Wall clock time and date at job start Tue Mar 31 2020 05:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47179 * 2 1 4 4 C 1.46498 * 119.99822 * 270.00039 * 3 2 1 5 5 C 1.50697 * 109.47141 * 269.99777 * 4 3 2 6 6 H 1.08000 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00186 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47227 * 60.00002 * 9 7 5 11 11 H 1.48494 * 109.47221 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47105 * 300.00103 * 9 7 5 13 13 C 1.34778 * 120.00244 * 89.99783 * 3 2 1 14 14 O 1.21276 * 120.00373 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99511 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.46921 * 185.55850 * 15 13 3 17 17 C 1.46880 * 110.91111 * 60.37035 * 16 15 13 18 18 C 1.53249 * 109.63924 * 162.34873 * 17 16 15 19 19 S 1.81899 * 108.67294 * 61.88808 * 18 17 16 20 20 C 1.81901 * 101.91204 * 308.59334 * 19 18 17 21 21 C 1.46467 * 111.00080 * 294.30443 * 16 15 13 22 22 H 1.09000 * 109.41040 * 77.64393 * 21 16 15 23 23 C 1.50704 * 109.33933 * 317.83905 * 21 16 15 24 24 O 1.20824 * 120.00234 * 324.76745 * 23 21 16 25 25 O 1.34232 * 119.99950 * 144.75621 * 23 21 16 26 26 C 1.45192 * 116.99978 * 180.02562 * 25 23 21 27 27 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46936 * 299.99896 * 1 2 3 29 29 H 1.08992 * 109.47047 * 60.00675 * 1 2 3 30 30 H 1.09005 * 109.47008 * 239.99301 * 2 1 3 31 31 H 1.09001 * 109.47124 * 120.00139 * 2 1 3 32 32 H 1.09000 * 109.47588 * 29.99977 * 4 3 2 33 33 H 1.09000 * 109.47119 * 149.99700 * 4 3 2 34 34 H 0.96998 * 120.00098 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47875 * 65.56172 * 15 13 3 36 36 H 1.08999 * 109.46963 * 305.55654 * 15 13 3 37 37 H 1.09001 * 109.69204 * 42.18571 * 17 16 15 38 38 H 1.09001 * 109.33609 * 282.28842 * 17 16 15 39 39 H 1.09003 * 109.63341 * 302.08222 * 18 17 16 40 40 H 1.09000 * 109.62644 * 181.68946 * 18 17 16 41 41 H 1.08999 * 109.63286 * 171.00587 * 20 19 18 42 42 H 1.08998 * 109.63221 * 291.59871 * 20 19 18 43 43 H 1.08999 * 109.47030 * 180.02562 * 26 25 23 44 44 H 1.09004 * 109.47429 * 300.00228 * 26 25 23 45 45 H 1.09002 * 109.47278 * 60.00582 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6857 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3497 3.1272 -3.6171 9 14 5.9134 2.0963 -3.4171 10 1 6.1402 0.6396 -3.5954 11 1 6.1613 2.7974 -4.7024 12 1 6.8413 2.6186 -2.3819 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3059 2.4722 16 7 2.1819 2.2454 3.5856 17 6 1.2477 3.3742 3.4841 18 6 1.1508 4.0860 4.8377 19 16 2.7915 4.7424 5.2693 20 6 3.8488 3.2770 5.0608 21 6 3.5791 2.6753 3.6774 22 1 3.7785 3.4247 2.9114 23 6 4.4818 1.4877 3.4632 24 8 4.1545 0.3986 3.8714 25 8 5.6495 1.6398 2.8189 26 6 6.4677 0.4526 2.6482 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1409 -1.1384 34 1 3.6758 3.5177 -4.4430 35 1 2.6913 0.4759 2.5742 36 1 0.9711 0.9250 2.4882 37 1 0.2618 3.0101 3.1949 38 1 1.6088 4.0750 2.7314 39 1 0.8270 3.3786 5.6012 40 1 0.4349 4.9051 4.7702 41 1 4.8966 3.5678 5.1357 42 1 3.6135 2.5430 5.8316 43 1 7.3809 0.7145 2.1138 44 1 6.7237 0.0441 3.6258 45 1 5.9130 -0.2919 2.0772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887073673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:09 Heat of formation + Delta-G solvation = -95.521851 kcal Electronic energy + Delta-G solvation = -28520.991114 eV Core-core repulsion = 24665.888061 eV Total energy + Delta-G solvation = -3855.103053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01454 -39.46156 -37.42458 -36.23346 -35.24409 -32.89743 -32.11804 -31.14835 -30.16690 -27.85960 -27.64568 -25.59149 -24.58695 -23.10272 -22.63948 -22.10071 -20.28134 -18.64571 -17.89369 -17.11896 -16.75670 -16.52867 -16.36111 -15.91705 -15.50726 -15.34905 -15.01584 -14.68313 -14.31163 -13.97159 -13.74116 -13.60614 -13.40896 -13.30830 -12.91002 -12.60610 -12.38512 -12.27076 -12.10467 -12.03912 -11.95116 -11.66444 -11.48384 -11.26239 -11.10061 -10.97729 -10.79739 -10.61035 -10.57296 -10.35396 -10.20120 -9.84155 -9.73644 -9.67012 -8.47698 -8.11958 -7.76200 -7.71588 -6.08819 -4.13655 1.61981 2.06670 2.31285 2.79288 3.21380 3.27751 3.32756 3.35680 3.64622 3.84867 4.40240 4.60092 4.75811 4.79066 4.92446 5.06472 5.11470 5.12891 5.19416 5.23353 5.25749 5.29034 5.34117 5.43055 5.56885 5.57076 5.63120 5.64202 5.70836 5.79954 5.98174 6.09409 6.16627 6.36348 6.40406 6.60185 6.78339 6.98209 7.37111 7.45802 7.75894 7.86446 8.18001 8.30236 8.80638 8.96067 9.51327 10.99303 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.004703 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.950588 B = 5951.872991 C = 6552.674424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.471 3.529 14 O -0.540 6.540 15 C 0.015 3.985 16 N -0.508 5.508 17 C 0.044 3.956 18 C -0.076 4.076 19 S -0.248 6.248 20 C -0.066 4.066 21 C 0.084 3.916 22 H 0.121 0.879 23 C 0.473 3.527 24 O -0.497 6.497 25 O -0.347 6.347 26 C 0.036 3.964 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -4.546 15.506 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 N -0.322 5.322 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.256 3.744 14 O -0.419 6.419 15 C -0.116 4.116 16 N -0.233 5.233 17 C -0.085 4.085 18 C -0.225 4.225 19 S -0.020 6.020 20 C -0.215 4.215 21 C -0.027 4.027 22 H 0.138 0.862 23 C 0.314 3.686 24 O -0.385 6.385 25 O -0.262 6.262 26 C -0.058 4.058 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.438 -3.344 16.189 16.710 hybrid contribution 0.853 -1.333 -1.597 2.248 sum -1.585 -4.677 14.592 15.405 Atomic orbital electron populations 1.22205 0.96540 1.01604 1.02269 1.21456 0.93716 0.84132 1.02783 1.48362 1.62742 1.13186 1.07913 1.19276 0.96316 0.93596 0.78115 1.21332 0.96787 1.32019 1.06302 0.92740 1.24913 0.97786 0.94869 0.96358 1.69912 1.35733 1.33266 1.14365 0.86589 0.84894 0.78231 0.77918 1.20283 1.21117 1.20104 1.21496 0.79078 0.87532 0.86273 1.90610 1.46394 1.17947 1.86964 1.22748 1.05402 0.96618 0.86856 1.61682 1.02420 1.17055 1.42183 1.22547 0.96496 0.93054 0.96380 1.23563 0.95598 1.03013 1.00301 1.86888 1.05711 1.19072 1.90361 1.23380 1.02441 0.98155 0.97564 1.21630 0.87468 0.94310 0.99327 0.86172 1.23439 0.80827 0.90302 0.74057 1.90604 1.73027 1.27822 1.46997 1.86587 1.30872 1.39399 1.69303 1.23304 0.94296 0.86219 1.01963 0.91983 0.93113 0.91960 0.89793 0.91788 0.95082 0.93904 0.92634 0.86630 0.87652 0.89476 0.89475 0.89064 0.87201 0.86860 0.88422 0.87890 0.91972 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.19 37.16 0.38 -1.80 16 2 C 0.10 1.63 5.85 -4.04 -0.02 1.61 16 3 N -0.59 -12.05 2.46 -175.07 -0.43 -12.48 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.24 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.94 16 6 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.47 9.30 7.00 -10.99 -0.08 9.22 16 14 O -0.54 -12.43 11.61 5.56 0.06 -12.36 16 15 C 0.01 0.23 3.70 -4.97 -0.02 0.21 16 16 N -0.51 -7.48 4.36 -229.51 -1.00 -8.48 16 17 C 0.04 0.59 4.74 -3.71 -0.02 0.57 16 18 C -0.08 -0.85 6.67 37.29 0.25 -0.60 16 19 S -0.25 -3.18 22.40 -107.50 -2.41 -5.59 16 20 C -0.07 -0.85 5.95 37.29 0.22 -0.63 16 21 C 0.08 1.30 1.78 -68.97 -0.12 1.17 16 22 H 0.12 2.23 6.01 -51.93 -0.31 1.92 16 23 C 0.47 7.70 5.71 36.01 0.21 7.91 16 24 O -0.50 -8.36 14.48 -18.75 -0.27 -8.63 16 25 O -0.35 -5.68 10.57 -39.26 -0.41 -6.10 16 26 C 0.04 0.46 10.55 101.05 1.07 1.52 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.62 7.13 -51.93 -0.37 0.24 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 1.90 4.68 -51.93 -0.24 1.66 16 36 H 0.11 1.39 6.82 -51.93 -0.35 1.04 16 37 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 38 H 0.09 1.46 5.98 -51.93 -0.31 1.14 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.54 370.24 -8.67 -41.21 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.92 Total: 3.62 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 1.41 Total: 12.17 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.69 Total: -46.45 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.62 Total: -27.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.41 Total: -5.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.54 -8.67 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887073673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.316 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds