Wall clock time and date at job start Tue Mar 31 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47210 * 2 1 4 4 C 1.34779 * 119.99479 * 84.22943 * 3 2 1 5 5 O 1.21287 * 120.00094 * 3.56849 * 4 3 2 6 6 C 1.50698 * 119.99835 * 183.56605 * 4 3 2 7 7 H 1.09001 * 109.38580 * 306.34960 * 6 4 3 8 8 C 1.52590 * 109.38673 * 186.56206 * 6 4 3 9 9 C 1.52581 * 110.64423 * 169.85796 * 8 6 4 10 10 C 1.53032 * 109.98898 * 69.98191 * 9 8 6 11 11 S 1.81672 * 108.99993 * 296.35333 * 10 9 8 12 12 O 1.42098 * 108.66156 * 168.62506 * 11 10 9 13 13 O 1.42095 * 108.66261 * 299.96830 * 11 10 9 14 14 C 1.53039 * 109.38522 * 66.03283 * 6 4 3 15 15 C 1.46493 * 120.00334 * 264.22968 * 3 2 1 16 16 C 1.53947 * 113.83964 * 317.35786 * 15 3 2 17 17 N 1.47582 * 86.11880 * 90.74818 * 16 15 3 18 18 C 1.36934 * 134.49787 * 204.63729 * 17 16 15 19 19 H 1.07997 * 120.00083 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99767 * 0.02562 * 18 17 16 21 21 N 1.31614 * 120.00135 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47151 * 59.99707 * 22 20 18 24 24 H 1.48498 * 109.47119 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46943 * 299.99731 * 22 20 18 26 26 C 1.47590 * 91.01087 * 24.64315 * 17 16 15 27 27 H 1.09001 * 109.47337 * 66.14346 * 1 2 3 28 28 H 1.09004 * 109.47524 * 186.14287 * 1 2 3 29 29 H 1.09004 * 109.47187 * 306.14014 * 1 2 3 30 30 H 1.09002 * 109.46819 * 240.00112 * 2 1 3 31 31 H 1.09000 * 109.47432 * 120.00648 * 2 1 3 32 32 H 1.09000 * 109.23614 * 290.15697 * 8 6 4 33 33 H 1.09002 * 109.24071 * 49.59571 * 8 6 4 34 34 H 1.09001 * 109.38557 * 190.14563 * 9 8 6 35 35 H 1.09002 * 109.38436 * 309.82200 * 9 8 6 36 36 H 1.09000 * 109.54895 * 56.21273 * 10 9 8 37 37 H 1.08998 * 109.55386 * 176.49899 * 10 9 8 38 38 H 1.09000 * 109.54723 * 303.66468 * 14 6 4 39 39 H 1.09001 * 109.54313 * 63.95231 * 14 6 4 40 40 H 1.08996 * 112.94635 * 185.67508 * 15 3 2 41 41 H 1.08997 * 113.77078 * 205.05389 * 16 15 3 42 42 H 1.08998 * 113.76838 * 336.45271 * 16 15 3 43 43 H 0.97005 * 119.99965 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.76575 * 221.06146 * 26 17 16 45 45 H 1.08992 * 113.76772 * 89.65899 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1323 2.0556 1.1614 5 8 1.8925 1.4989 2.2119 6 6 2.5576 3.5013 1.1546 7 1 3.4922 3.6009 0.6024 8 6 2.7646 3.9751 2.5902 9 6 3.4320 5.3471 2.6129 10 6 2.4557 6.4121 2.1085 11 16 2.0489 6.0667 0.3719 12 8 0.9539 6.8876 -0.0105 13 8 3.2469 6.1023 -0.3915 14 6 1.4767 4.3456 0.4757 15 6 2.3827 2.0294 -1.2622 16 6 3.1824 1.1252 -2.2177 17 7 1.8748 0.7263 -2.7737 18 6 1.4114 -0.3762 -3.4405 19 1 0.3780 -0.4253 -3.7503 20 6 2.2701 -1.4309 -3.7185 21 7 3.5294 -1.3714 -3.3406 22 14 1.6378 -2.9353 -4.6276 23 1 1.1254 -2.5290 -5.9608 24 1 2.7437 -3.9116 -4.7982 25 1 0.5416 -3.5617 -3.8457 26 6 1.2670 1.9933 -2.3223 27 1 -0.3634 0.4156 -0.9399 28 1 -0.3634 -1.0218 0.1100 29 1 -0.3634 0.6061 0.8299 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7983 4.0374 3.0907 33 1 3.3966 3.2601 3.1169 34 1 3.7330 5.5861 3.6329 35 1 4.3133 5.3313 1.9716 36 1 1.5460 6.3864 2.7084 37 1 2.9176 7.3964 2.1860 38 1 1.2906 3.9619 -0.5274 39 1 0.5582 4.3012 1.0609 40 1 2.8226 3.0167 -1.1214 41 1 3.8095 1.6742 -2.9202 42 1 3.7119 0.3153 -1.7160 43 1 4.1295 -2.1082 -3.5352 44 1 0.2672 1.8764 -1.9039 45 1 1.3315 2.7971 -3.0555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952392008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:07 Heat of formation + Delta-G solvation = -41.492605 kcal Electronic energy + Delta-G solvation = -28471.539891 eV Core-core repulsion = 24618.779721 eV Total energy + Delta-G solvation = -3852.760169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.42444 -38.20790 -37.31731 -36.47402 -36.20636 -34.12781 -32.65906 -32.06462 -30.02010 -27.98713 -27.49809 -25.12953 -24.81707 -23.47952 -22.67113 -21.12915 -20.26307 -19.08023 -18.30706 -17.38465 -16.80507 -16.68533 -16.54581 -15.90730 -15.50615 -15.35553 -14.91576 -14.49599 -14.40917 -14.03733 -13.88935 -13.59589 -13.22078 -12.90393 -12.87062 -12.76176 -12.32754 -12.24273 -12.20214 -11.98243 -11.78620 -11.64367 -11.55706 -11.42623 -11.22368 -11.10414 -11.06653 -10.89288 -10.69115 -10.56904 -10.35986 -10.09824 -9.96792 -9.60498 -9.37495 -8.86226 -8.13619 -6.98741 -5.86255 -3.19461 -0.22317 2.37524 2.79168 3.30075 3.34987 3.39622 3.40588 3.42865 3.69757 4.21775 4.23971 4.34346 4.37334 4.46930 4.55674 4.75675 4.93824 4.98453 5.10644 5.24260 5.28202 5.32314 5.36303 5.46501 5.55372 5.73730 5.82795 5.83285 5.90556 5.96835 6.01668 6.12800 6.29881 6.38689 6.45618 6.73329 6.83125 7.02157 7.07192 7.13227 7.43269 7.85409 7.94084 8.44354 8.94809 9.60729 10.46410 11.29782 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.003805 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.347243 B = 7356.635089 C = 7928.482181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.568 5.568 4 C 0.523 3.477 5 O -0.547 6.547 6 C -0.097 4.097 7 H 0.116 0.884 8 C -0.121 4.121 9 C -0.109 4.109 10 C -0.605 4.605 11 S 2.418 3.582 12 O -0.941 6.941 13 O -0.930 6.930 14 C -0.605 4.605 15 C 0.067 3.933 16 C 0.152 3.848 17 N -0.602 5.602 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.098 3.902 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.256 0.744 44 H 0.053 0.947 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 13.834 12.172 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 N -0.297 5.297 4 C 0.309 3.691 5 O -0.426 6.426 6 C -0.119 4.119 7 H 0.134 0.866 8 C -0.159 4.159 9 C -0.148 4.148 10 C -0.734 4.734 11 S 2.600 3.400 12 O -0.938 6.938 13 O -0.927 6.927 14 C -0.734 4.734 15 C -0.039 4.039 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C -0.029 4.029 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.168 13.747 11.811 18.162 hybrid contribution -0.499 -1.228 -0.207 1.342 sum -1.667 12.519 11.604 17.151 Atomic orbital electron populations 1.22042 0.96622 1.01293 1.01221 1.21656 0.93938 0.81272 1.04651 1.47593 1.62605 1.14392 1.05149 1.20059 0.77816 0.87474 0.83743 1.90663 1.51441 1.69770 1.30712 1.21046 0.98733 0.93833 0.98273 0.86644 1.21539 1.03341 0.96326 0.94676 1.21307 0.97394 0.91794 1.04269 1.30260 1.09963 1.08657 1.24539 1.08087 0.75827 0.77781 0.78307 1.93602 1.54434 1.64791 1.81019 1.93611 1.46403 1.85903 1.66760 1.30463 1.09163 1.22370 1.11360 1.23294 0.99417 0.96528 0.84654 1.22674 0.89700 0.94366 0.90668 1.46001 1.06237 1.13126 1.67565 1.18900 0.94569 0.91858 1.29758 0.90334 1.24735 0.95585 0.98513 1.01152 1.69780 1.03634 1.32412 1.50756 0.86253 0.77549 0.82557 0.79719 1.21239 1.21584 1.21043 1.23144 0.96347 0.90427 0.93022 0.91940 0.92464 0.94056 0.85564 0.92030 0.90034 0.88676 0.89169 0.89492 0.84829 0.84830 0.83572 0.84170 0.89242 0.94119 0.89991 0.93439 0.92895 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.01 37.15 0.37 -2.29 16 2 C 0.11 2.01 5.37 -4.04 -0.02 1.99 16 3 N -0.57 -9.59 2.71 -167.90 -0.45 -10.04 16 4 C 0.52 8.02 6.92 -10.99 -0.08 7.94 16 5 O -0.55 -9.80 15.53 5.55 0.09 -9.71 16 6 C -0.10 -1.05 1.51 -91.96 -0.14 -1.19 16 7 H 0.12 1.16 7.09 -51.93 -0.37 0.80 16 8 C -0.12 -1.04 4.32 -27.16 -0.12 -1.16 16 9 C -0.11 -0.69 5.73 -26.93 -0.15 -0.85 16 10 C -0.60 -3.57 6.35 37.17 0.24 -3.33 16 11 S 2.42 22.46 5.31 -107.50 -0.57 21.89 16 12 O -0.94 -11.90 18.10 -57.81 -1.05 -12.95 16 13 O -0.93 -11.56 17.93 -57.81 -1.04 -12.59 16 14 C -0.61 -5.76 5.22 37.18 0.19 -5.57 16 15 C 0.07 1.11 3.16 -70.14 -0.22 0.89 16 16 C 0.15 3.22 6.57 -2.97 -0.02 3.20 16 17 N -0.60 -13.67 2.37 -178.06 -0.42 -14.10 16 18 C -0.22 -5.69 10.00 -15.06 -0.15 -5.84 16 19 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 20 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 21 N -0.92 -25.32 11.38 55.49 0.63 -24.69 16 22 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.10 1.78 7.72 -2.97 -0.02 1.75 16 27 H 0.06 1.12 6.07 -51.93 -0.32 0.81 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.13 2.83 5.12 -51.93 -0.27 2.57 16 31 H 0.06 1.18 7.55 -51.93 -0.39 0.79 16 32 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.54 8.01 -51.93 -0.42 0.13 16 36 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.15 1.52 5.40 -51.93 -0.28 1.24 16 39 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.24 5.15 -51.93 -0.27 0.97 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.95 6.72 -51.93 -0.35 1.60 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.05 0.93 6.19 -51.93 -0.32 0.61 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -33.79 357.10 -9.40 -43.19 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.73 Total: 2.15 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.22 Total: -4.63 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.25 Total: -48.83 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -2.00 Total: -35.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 22.46 SS G_CDS: -0.57 Total: 21.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.79 -9.40 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952392008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.701 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds