Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53042 * 109.46225 * 349.88418 * 3 2 1 5 5 C 1.53190 * 109.31216 * 178.62973 * 4 3 2 6 6 N 1.46921 * 108.77654 * 54.63578 * 5 4 3 7 7 S 1.65606 * 120.63289 * 126.36965 * 6 5 4 8 8 O 1.42105 * 106.40008 * 336.45758 * 7 6 5 9 9 O 1.42098 * 106.40370 * 203.53944 * 7 6 5 10 10 N 1.65595 * 107.22013 * 89.99671 * 7 6 5 11 11 C 1.46498 * 119.99850 * 89.99911 * 10 7 6 12 12 C 1.50709 * 109.47113 * 95.00266 * 11 10 7 13 13 H 1.08002 * 119.99589 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00118 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99969 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46998 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47811 * 119.99362 * 16 14 12 19 19 H 1.48498 * 109.47123 * 239.99516 * 16 14 12 20 20 C 1.46498 * 120.00275 * 270.00200 * 10 7 6 21 21 C 1.53011 * 109.46819 * 94.99881 * 20 10 7 22 22 O 1.42896 * 109.47166 * 65.00495 * 21 20 10 23 23 C 1.42898 * 113.99963 * 180.02562 * 22 21 20 24 24 C 1.46923 * 118.74101 * 306.64369 * 6 5 4 25 25 C 1.52760 * 109.00861 * 53.30804 * 24 6 5 26 26 H 4.44653 * 5.63496 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.45856 * 109.85698 * 3 2 1 28 28 H 1.08998 * 109.49686 * 58.67522 * 4 3 2 29 29 H 1.09001 * 109.49965 * 298.58168 * 4 3 2 30 30 H 1.08997 * 109.58822 * 294.84662 * 5 4 3 31 31 H 1.08998 * 109.70344 * 174.49077 * 5 4 3 32 32 H 1.08996 * 109.47764 * 215.00207 * 11 10 7 33 33 H 1.09003 * 109.47361 * 335.00581 * 11 10 7 34 34 H 0.96993 * 120.00108 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47378 * 214.99601 * 20 10 7 36 36 H 1.09002 * 109.46925 * 335.00342 * 20 10 7 37 37 H 1.09001 * 109.46449 * 185.00481 * 21 20 10 38 38 H 1.08994 * 109.46995 * 304.99701 * 21 20 10 39 39 H 1.08995 * 109.47356 * 59.99483 * 23 22 21 40 40 H 1.09002 * 109.47244 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.46602 * 299.99291 * 23 22 21 42 42 H 1.09001 * 109.59343 * 173.14863 * 24 6 5 43 43 H 1.09010 * 109.58634 * 293.56962 * 24 6 5 44 44 H 1.09006 * 109.56563 * 185.55777 * 25 24 6 45 45 H 1.09001 * 109.35973 * 65.50306 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4197 0.2534 5 6 4.6881 -1.4212 0.2187 6 7 5.1838 -0.4222 1.1752 7 16 6.2817 -0.8427 2.3415 8 8 6.1407 -2.2428 2.5393 9 8 6.1396 0.1082 3.3878 10 7 7.7909 -0.6107 1.7006 11 6 8.4579 0.6853 1.8478 12 6 9.3671 0.6488 3.0492 13 1 9.4403 -0.2498 3.6438 14 6 10.1045 1.7629 3.3898 15 7 10.0150 2.8573 2.6660 16 14 11.2319 1.7173 4.8784 17 1 11.1534 0.3794 5.5181 18 1 12.6292 1.9801 4.4496 19 1 10.8092 2.7564 5.8515 20 6 8.4590 -1.7014 0.9863 21 6 8.1992 -1.5622 -0.5151 22 8 8.8124 -0.3643 -0.9956 23 6 8.6282 -0.1378 -2.3945 24 6 4.6824 0.9556 1.0811 25 6 3.1552 0.9319 1.1027 26 1 -1.0497 -0.0004 0.0003 27 1 3.0090 0.3499 -0.9666 28 1 2.7744 -2.0869 -0.5191 29 1 2.8145 -1.7603 1.2307 30 1 5.0311 -1.1684 -0.7845 31 1 5.0609 -2.4076 0.4946 32 1 9.0453 0.8953 0.9540 33 1 7.7093 1.4661 1.9823 34 1 10.5340 3.6408 2.9054 35 1 9.5316 -1.6561 1.1752 36 1 8.0685 -2.6573 1.3356 37 1 8.6205 -2.4210 -1.0378 38 1 7.1252 -1.5183 -0.6955 39 1 7.5630 -0.0641 -2.6134 40 1 9.1227 0.7906 -2.6805 41 1 9.0582 -0.9669 -2.9564 42 1 5.0495 1.5367 1.9271 43 1 5.0250 1.4064 0.1496 44 1 2.7720 1.9384 0.9344 45 1 2.8131 0.5692 2.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828109969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -91.774673 kcal Electronic energy + Delta-G solvation = -28215.655498 eV Core-core repulsion = 24360.714935 eV Total energy + Delta-G solvation = -3854.940563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.75465 -39.01481 -38.33835 -36.94259 -36.80723 -35.19621 -34.54499 -32.15226 -31.89688 -31.00078 -28.44175 -26.92865 -25.93410 -24.59950 -24.36489 -23.23648 -21.84344 -19.87079 -19.32031 -18.70733 -18.42441 -18.21270 -17.43064 -17.02089 -16.71435 -16.43923 -15.84959 -15.70704 -15.65270 -15.45820 -15.06283 -14.92380 -14.89592 -14.44945 -13.87678 -13.67255 -13.54130 -13.37971 -13.25827 -13.19968 -12.97460 -12.92783 -12.70832 -12.54505 -12.51685 -12.28779 -12.18994 -12.15579 -12.03634 -11.83984 -11.79552 -11.63773 -10.94363 -10.93236 -10.55936 -10.40997 -10.04233 -9.69874 -8.14556 -6.25207 -0.35853 1.38693 1.40850 1.52370 1.91585 1.94379 2.03238 2.41989 2.56991 3.04890 3.16721 3.35680 3.39403 3.70916 3.94580 3.98875 4.12424 4.15004 4.21801 4.29545 4.35356 4.47134 4.50159 4.60850 4.62959 4.67386 4.76782 4.77259 4.80009 4.90204 4.93217 4.96732 5.08746 5.10625 5.21967 5.24802 5.35354 5.40016 5.54016 5.72710 5.77277 6.02921 6.19619 6.48707 6.74859 6.83739 7.42179 8.92958 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.004404 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.727680 B = 6356.552464 C = 7127.844904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.209 4.209 3 C 0.025 3.975 4 C -0.117 4.117 5 C 0.112 3.888 6 N -1.004 6.004 7 S 2.786 3.214 8 O -1.006 7.006 9 O -1.010 7.010 10 N -0.990 5.990 11 C 0.283 3.717 12 C -0.547 4.547 13 H 0.048 0.952 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.953 3.047 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.280 1.280 20 C 0.112 3.888 21 C 0.045 3.955 22 O -0.407 6.407 23 C 0.027 3.973 24 C 0.119 3.881 25 C -0.117 4.117 26 H 0.243 0.757 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.007 0.993 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 -8.251 -13.487 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.209 4.209 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.012 4.012 6 N -0.845 5.845 7 S 2.797 3.203 8 O -0.989 6.989 9 O -0.994 6.994 10 N -0.830 5.830 11 C 0.159 3.841 12 C -0.586 4.586 13 H 0.066 0.934 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.778 3.222 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.205 1.205 20 C -0.014 4.014 21 C -0.033 4.033 22 O -0.326 6.326 23 C -0.069 4.069 24 C -0.007 4.007 25 C -0.156 4.156 26 H 0.259 0.741 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.753 -8.275 -12.494 20.340 hybrid contribution 0.545 0.418 0.593 0.908 sum -13.208 -7.857 -11.901 19.438 Atomic orbital electron populations 1.25648 0.96762 0.99646 1.00132 1.23386 0.94857 1.01443 1.01217 1.18263 0.84295 0.96294 1.00435 1.21872 0.94480 0.96063 1.03192 1.21716 0.94608 0.91375 0.93493 1.58090 1.58208 1.17722 1.50501 1.01535 0.72925 0.72112 0.73753 1.93476 1.86923 1.32842 1.85704 1.93547 1.86474 1.64445 1.54885 1.57574 1.32903 1.21152 1.71381 1.18528 0.91496 0.77962 0.96106 1.21912 1.25443 0.98521 1.12747 0.93401 1.25690 0.98473 0.94997 0.99518 1.70024 1.42475 1.03219 1.40486 0.85595 0.78897 0.78155 0.79572 1.19545 1.19589 1.20545 1.21517 1.00042 0.89387 0.90419 1.23186 0.97757 0.88061 0.94299 1.88085 1.76637 1.43094 1.24816 1.22852 1.01074 1.01797 0.81184 1.21405 0.94631 0.81208 1.03416 1.21786 0.94097 1.00965 0.98756 0.74056 0.87065 0.87949 0.92538 0.88650 0.88834 0.94176 0.97511 0.92587 0.90530 0.87428 0.89865 0.92079 0.93039 0.90287 0.92679 0.91183 0.89281 0.88934 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.44 19.25 74.32 1.43 -2.01 16 2 C -0.21 -4.13 12.56 31.13 0.39 -3.73 16 3 C 0.03 0.47 2.53 -12.57 -0.03 0.44 16 4 C -0.12 -2.17 5.32 30.67 0.16 -2.01 16 5 C 0.11 2.36 5.52 86.36 0.48 2.83 16 6 N -1.00 -29.58 3.35 -513.86 -1.72 -31.31 16 7 S 2.79 112.44 6.10 -56.49 -0.34 112.09 16 8 O -1.01 -40.59 15.28 -128.00 -1.96 -42.54 16 9 O -1.01 -50.52 15.69 -128.00 -2.01 -52.52 16 10 N -0.99 -41.67 2.81 -519.82 -1.46 -43.14 16 11 C 0.28 14.75 4.94 85.64 0.42 15.18 16 12 C -0.55 -31.95 9.38 25.60 0.24 -31.71 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.92 -55.37 13.29 21.45 0.28 -55.09 16 16 Si 0.95 45.93 29.54 68.60 2.03 47.95 16 17 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 C 0.11 3.83 6.13 86.38 0.53 4.36 16 21 C 0.05 1.19 6.28 71.99 0.45 1.65 16 22 O -0.41 -13.18 9.02 -148.98 -1.34 -14.52 16 23 C 0.03 0.61 11.01 113.37 1.25 1.86 16 24 C 0.12 3.27 6.45 86.22 0.56 3.83 16 25 C -0.12 -2.65 5.30 30.53 0.16 -2.49 16 26 H 0.24 2.22 7.80 -4.43 -0.03 2.18 16 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.48 7.45 -2.39 -0.02 1.46 16 31 H 0.09 1.98 6.92 -2.39 -0.02 1.97 16 32 H 0.04 2.19 6.60 -2.39 -0.02 2.18 16 33 H 0.01 0.39 7.61 -2.39 -0.02 0.37 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 36 H 0.11 3.24 6.91 -2.39 -0.02 3.23 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.37 6.37 -2.39 -0.02 1.35 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 2.38 6.91 -2.39 -0.02 2.36 16 43 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -77.24 378.74 0.94 -76.30 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.96 Total: 13.39 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 6.50 Total: -10.62 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -2.90 Total: -129.53 kcal Atomic # 8 Polarization: -104.28 SS G_CDS: -5.31 Total: -109.59 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 112.44 SS G_CDS: -0.34 Total: 112.09 kcal Total: -77.24 0.94 -76.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828109969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.472 kcal (2) G-P(sol) polarization free energy of solvation -77.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds