Wall clock time and date at job start Tue Mar 31 2020 05:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47313 * 291.31762 * 3 2 1 5 5 N 1.46508 * 109.53990 * 292.79910 * 4 3 2 6 6 S 1.65595 * 120.00136 * 59.60968 * 5 4 3 7 7 O 1.42105 * 106.40252 * 63.27933 * 6 5 4 8 8 O 1.42104 * 106.40293 * 290.35857 * 6 5 4 9 9 N 1.65601 * 107.21944 * 176.81715 * 6 5 4 10 10 C 1.46496 * 120.00144 * 243.47622 * 9 6 5 11 11 C 1.53005 * 109.47017 * 115.45341 * 10 9 6 12 12 C 1.46501 * 119.99699 * 63.47698 * 9 6 5 13 13 C 1.50702 * 109.47149 * 95.00007 * 12 9 6 14 14 H 1.08003 * 120.00149 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00462 * 179.97438 * 13 12 9 16 16 N 1.31524 * 119.99640 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00548 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46952 * 60.00154 * 17 15 13 19 19 H 1.48493 * 109.47085 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47079 * 300.00406 * 17 15 13 21 21 C 1.53178 * 109.54756 * 52.97248 * 4 3 2 22 22 C 1.53279 * 109.06618 * 176.85791 * 21 4 3 23 23 O 1.42907 * 109.45998 * 302.44723 * 22 21 4 24 24 C 1.42896 * 114.09919 * 61.15582 * 23 22 21 25 25 C 1.53090 * 109.41614 * 298.84555 * 24 23 22 26 26 H 4.44645 * 5.63319 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.47135 * 171.31538 * 3 2 1 28 28 H 1.09003 * 109.47100 * 51.31521 * 3 2 1 29 29 H 0.97005 * 119.99818 * 239.61309 * 5 4 3 30 30 H 1.09003 * 109.47285 * 235.45435 * 10 9 6 31 31 H 1.08998 * 109.47193 * 355.45920 * 10 9 6 32 32 H 1.08995 * 109.47660 * 290.89985 * 11 10 9 33 33 H 1.09004 * 109.46569 * 50.89918 * 11 10 9 34 34 H 1.08999 * 109.46981 * 170.89429 * 11 10 9 35 35 H 1.08994 * 109.47394 * 214.99870 * 12 9 6 36 36 H 1.08996 * 109.47425 * 335.00355 * 12 9 6 37 37 H 0.96998 * 120.00120 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.51975 * 296.84769 * 21 4 3 39 39 H 1.09003 * 109.51991 * 57.03265 * 21 4 3 40 40 H 1.08999 * 109.45924 * 182.44798 * 22 21 4 41 41 H 1.08995 * 109.46715 * 62.44765 * 22 21 4 42 42 H 1.08998 * 109.48565 * 178.86088 * 24 23 22 43 43 H 1.09000 * 109.48914 * 58.82960 * 24 23 22 44 44 H 1.08996 * 109.52405 * 297.70083 * 25 24 23 45 45 H 1.09005 * 109.57454 * 177.54402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.5235 1.3438 5 7 2.8147 0.4293 2.4030 6 16 1.2301 0.8137 2.6916 7 8 0.5957 -0.3869 3.1104 8 8 0.7921 1.5754 1.5747 9 7 1.2030 1.8358 3.9943 10 6 0.5370 1.4260 5.2331 11 6 1.5722 1.3084 6.3537 12 6 1.8449 3.1498 3.9077 13 6 0.8187 4.1863 3.5287 14 1 -0.2090 3.8955 3.3688 15 6 1.1915 5.5061 3.3872 16 7 2.4429 5.8605 3.5825 17 14 -0.0804 6.7908 2.9168 18 1 -1.1500 6.8286 3.9463 19 1 0.5703 8.1227 2.8292 20 1 -0.6726 6.4422 1.6003 21 6 2.5081 -1.8784 1.6449 22 6 3.0853 -2.4297 2.9535 23 8 4.5057 -2.5379 2.8391 24 6 5.1685 -1.2940 2.6034 25 6 4.6768 -0.6977 1.2820 26 1 -1.0499 0.0001 0.0002 27 1 3.0088 1.0167 -0.1552 28 1 3.0096 -0.6415 -0.8022 29 1 3.5169 0.8350 2.9353 30 1 -0.2114 2.1698 5.5065 31 1 0.0527 0.4612 5.0832 32 1 2.2248 0.4577 6.1577 33 1 2.1672 2.2207 6.3958 34 1 1.0619 1.1631 7.3058 35 1 2.2803 3.4059 4.8736 36 1 2.6294 3.1219 3.1515 37 1 2.7054 6.7890 3.4826 38 1 1.4300 -1.7523 1.7444 39 1 2.7211 -2.5727 0.8321 40 1 2.6606 -3.4138 3.1516 41 1 2.8370 -1.7550 3.7727 42 1 6.2444 -1.4599 2.5493 43 1 4.9476 -0.6042 3.4180 44 1 4.9335 -1.3682 0.4619 45 1 5.1482 0.2719 1.1210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885840671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:20 Heat of formation + Delta-G solvation = -51.616835 kcal Electronic energy + Delta-G solvation = -29097.234129 eV Core-core repulsion = 25244.034940 eV Total energy + Delta-G solvation = -3853.199189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.01856 -36.73293 -36.32535 -36.07760 -35.05668 -32.70139 -32.66932 -31.16194 -30.64375 -29.86173 -28.22575 -26.76404 -23.78290 -23.44392 -23.23221 -21.54520 -19.99666 -18.63087 -17.98045 -17.51422 -16.57856 -16.19240 -16.09935 -15.93874 -15.55704 -15.42490 -14.68993 -14.54436 -14.38918 -13.98614 -13.60525 -13.32795 -13.22979 -12.85251 -12.82372 -12.71604 -12.27434 -12.08739 -11.93747 -11.64733 -11.54557 -11.37312 -11.28565 -11.03211 -10.98965 -10.87512 -10.67445 -10.59929 -10.38574 -10.30980 -10.06080 -10.03506 -9.77016 -9.71620 -9.06895 -8.97840 -8.47483 -8.11307 -6.10260 -4.13062 1.27574 3.09211 3.32024 3.35201 3.35269 3.40812 3.61981 3.87561 3.93629 4.38228 4.42445 4.68796 4.73032 4.92802 4.97994 5.19228 5.22676 5.25727 5.38723 5.42769 5.51994 5.61313 5.64040 5.69288 5.74195 5.75105 5.82321 5.87150 5.91556 6.01329 6.02943 6.15708 6.28655 6.35641 6.38210 6.56992 6.60863 7.07703 7.16551 7.19270 7.41717 7.55337 7.88824 8.06671 8.16203 8.90248 9.52248 10.98312 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.004982 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.509114 B = 5619.394137 C = 6014.401692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.205 4.205 3 C -0.023 4.023 4 C 0.195 3.805 5 N -1.131 6.131 6 S 2.781 3.219 7 O -1.003 7.003 8 O -0.954 6.954 9 N -0.997 5.997 10 C 0.118 3.882 11 C -0.167 4.167 12 C 0.254 3.746 13 C -0.522 4.522 14 H 0.062 0.938 15 C 0.061 3.939 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.178 4.178 22 C 0.069 3.931 23 O -0.386 6.386 24 C 0.061 3.939 25 C -0.150 4.150 26 H 0.212 0.788 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.409 0.591 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -14.423 -1.729 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.207 4.207 3 C -0.060 4.060 4 C 0.105 3.895 5 N -0.889 5.889 6 S 2.792 3.208 7 O -0.987 6.987 8 O -0.936 6.936 9 N -0.839 5.839 10 C -0.008 4.008 11 C -0.226 4.226 12 C 0.132 3.868 13 C -0.561 4.561 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.217 4.217 22 C -0.007 4.007 23 O -0.305 6.305 24 C -0.016 4.016 25 C -0.189 4.189 26 H 0.229 0.771 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.241 0.759 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.861 -14.807 -2.298 15.474 hybrid contribution -0.362 1.664 0.121 1.707 sum 3.499 -13.143 -2.177 13.774 Atomic orbital electron populations 1.24665 0.95802 1.00415 0.97700 1.22555 0.94288 1.00785 1.03063 1.19263 0.85932 1.03759 0.97093 1.20004 0.95502 0.87976 0.85973 1.56051 1.27882 1.58031 1.46950 1.02139 0.72640 0.73032 0.73038 1.93482 1.74830 1.47534 1.82820 1.93826 1.78130 1.72315 1.49285 1.57574 1.69515 1.29165 1.27687 1.21147 0.95203 1.00405 0.84089 1.22140 1.00033 1.02175 0.98238 1.19050 0.92595 0.77194 0.97968 1.21433 0.95908 0.92097 1.46701 0.92025 1.24925 0.95512 0.98491 0.95149 1.69902 1.16118 1.18051 1.49799 0.86575 0.81433 0.80193 0.79397 1.20184 1.21224 1.19976 1.22944 1.03198 0.96098 0.99493 1.22502 0.80084 1.01660 0.96481 1.87890 1.19624 1.30220 1.92724 1.22536 0.97110 0.86335 0.95593 1.22423 0.93571 1.02972 0.99967 0.77119 0.88108 0.88739 0.75946 0.90868 0.90073 0.93398 0.91413 0.92269 0.94328 0.95323 0.92670 0.88292 0.90066 0.88932 0.92441 0.88690 0.92877 0.89473 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 16.65 29.55 0.49 -2.45 16 2 C -0.21 -3.55 8.16 -37.12 -0.30 -3.85 16 3 C -0.02 -0.32 4.84 -29.52 -0.14 -0.46 16 4 C 0.20 2.60 0.66 -131.63 -0.09 2.51 16 5 N -1.13 -17.54 4.69 0.69 0.00 -17.54 16 6 S 2.78 54.16 4.17 -107.50 -0.45 53.72 16 7 O -1.00 -19.58 13.69 -57.17 -0.78 -20.36 16 8 O -0.95 -21.92 12.64 -57.17 -0.72 -22.64 16 9 N -1.00 -20.36 2.92 -115.67 -0.34 -20.69 16 10 C 0.12 2.10 6.61 -4.04 -0.03 2.07 16 11 C -0.17 -2.51 10.09 37.16 0.37 -2.14 16 12 C 0.25 6.09 5.22 -5.19 -0.03 6.06 16 13 C -0.52 -14.40 9.38 -34.44 -0.32 -14.72 16 14 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 21 C -0.18 -2.40 4.08 -26.49 -0.11 -2.51 16 22 C 0.07 0.90 6.68 37.30 0.25 1.15 16 23 O -0.39 -4.87 10.77 -35.23 -0.38 -5.25 16 24 C 0.06 0.64 6.67 37.20 0.25 0.89 16 25 C -0.15 -1.53 4.96 -26.59 -0.13 -1.66 16 26 H 0.21 3.11 7.80 -54.09 -0.42 2.69 16 27 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.41 5.72 7.65 -34.47 -0.26 5.45 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.37 6.59 -51.93 -0.34 1.02 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.11 6.57 -51.93 -0.34 0.77 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.94 6.54 -51.93 -0.34 0.60 16 36 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.10 1.57 4.90 -51.93 -0.25 1.31 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.81 7.70 -51.93 -0.40 0.41 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.56 7.09 -51.93 -0.37 0.20 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -33.27 362.84 -8.29 -41.56 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.92 Total: 7.36 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.12 Total: -13.50 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.40 Total: -63.10 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.89 Total: -48.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 54.16 SS G_CDS: -0.45 Total: 53.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.27 -8.29 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885840671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.058 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds