 10.18 -35.23 -0.36 -7.76 16 3 C 0.05 1.04 6.28 37.16 0.23 1.28 16 4 C 0.10 2.11 4.60 -4.04 -0.02 2.10 16 5 N -0.45 -10.09 2.14 -114.81 -0.25 -10.33 16 6 C -0.32 -7.95 7.74 -14.94 -0.12 -8.07 16 7 H 0.11 2.75 7.49 -52.49 -0.39 2.35 16 8 C 0.07 1.88 5.38 -17.47 -0.09 1.78 16 9 N -0.86 -23.07 13.96 55.50 0.77 -22.29 16 10 Si 0.87 19.57 24.77 -169.99 -4.21 15.36 16 11 H -0.28 -6.10 6.76 56.52 0.38 -5.72 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.26 -5.73 7.07 56.52 0.40 -5.33 16 14 C 0.50 10.93 6.00 -10.98 -0.07 10.87 16 15 O -0.58 -13.36 14.19 5.54 0.08 -13.28 16 16 C -0.09 -1.70 4.88 -92.04 -0.45 -2.15 16 17 H 0.13 2.52 8.14 -51.93 -0.42 2.09 16 18 C -0.08 -1.45 8.87 -27.00 -0.24 -1.69 16 19 C -0.15 -2.68 2.41 -157.52 -0.38 -3.06 16 20 C -0.08 -1.31 5.34 -104.58 -0.56 -1.87 16 21 C -0.04 -0.62 8.24 -39.74 -0.33 -0.95 16 22 C -0.14 -1.97 10.06 -39.51 -0.40 -2.37 16 23 C -0.09 -1.12 10.02 -39.67 -0.40 -1.52 16 24 C -0.15 -1.81 10.07 -39.29 -0.40 -2.21 16 25 C 0.14 2.03 7.12 -83.59 -0.59 1.44 16 26 N -0.66 -9.43 5.90 -9.79 -0.06 -9.48 16 27 C 0.57 9.86 8.47 -11.03 -0.09 9.77 16 28 O -0.50 -9.84 18.03 5.55 0.10 -9.74 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.60 3.14 -51.93 -0.16 1.43 16 35 H 0.09 1.70 7.37 -51.93 -0.38 1.32 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.12 2.18 8.10 -51.93 -0.42 1.76 16 38 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 39 H 0.13 2.36 7.04 -52.48 -0.37 1.99 16 40 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.41 4.52 8.96 -40.82 -0.37 4.16 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -30.43 358.17 -6.78 -37.21 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.48 Total: 9.98 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.78 Total: 4.95 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.47 Total: -42.11 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.18 Total: -30.79 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.21 Total: 15.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.43 -6.78 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822283146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.981 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds