Wall clock time and date at job start Tue Mar 31 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46921 * 2 1 4 4 C 1.45751 * 117.94823 * 270.01943 * 3 2 1 5 5 C 1.52914 * 110.48702 * 199.07844 * 4 3 2 6 6 C 1.53331 * 108.68841 * 309.25526 * 5 4 3 7 7 C 1.53070 * 108.43117 * 67.50852 * 6 5 4 8 8 H 1.08999 * 109.33248 * 71.19763 * 7 6 5 9 9 N 1.46500 * 109.39889 * 190.97868 * 7 6 5 10 10 S 1.65597 * 120.00054 * 215.15603 * 9 7 6 11 11 O 1.42104 * 104.27895 * 181.34707 * 10 9 7 12 12 O 1.42101 * 104.27961 * 309.20144 * 10 9 7 13 13 C 1.81399 * 104.45333 * 65.27542 * 10 9 7 14 14 C 1.52993 * 109.47530 * 173.68621 * 13 10 9 15 15 C 1.50702 * 115.55135 * 65.18808 * 14 13 10 16 16 H 1.07994 * 120.00271 * 264.78803 * 15 14 13 17 17 C 1.37883 * 119.99651 * 84.78391 * 15 14 13 18 18 N 1.31520 * 119.99836 * 352.23651 * 17 15 14 19 19 Si 1.86795 * 119.99948 * 172.23451 * 17 15 14 20 20 H 1.48498 * 109.47026 * 59.99890 * 19 17 15 21 21 H 1.48493 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47240 * 300.00505 * 19 17 15 23 23 C 1.53006 * 117.50000 * 279.52204 * 14 13 10 24 24 C 1.53004 * 117.49931 * 210.86171 * 14 13 10 25 25 C 1.33354 * 117.94303 * 90.00317 * 3 2 1 26 26 O 1.21283 * 118.24911 * 357.77685 * 25 3 2 27 27 H 1.09008 * 109.46642 * 299.99967 * 1 2 3 28 28 H 1.09002 * 109.47250 * 59.99674 * 1 2 3 29 29 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46967 * 240.00382 * 2 1 3 31 31 H 1.08998 * 109.46777 * 120.00239 * 2 1 3 32 32 H 1.08995 * 109.30251 * 319.39362 * 4 3 2 33 33 H 1.08999 * 109.29893 * 78.97246 * 4 3 2 34 34 H 1.09000 * 109.60501 * 69.00615 * 5 4 3 35 35 H 1.09003 * 109.60587 * 189.33230 * 5 4 3 36 36 H 1.08999 * 109.65812 * 307.78117 * 6 5 4 37 37 H 1.09000 * 109.67504 * 187.25232 * 6 5 4 38 38 H 0.97001 * 119.99948 * 35.43157 * 9 7 6 39 39 H 1.09003 * 109.46878 * 293.68941 * 13 10 9 40 40 H 1.09003 * 109.46813 * 53.68271 * 13 10 9 41 41 H 0.96999 * 119.99090 * 185.02594 * 18 17 15 42 42 H 1.09007 * 117.49548 * 359.97438 * 23 14 13 43 43 H 1.08997 * 117.49885 * 145.01700 * 23 14 13 44 44 H 1.08997 * 117.49838 * 214.97738 * 24 14 13 45 45 H 1.08993 * 117.49744 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2456 2.0255 -1.2875 5 6 3.1693 3.2333 -1.1260 6 6 2.6266 4.1195 0.0015 7 6 2.7709 3.3624 1.3241 8 1 3.8247 3.3123 1.5981 9 7 2.0287 4.0677 2.3719 10 16 2.6094 4.0949 3.9225 11 8 1.6318 4.8258 4.6501 12 8 2.8768 2.7315 4.2207 13 6 4.1555 5.0370 3.8105 14 6 4.7147 5.2687 5.2156 15 6 5.1468 4.0291 5.9557 16 1 4.4678 3.5460 6.6426 17 6 6.4091 3.5117 5.7558 18 7 7.1800 4.0051 4.8113 19 14 7.0244 2.1101 6.8264 20 1 6.1270 0.9372 6.6702 21 1 8.4014 1.7389 6.4128 22 1 7.0338 2.5401 8.2477 23 6 4.1085 6.4074 6.0384 24 6 5.5164 6.5497 5.4546 25 6 2.2267 1.9704 1.1781 26 8 1.9630 1.3486 2.1854 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7030 1.3111 -1.9720 33 1 1.2918 2.3573 -1.6976 34 1 4.1739 2.8943 -0.8731 35 1 3.1978 3.7991 -2.0573 36 1 1.5754 4.3424 -0.1809 37 1 3.1968 5.0474 0.0457 38 1 1.1951 4.5153 2.1583 39 1 4.8800 4.4773 3.2188 40 1 3.9617 5.9978 3.3335 41 1 8.0382 3.5945 4.6221 42 1 3.3115 6.9917 5.5783 43 1 4.0226 6.2600 7.1149 44 1 6.3561 6.4960 6.1474 45 1 5.6458 7.2272 4.6107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921490897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:54 Heat of formation + Delta-G solvation = -79.182938 kcal Electronic energy + Delta-G solvation = -28110.856837 eV Core-core repulsion = 24256.462292 eV Total energy + Delta-G solvation = -3854.394545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56639 -36.72221 -36.44657 -36.19629 -35.83592 -34.84811 -32.84324 -32.00045 -30.04561 -28.42690 -28.13456 -25.41574 -24.63323 -23.29533 -22.07163 -21.18691 -19.77172 -18.80348 -18.51222 -17.17753 -16.81653 -16.64535 -16.21117 -15.95882 -15.20587 -14.92491 -14.67239 -14.25300 -14.14402 -14.03121 -13.81690 -13.69043 -13.48973 -13.06609 -12.60933 -12.40450 -12.01038 -11.90080 -11.84664 -11.78127 -11.47277 -11.28100 -11.15903 -11.10478 -10.96479 -10.92871 -10.86115 -10.80439 -10.52219 -10.41030 -10.22412 -9.99930 -9.61156 -8.96792 -8.92664 -8.70318 -8.52003 -8.05271 -6.10443 -4.20020 1.13492 2.78238 2.95662 3.36963 3.37906 3.46777 3.53534 4.41622 4.42321 4.48675 4.50670 4.59743 4.70815 4.98725 5.06043 5.11642 5.13489 5.18815 5.20541 5.24255 5.27264 5.36341 5.41018 5.53848 5.60505 5.66784 5.74644 5.86611 5.92924 6.00910 6.08750 6.12993 6.28971 6.39328 6.47059 6.63262 6.74904 7.00017 7.16414 7.28556 7.41659 7.49765 7.84934 8.24439 8.36740 8.85334 9.51017 10.97333 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.004429 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.405511 B = 6320.733859 C = 6865.869479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.610 5.610 4 C 0.115 3.885 5 C -0.137 4.137 6 C -0.129 4.129 7 C 0.148 3.852 8 H 0.117 0.883 9 N -1.113 6.113 10 S 2.599 3.401 11 O -0.975 6.975 12 O -0.918 6.918 13 C -0.558 4.558 14 C 0.045 3.955 15 C -0.514 4.514 16 H 0.068 0.932 17 C 0.083 3.917 18 N -0.877 5.877 19 Si 0.890 3.110 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.208 4.208 24 C -0.141 4.141 25 C 0.490 3.510 26 O -0.498 6.498 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -0.537 -17.725 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.347 5.347 4 C -0.009 4.009 5 C -0.175 4.175 6 C -0.168 4.168 7 C 0.036 3.964 8 H 0.134 0.866 9 N -0.867 5.867 10 S 2.695 3.305 11 O -0.965 6.965 12 O -0.908 6.908 13 C -0.690 4.690 14 C 0.042 3.958 15 C -0.551 4.551 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.513 5.513 19 Si 0.716 3.284 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.246 4.246 24 C -0.181 4.181 25 C 0.274 3.726 26 O -0.370 6.370 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.242 0.758 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.411 -1.355 -16.405 18.485 hybrid contribution 0.576 -0.144 -0.285 0.659 sum -7.835 -1.499 -16.689 18.498 Atomic orbital electron populations 1.22085 0.96073 1.02008 1.02161 1.21461 0.94465 0.82807 1.03190 1.47470 1.66833 1.14625 1.05759 1.21381 0.99340 0.95137 0.85000 1.21892 0.99934 0.95992 0.99678 1.22011 1.02950 0.99331 0.92509 1.20514 0.97248 0.88819 0.89808 0.86553 1.56054 1.35401 1.67177 1.28102 1.05558 0.76846 0.76214 0.71872 1.93501 1.58689 1.75409 1.68918 1.93641 1.85413 1.31235 1.80469 1.30034 1.19246 1.11897 1.07833 1.18255 0.99327 0.90493 0.87693 1.20495 0.99301 1.09486 1.25830 0.91373 1.24929 0.96103 0.96284 0.94846 1.69970 1.11476 1.39970 1.29835 0.86664 0.77821 0.82847 0.81035 1.19381 1.21162 1.19884 1.23198 0.96393 1.05048 0.99932 1.22552 0.93365 1.00656 1.01488 1.20749 0.79247 0.89439 0.83123 1.90872 1.48262 1.62931 1.34886 0.92056 0.92947 0.91828 0.90907 0.89448 0.90737 0.91988 0.90304 0.89254 0.90468 0.89489 0.75776 0.85128 0.88364 0.92768 0.90704 0.89527 0.89600 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.23 37.16 0.38 -1.27 16 2 C 0.10 1.13 5.92 -4.04 -0.02 1.10 16 3 N -0.61 -7.19 2.81 -174.97 -0.49 -7.68 16 4 C 0.11 0.86 6.39 -4.49 -0.03 0.83 16 5 C -0.14 -0.95 6.02 -26.60 -0.16 -1.11 16 6 C -0.13 -1.15 5.56 -26.52 -0.15 -1.30 16 7 C 0.15 2.08 2.80 -69.30 -0.19 1.88 16 8 H 0.12 1.70 7.31 -51.93 -0.38 1.32 16 9 N -1.11 -17.54 5.13 -6.07 -0.03 -17.57 16 10 S 2.60 55.46 5.11 -107.50 -0.55 54.91 16 11 O -0.97 -22.51 18.08 -57.54 -1.04 -23.55 16 12 O -0.92 -23.76 15.59 -65.51 -1.02 -24.78 16 13 C -0.56 -11.78 5.77 37.15 0.21 -11.57 16 14 C 0.04 1.10 1.32 -155.66 -0.21 0.90 16 15 C -0.51 -14.37 8.19 -34.44 -0.28 -14.65 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C 0.08 2.31 5.38 -17.81 -0.10 2.21 16 18 N -0.88 -24.24 12.98 55.43 0.72 -23.52 16 19 Si 0.89 21.91 29.55 -169.99 -5.02 16.89 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.21 -4.67 9.96 -26.69 -0.27 -4.93 16 24 C -0.14 -3.24 9.49 -26.69 -0.25 -3.50 16 25 C 0.49 7.82 7.19 -11.87 -0.09 7.73 16 26 O -0.50 -10.50 14.02 -13.90 -0.19 -10.69 16 27 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.58 7.86 -51.93 -0.41 0.17 16 31 H 0.09 1.18 7.20 -51.93 -0.37 0.81 16 32 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.61 8.12 -51.93 -0.42 0.18 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 5.34 8.79 -34.47 -0.30 5.04 16 39 H 0.13 2.82 7.65 -51.92 -0.40 2.42 16 40 H 0.10 1.72 8.09 -51.92 -0.42 1.30 16 41 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -37.12 377.43 -10.40 -47.52 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.31 Total: 6.45 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -1.15 Total: -23.66 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.20 Total: -48.77 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.26 Total: -59.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.55 Total: 54.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.12 -10.40 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921490897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.661 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds