Wall clock time and date at job start Tue Mar 31 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46942 * 2 1 4 4 C 1.45756 * 117.94420 * 90.00427 * 3 2 1 5 5 C 1.52922 * 110.48696 * 160.92186 * 4 3 2 6 6 C 1.53345 * 108.67183 * 50.75257 * 5 4 3 7 7 C 1.53071 * 108.42726 * 292.46691 * 6 5 4 8 8 H 1.09000 * 109.40015 * 288.85691 * 7 6 5 9 9 N 1.46498 * 109.40034 * 169.02858 * 7 6 5 10 10 S 1.65603 * 119.99494 * 144.82873 * 9 7 6 11 11 O 1.42093 * 104.27996 * 308.92576 * 10 9 7 12 12 O 1.42106 * 104.27346 * 181.07148 * 10 9 7 13 13 C 1.81395 * 104.44938 * 65.00208 * 10 9 7 14 14 C 1.53001 * 109.47135 * 173.53409 * 13 10 9 15 15 C 1.50702 * 115.54836 * 295.08418 * 14 13 10 16 16 H 1.08004 * 120.00063 * 99.49965 * 15 14 13 17 17 C 1.37875 * 120.00060 * 279.48830 * 15 14 13 18 18 N 1.31518 * 120.00076 * 6.40983 * 17 15 14 19 19 Si 1.86799 * 120.00150 * 186.40466 * 17 15 14 20 20 H 1.48502 * 109.47335 * 270.00244 * 19 17 15 21 21 H 1.48502 * 109.47338 * 150.00667 * 19 17 15 22 22 H 1.48496 * 109.47080 * 30.00412 * 19 17 15 23 23 C 1.53003 * 117.51833 * 80.78397 * 14 13 10 24 24 C 1.53001 * 117.49847 * 149.41303 * 14 13 10 25 25 C 1.33232 * 117.98440 * 270.07677 * 3 2 1 26 26 O 1.21279 * 118.15968 * 2.21225 * 25 3 2 27 27 H 1.09001 * 109.46634 * 299.99316 * 1 2 3 28 28 H 1.08995 * 109.47304 * 59.99582 * 1 2 3 29 29 H 1.08999 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46981 * 240.00343 * 2 1 3 31 31 H 1.08995 * 109.47304 * 120.00418 * 2 1 3 32 32 H 1.09003 * 109.30042 * 40.61147 * 4 3 2 33 33 H 1.08999 * 109.30152 * 281.23850 * 4 3 2 34 34 H 1.08994 * 109.60464 * 290.99754 * 5 4 3 35 35 H 1.09003 * 109.59993 * 170.50799 * 5 4 3 36 36 H 1.09005 * 109.67041 * 172.73413 * 6 5 4 37 37 H 1.09002 * 109.67600 * 52.20528 * 6 5 4 38 38 H 0.96999 * 119.99944 * 324.82857 * 9 7 6 39 39 H 1.09007 * 109.47503 * 53.53452 * 13 10 9 40 40 H 1.08992 * 109.47193 * 293.53126 * 13 10 9 41 41 H 0.96996 * 119.99897 * 354.96961 * 18 17 15 42 42 H 1.09003 * 117.49864 * 214.97394 * 23 14 13 43 43 H 1.09004 * 117.49582 * 359.97438 * 23 14 13 44 44 H 1.08999 * 117.49618 * 359.97438 * 24 14 13 45 45 H 1.09004 * 117.49560 * 144.98049 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2461 2.0252 1.2876 5 6 3.1697 3.2332 1.1260 6 6 2.6262 4.1194 -0.0012 7 6 2.7704 3.3627 -1.3240 8 1 3.8239 3.3117 -1.5989 9 7 2.0276 4.0679 -2.3715 10 16 2.6082 4.0959 -3.9221 11 8 3.9553 4.5268 -3.7843 12 8 1.6594 4.8753 -4.6375 13 6 2.5454 2.3648 -4.4603 14 6 2.9088 2.2785 -5.9441 15 6 1.9457 2.9497 -6.8891 16 1 2.1662 3.9336 -7.2761 17 6 0.7833 2.3077 -7.2599 18 7 0.4526 1.1674 -6.6940 19 14 -0.3221 3.0574 -8.5658 20 1 -1.3158 3.9518 -7.9194 21 1 -1.0309 1.9753 -9.2952 22 1 0.5016 3.8410 -9.5211 23 6 4.3939 2.3065 -6.3110 24 6 3.6012 1.0031 -6.4288 25 6 2.2252 1.9712 -1.1765 26 8 1.9601 1.3490 -2.1833 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.7038 1.3107 1.9718 33 1 1.2920 2.3537 1.6999 34 1 4.1742 2.8942 0.8726 35 1 3.1964 3.8002 2.0565 36 1 3.1961 5.0476 -0.0454 37 1 1.5749 4.3421 0.1815 38 1 1.1958 4.5183 -2.1567 39 1 1.5393 1.9736 -4.3093 40 1 3.2549 1.7773 -3.8778 41 1 1.0607 0.7415 -6.0699 42 1 4.6744 2.8104 -7.2360 43 1 5.1124 2.3868 -5.4952 44 1 3.7982 0.2258 -5.6906 45 1 3.3599 0.6494 -7.4312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921490898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:57 Heat of formation + Delta-G solvation = -84.094778 kcal Electronic energy + Delta-G solvation = -28497.744712 eV Core-core repulsion = 24643.137174 eV Total energy + Delta-G solvation = -3854.607538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.77727 -36.94440 -36.62745 -36.36764 -35.92609 -35.06889 -32.91844 -31.83684 -30.13749 -28.60471 -27.98411 -24.79287 -24.72771 -23.40873 -22.18905 -21.29496 -19.87046 -18.96658 -18.63766 -17.30684 -16.91285 -16.89273 -16.60101 -16.04458 -15.39307 -15.12056 -14.41020 -14.35601 -14.14974 -13.96645 -13.74993 -13.64816 -13.60428 -12.97100 -12.70134 -12.52009 -12.31496 -12.07570 -11.96675 -11.63718 -11.55219 -11.35960 -11.25427 -11.17599 -11.12343 -10.95927 -10.92380 -10.67746 -10.58311 -10.41182 -10.06932 -9.97236 -9.58710 -9.05917 -8.86900 -8.52638 -8.32858 -8.14258 -6.28413 -4.04813 1.12131 2.52299 2.79730 3.41768 3.53458 3.57110 3.72420 4.28643 4.35843 4.38670 4.49437 4.60120 4.63221 4.89480 4.96819 4.98829 5.07283 5.09884 5.16581 5.17141 5.31556 5.33940 5.39792 5.43675 5.57637 5.67270 5.68512 5.82557 5.87429 5.93732 6.11348 6.14144 6.25459 6.33319 6.37148 6.62317 6.68407 6.91978 7.10196 7.24277 7.27913 7.34709 8.13103 8.21990 8.52535 8.94391 9.72413 11.11571 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004712 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.335637 B = 5940.435461 C = 6566.558519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.112 3.888 5 C -0.135 4.135 6 C -0.126 4.126 7 C 0.142 3.858 8 H 0.121 0.879 9 N -1.110 6.110 10 S 2.602 3.398 11 O -0.983 6.983 12 O -0.940 6.940 13 C -0.535 4.535 14 C 0.021 3.979 15 C -0.581 4.581 16 H 0.062 0.938 17 C 0.035 3.965 18 N -0.902 5.902 19 Si 1.068 2.932 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.287 1.287 23 C -0.201 4.201 24 C -0.162 4.162 25 C 0.489 3.511 26 O -0.519 6.519 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.414 0.586 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.277 0.723 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 0.190 20.837 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.338 5.338 4 C -0.011 4.011 5 C -0.174 4.174 6 C -0.165 4.165 7 C 0.030 3.970 8 H 0.138 0.862 9 N -0.865 5.865 10 S 2.701 3.299 11 O -0.973 6.973 12 O -0.931 6.931 13 C -0.669 4.669 14 C 0.018 3.982 15 C -0.618 4.618 16 H 0.080 0.920 17 C -0.171 4.171 18 N -0.536 5.536 19 Si 0.896 3.104 20 H -0.211 1.211 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.238 4.238 24 C -0.202 4.202 25 C 0.274 3.726 26 O -0.394 6.394 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.493 0.417 19.015 19.183 hybrid contribution 0.890 -0.436 1.322 1.652 sum 3.384 -0.019 20.337 20.617 Atomic orbital electron populations 1.22085 0.95704 1.02295 1.02371 1.21510 0.94802 0.82353 1.03236 1.47410 1.65875 1.14721 1.05747 1.21434 0.99624 0.95184 0.84873 1.21899 0.99718 0.95957 0.99797 1.21962 1.03134 0.99336 0.92104 1.20567 0.97437 0.88510 0.90475 0.86183 1.55955 1.37062 1.67075 1.26364 1.05284 0.73980 0.79014 0.71647 1.93480 1.37475 1.81167 1.85159 1.93572 1.62159 1.67875 1.69456 1.30000 1.11209 1.20175 1.05508 1.18720 0.91009 0.99561 0.88910 1.21375 1.06631 1.04460 1.29344 0.92023 1.25757 0.96729 0.95768 0.98877 1.70687 1.37611 1.17583 1.27682 0.83581 0.75773 0.75399 0.75682 1.21099 1.21148 1.21248 1.23075 0.95342 1.03031 1.02391 1.22756 1.05264 0.90563 1.01581 1.20927 0.78858 0.89484 0.83324 1.90868 1.49948 1.63762 1.34836 0.92954 0.91729 0.91653 0.89307 0.90835 0.90566 0.91689 0.90425 0.89141 0.89422 0.90329 0.75257 0.84402 0.87795 0.91134 0.89394 0.90640 0.91231 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.23 37.16 0.38 -1.33 16 2 C 0.10 1.05 5.92 -4.04 -0.02 1.03 16 3 N -0.60 -6.38 2.81 -174.99 -0.49 -6.87 16 4 C 0.11 0.74 6.39 -4.48 -0.03 0.71 16 5 C -0.14 -0.82 6.02 -26.59 -0.16 -0.98 16 6 C -0.13 -1.09 5.56 -26.52 -0.15 -1.24 16 7 C 0.14 1.87 2.93 -69.30 -0.20 1.66 16 8 H 0.12 1.59 7.47 -51.93 -0.39 1.20 16 9 N -1.11 -17.83 5.17 -6.07 -0.03 -17.87 16 10 S 2.60 56.41 5.34 -107.50 -0.57 55.83 16 11 O -0.98 -22.11 17.39 -57.54 -1.00 -23.11 16 12 O -0.94 -23.90 17.07 -57.54 -0.98 -24.89 16 13 C -0.53 -12.46 3.93 37.16 0.15 -12.32 16 14 C 0.02 0.53 0.85 -155.66 -0.13 0.40 16 15 C -0.58 -16.89 7.62 -34.44 -0.26 -17.15 16 16 H 0.06 1.84 7.82 -52.48 -0.41 1.43 16 17 C 0.04 1.04 5.42 -17.82 -0.10 0.94 16 18 N -0.90 -27.34 13.61 55.43 0.75 -26.59 16 19 Si 1.07 26.51 29.91 -169.99 -5.08 21.43 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 C -0.20 -4.67 9.96 -26.73 -0.27 -4.93 16 24 C -0.16 -3.89 9.03 -26.73 -0.24 -4.13 16 25 C 0.49 6.93 7.18 -11.92 -0.09 6.84 16 26 O -0.52 -9.53 11.47 5.56 0.06 -9.46 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.11 7.20 -51.93 -0.37 0.74 16 31 H 0.07 0.53 7.86 -51.93 -0.41 0.12 16 32 H 0.08 0.36 7.92 -51.93 -0.41 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.41 5.81 8.79 -34.48 -0.30 5.50 16 39 H 0.14 3.49 6.65 -51.92 -0.35 3.15 16 40 H 0.10 2.22 6.87 -51.93 -0.36 1.86 16 41 H 0.28 8.35 6.05 -40.82 -0.25 8.10 16 42 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -37.19 369.40 -10.01 -47.20 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.11 Total: 9.25 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -1.12 Total: -30.49 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.23 Total: -51.33 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -1.92 Total: -57.46 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.43 kcal Atomic # 16 Polarization: 56.41 SS G_CDS: -0.57 Total: 55.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.19 -10.01 -47.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921490898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.899 kcal (2) G-P(sol) polarization free energy of solvation -37.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds