Wall clock time and date at job start Tue Mar 31 2020 05:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47179 * 2 1 4 4 C 1.46498 * 119.99822 * 270.00039 * 3 2 1 5 5 C 1.50697 * 109.47141 * 269.99777 * 4 3 2 6 6 H 1.08000 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00186 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47227 * 60.00002 * 9 7 5 11 11 H 1.48494 * 109.47221 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47105 * 300.00103 * 9 7 5 13 13 C 1.34778 * 120.00244 * 89.99783 * 3 2 1 14 14 O 1.21276 * 120.00373 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99511 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.46921 * 185.55850 * 15 13 3 17 17 C 1.46880 * 110.91111 * 60.37035 * 16 15 13 18 18 C 1.53249 * 109.63924 * 162.34873 * 17 16 15 19 19 S 1.81899 * 108.67294 * 61.88808 * 18 17 16 20 20 C 1.81901 * 101.91204 * 308.59334 * 19 18 17 21 21 C 1.46467 * 111.00080 * 294.30443 * 16 15 13 22 22 H 1.09000 * 109.41040 * 77.64393 * 21 16 15 23 23 C 1.50704 * 109.33933 * 317.83905 * 21 16 15 24 24 O 1.20824 * 120.00234 * 324.76745 * 23 21 16 25 25 O 1.34232 * 119.99950 * 144.75621 * 23 21 16 26 26 C 1.45192 * 116.99978 * 180.02562 * 25 23 21 27 27 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46936 * 299.99896 * 1 2 3 29 29 H 1.08992 * 109.47047 * 60.00675 * 1 2 3 30 30 H 1.09005 * 109.47008 * 239.99301 * 2 1 3 31 31 H 1.09001 * 109.47124 * 120.00139 * 2 1 3 32 32 H 1.09000 * 109.47588 * 29.99977 * 4 3 2 33 33 H 1.09000 * 109.47119 * 149.99700 * 4 3 2 34 34 H 0.96998 * 120.00098 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47875 * 65.56172 * 15 13 3 36 36 H 1.08999 * 109.46963 * 305.55654 * 15 13 3 37 37 H 1.09001 * 109.69204 * 42.18571 * 17 16 15 38 38 H 1.09001 * 109.33609 * 282.28842 * 17 16 15 39 39 H 1.09003 * 109.63341 * 302.08222 * 18 17 16 40 40 H 1.09000 * 109.62644 * 181.68946 * 18 17 16 41 41 H 1.08999 * 109.63286 * 171.00587 * 20 19 18 42 42 H 1.08998 * 109.63221 * 291.59871 * 20 19 18 43 43 H 1.08999 * 109.47030 * 180.02562 * 26 25 23 44 44 H 1.09004 * 109.47429 * 300.00228 * 26 25 23 45 45 H 1.09002 * 109.47278 * 60.00582 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6857 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 3.3497 3.1272 -3.6171 9 14 5.9134 2.0963 -3.4171 10 1 6.1402 0.6396 -3.5954 11 1 6.1613 2.7974 -4.7024 12 1 6.8413 2.6186 -2.3819 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3059 2.4722 16 7 2.1819 2.2454 3.5856 17 6 1.2477 3.3742 3.4841 18 6 1.1508 4.0860 4.8377 19 16 2.7915 4.7424 5.2693 20 6 3.8488 3.2770 5.0608 21 6 3.5791 2.6753 3.6774 22 1 3.7785 3.4247 2.9114 23 6 4.4818 1.4877 3.4632 24 8 4.1545 0.3986 3.8714 25 8 5.6495 1.6398 2.8189 26 6 6.4677 0.4526 2.6482 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1409 -1.1384 34 1 3.6758 3.5177 -4.4430 35 1 2.6913 0.4759 2.5742 36 1 0.9711 0.9250 2.4882 37 1 0.2618 3.0101 3.1949 38 1 1.6088 4.0750 2.7314 39 1 0.8270 3.3786 5.6012 40 1 0.4349 4.9051 4.7702 41 1 4.8966 3.5678 5.1357 42 1 3.6135 2.5430 5.8316 43 1 7.3809 0.7145 2.1138 44 1 6.7237 0.0441 3.6258 45 1 5.9130 -0.2919 2.0772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887073673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:09 Heat of formation + Delta-G solvation = -116.845360 kcal Electronic energy + Delta-G solvation = -28521.915771 eV Core-core repulsion = 24665.888061 eV Total energy + Delta-G solvation = -3856.027710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29534 -40.90103 -38.74373 -37.50639 -36.79249 -34.95979 -33.23825 -32.38257 -31.60065 -29.38507 -28.89974 -27.11077 -25.69120 -24.77477 -24.05966 -23.31217 -21.54970 -20.11475 -19.18263 -18.66430 -18.33808 -18.03487 -17.82058 -17.01692 -17.00041 -16.53926 -16.44525 -16.16842 -15.88884 -15.18842 -14.98735 -14.79530 -14.69574 -14.46553 -14.29472 -14.02652 -13.79416 -13.46687 -13.39861 -13.30894 -13.18171 -13.05990 -13.05429 -12.67432 -12.55478 -12.50852 -12.35529 -12.16800 -11.95817 -11.82622 -11.73084 -11.53039 -11.27659 -10.79993 -10.66066 -9.53333 -9.43937 -8.74244 -8.24496 -6.38972 0.59768 0.86709 1.26969 1.33638 1.37822 1.44778 1.67784 1.71986 2.23035 2.39982 2.51303 3.05351 3.45471 3.58008 3.61167 3.73077 3.97593 4.02805 4.09145 4.16282 4.23413 4.24826 4.30829 4.36318 4.38407 4.42368 4.57051 4.59896 4.63245 4.68519 4.89315 4.93331 5.01027 5.02209 5.17173 5.18227 5.32893 5.41565 5.54060 5.60639 5.81188 6.03975 6.52172 6.64616 6.73279 7.23873 7.39218 8.82286 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.004703 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.950588 B = 5951.872991 C = 6552.674424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.961 3.039 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.465 3.535 14 O -0.579 6.579 15 C 0.028 3.972 16 N -0.498 5.498 17 C 0.044 3.956 18 C -0.064 4.064 19 S -0.272 6.272 20 C -0.057 4.057 21 C 0.084 3.916 22 H 0.085 0.915 23 C 0.473 3.527 24 O -0.503 6.503 25 O -0.368 6.368 26 C 0.028 3.972 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.020 0.980 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -6.297 17.153 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.329 5.329 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.252 3.748 14 O -0.460 6.460 15 C -0.102 4.102 16 N -0.222 5.222 17 C -0.085 4.085 18 C -0.212 4.212 19 S -0.045 6.045 20 C -0.206 4.206 21 C -0.027 4.027 22 H 0.103 0.897 23 C 0.314 3.686 24 O -0.392 6.392 25 O -0.283 6.283 26 C -0.065 4.065 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.128 0.872 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.601 -5.130 17.859 18.763 hybrid contribution 0.889 -0.774 -2.122 2.427 sum -1.711 -5.904 15.738 16.896 Atomic orbital electron populations 1.22135 0.93982 1.03680 1.01901 1.21742 0.95794 0.81479 1.03506 1.48380 1.63196 1.14877 1.06459 1.18677 0.95172 0.91511 0.80310 1.21593 0.97775 1.31980 1.06486 0.93329 1.25799 1.02157 0.94459 0.96413 1.70032 1.37741 1.34070 1.14792 0.85559 0.79379 0.79025 0.77462 1.18488 1.20350 1.20201 1.22344 0.77931 0.87203 0.87306 1.90612 1.47842 1.19942 1.87648 1.22763 1.07085 0.96083 0.84308 1.61849 1.02190 1.17333 1.40839 1.22574 0.96786 0.92124 0.96975 1.23606 0.94647 1.03786 0.99145 1.86999 1.07370 1.19913 1.90200 1.23355 1.03127 0.98084 0.96017 1.21598 0.87897 0.93316 0.99886 0.89731 1.23529 0.80910 0.90329 0.73842 1.90585 1.73243 1.27917 1.47430 1.86573 1.31280 1.41241 1.69235 1.23589 0.94334 0.85152 1.03420 0.88609 0.91838 0.93976 0.90942 0.89174 0.96203 0.98376 0.92426 0.86839 0.84411 0.87500 0.93083 0.87071 0.85240 0.85951 0.87173 0.85994 0.89912 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.19 71.98 0.73 -3.05 16 2 C 0.10 2.97 5.85 86.38 0.51 3.47 16 3 N -0.60 -24.80 2.46 -826.17 -2.03 -26.83 16 4 C 0.26 14.10 5.16 85.63 0.44 14.54 16 5 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.63 5.46 84.66 0.46 1.09 16 8 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 9 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.46 18.57 7.00 87.66 0.61 19.18 16 14 O -0.58 -27.87 11.61 -3.02 -0.04 -27.90 16 15 C 0.03 0.84 3.70 85.56 0.32 1.16 16 16 N -0.50 -13.97 4.36 -880.05 -3.84 -17.80 16 17 C 0.04 1.13 4.74 86.39 0.41 1.54 16 18 C -0.06 -1.28 6.67 72.07 0.48 -0.80 16 19 S -0.27 -6.73 22.40 -56.49 -1.27 -7.99 16 20 C -0.06 -1.40 5.95 72.07 0.43 -0.97 16 21 C 0.08 2.59 1.78 44.34 0.08 2.67 16 22 H 0.08 3.28 6.01 -2.39 -0.01 3.26 16 23 C 0.47 15.11 5.71 71.24 0.41 15.52 16 24 O -0.50 -16.16 14.48 21.97 0.32 -15.84 16 25 O -0.37 -12.02 10.57 -51.44 -0.54 -12.56 16 26 C 0.03 0.68 10.55 113.37 1.20 1.88 16 27 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.35 7.13 -2.39 -0.02 1.33 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 31 H 0.09 2.28 6.59 -2.39 -0.02 2.27 16 32 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.11 3.52 4.68 -2.39 -0.01 3.50 16 36 H 0.14 3.17 6.82 -2.39 -0.02 3.16 16 37 H 0.11 2.32 7.92 -2.39 -0.02 2.30 16 38 H 0.05 1.74 5.98 -2.39 -0.01 1.73 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.08 1.65 8.13 -2.38 -0.02 1.63 16 45 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -73.62 370.24 2.22 -71.40 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.99 Total: 20.86 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 6.31 Total: 25.59 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -5.58 Total: -100.15 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -0.26 Total: -56.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.27 Total: -7.99 kcal Total: -73.62 2.22 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887073673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.449 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds