Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.57683 * 2 1 4 4 O 1.42098 * 108.57769 * 228.97341 * 2 1 3 5 5 C 1.81395 * 101.92182 * 114.48562 * 2 1 3 6 6 C 1.50702 * 110.43523 * 295.20955 * 5 2 1 7 7 O 1.21283 * 120.00091 * 31.28206 * 6 5 2 8 8 N 1.34780 * 119.99782 * 211.27828 * 6 5 2 9 9 C 1.47019 * 125.65223 * 354.02075 * 8 6 5 10 10 C 1.54322 * 107.40505 * 181.10174 * 9 8 6 11 11 C 1.55167 * 102.94090 * 22.11425 * 10 9 8 12 12 H 1.08997 * 111.00021 * 82.57036 * 11 10 9 13 13 N 1.46496 * 111.00337 * 206.38880 * 11 10 9 14 14 C 1.36940 * 119.99607 * 273.54743 * 13 11 10 15 15 H 1.08005 * 120.00335 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00075 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99410 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00235 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46987 * 90.00084 * 18 16 14 20 20 H 1.48498 * 109.47052 * 209.99739 * 18 16 14 21 21 H 1.48497 * 109.47069 * 329.99830 * 18 16 14 22 22 C 1.47749 * 125.81784 * 173.92735 * 8 6 5 23 23 C 1.54891 * 110.60063 * 57.82468 * 5 2 1 24 24 C 1.54889 * 102.75097 * 156.67416 * 23 5 2 25 25 C 1.54266 * 104.19429 * 322.06195 * 24 23 5 26 26 C 1.53872 * 106.60325 * 23.60799 * 25 24 23 27 27 H 1.09007 * 109.47448 * 310.92797 * 1 2 3 28 28 H 1.08999 * 109.47425 * 70.92694 * 1 2 3 29 29 H 1.09003 * 109.47225 * 190.92847 * 1 2 3 30 30 H 1.09000 * 109.87929 * 61.60422 * 9 8 6 31 31 H 1.08999 * 109.88052 * 300.59713 * 9 8 6 32 32 H 1.08992 * 110.72040 * 140.47432 * 10 9 8 33 33 H 1.08998 * 110.72022 * 263.75445 * 10 9 8 34 34 H 0.97001 * 120.00237 * 93.54738 * 13 11 10 35 35 H 0.97005 * 119.99675 * 180.02562 * 17 16 14 36 36 H 1.09002 * 110.29223 * 37.02501 * 22 8 6 37 37 H 1.09003 * 110.52763 * 274.75698 * 22 8 6 38 38 H 1.09001 * 110.75790 * 274.99491 * 23 5 2 39 39 H 1.09002 * 110.74940 * 38.36438 * 23 5 2 40 40 H 1.08995 * 110.48726 * 203.37979 * 24 23 5 41 41 H 1.08997 * 110.59634 * 80.79451 * 24 23 5 42 42 H 1.09003 * 110.03380 * 264.32366 * 25 24 23 43 43 H 1.09005 * 110.03351 * 142.89130 * 25 24 23 44 44 H 1.08997 * 110.03239 * 240.71755 * 26 25 24 45 45 H 1.08997 * 110.03507 * 119.27915 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6152 6 6 1.7089 0.1623 2.7264 7 8 0.7286 0.8577 2.5636 8 7 2.3691 0.1925 3.9010 9 6 3.4894 -0.6822 4.2770 10 6 3.9057 -0.3068 5.7149 11 6 2.6312 0.3757 6.2786 12 1 1.9164 -0.3658 6.6354 13 7 2.9707 1.3270 7.3396 14 6 3.0957 0.8943 8.6329 15 1 2.9436 -0.1482 8.8706 16 6 3.4169 1.7958 9.6384 17 7 3.6017 3.0663 9.3487 18 14 3.5866 1.2057 11.4026 19 1 4.9932 0.8025 11.6565 20 1 3.2112 2.3031 12.3299 21 1 2.6906 0.0424 11.6238 22 6 2.0913 1.1095 5.0257 23 6 1.5459 -2.1395 1.7370 24 6 2.4219 -2.8243 2.8153 25 6 3.8509 -2.3277 2.5131 26 6 3.7026 -0.9997 1.7501 27 1 -0.3634 0.6733 0.7765 28 1 -0.3634 0.3358 -0.9712 29 1 -0.3634 -1.0090 0.1948 30 1 4.3261 -0.5262 3.5961 31 1 3.1733 -1.7248 4.2429 32 1 4.1520 -1.1989 6.2904 33 1 4.7436 0.3902 5.7042 34 1 3.1070 2.2634 7.1262 35 1 3.8265 3.6962 10.0514 36 1 1.0187 1.2797 5.1186 37 1 2.6141 2.0556 4.8854 38 1 0.5112 -2.0630 2.0713 39 1 1.6085 -2.6764 0.7904 40 1 2.3666 -3.9086 2.7196 41 1 2.1134 -2.5142 3.8136 42 1 4.3766 -3.0562 1.8958 43 1 4.3943 -2.1648 3.4439 44 1 4.1564 -1.0838 0.7626 45 1 4.1739 -0.1924 2.3106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970247510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -25.577170 kcal Electronic energy + Delta-G solvation = -28259.055182 eV Core-core repulsion = 24406.985157 eV Total energy + Delta-G solvation = -3852.070024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.36158 -38.03870 -37.54116 -37.03156 -36.25083 -34.16028 -31.64831 -30.97322 -29.99426 -29.53674 -28.68775 -27.68889 -24.12369 -23.06632 -22.35655 -21.01611 -20.38108 -20.01864 -18.79253 -17.56098 -17.33680 -17.18997 -16.41504 -16.19178 -15.91349 -15.48142 -14.98118 -14.69647 -14.25643 -14.00985 -13.80036 -13.54246 -13.38916 -13.33865 -13.20877 -12.79855 -12.49372 -12.39726 -12.28810 -12.22222 -12.06524 -11.74935 -11.60155 -11.55903 -11.22076 -11.13846 -11.10186 -10.87407 -10.81313 -10.69320 -10.55942 -10.25696 -10.08142 -9.93142 -9.80268 -9.01079 -8.52854 -7.11341 -5.88179 -3.19349 -0.26417 2.30978 2.40100 2.83182 3.33886 3.36523 3.41941 3.43954 3.69337 3.90513 4.06318 4.11978 4.48729 4.61380 4.67222 4.76602 4.79618 4.85354 4.98274 4.99924 5.09030 5.15863 5.20600 5.29735 5.38564 5.44098 5.47993 5.61338 5.64956 5.66036 5.70856 5.72769 5.85735 5.96715 6.07702 6.11303 6.26721 6.39712 6.50324 6.82176 7.47445 7.58926 7.91587 8.28894 9.40647 9.93986 10.28655 11.33877 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.003146 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.808288 B = 8897.350493 C = 9401.434480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.444 3.556 3 O -0.927 6.927 4 O -0.937 6.937 5 C -0.575 4.575 6 C 0.567 3.433 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.039 3.961 10 C -0.160 4.160 11 C 0.173 3.827 12 H 0.063 0.937 13 N -0.715 5.715 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.096 3.904 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.115 4.115 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -13.148 -18.046 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.625 3.375 3 O -0.924 6.924 4 O -0.934 6.934 5 C -0.664 4.664 6 C 0.353 3.647 7 O -0.424 6.424 8 N -0.321 5.321 9 C -0.082 4.082 10 C -0.201 4.201 11 C 0.061 3.939 12 H 0.080 0.920 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.027 4.027 23 C -0.134 4.134 24 C -0.167 4.167 25 C -0.178 4.178 26 C -0.153 4.153 27 H 0.173 0.827 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.101 0.899 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.756 -12.539 -18.635 22.629 hybrid contribution -0.248 -0.200 1.515 1.548 sum -3.004 -12.739 -17.119 21.550 Atomic orbital electron populations 1.30291 1.24688 1.12383 1.12445 1.07341 0.79195 0.75364 0.75635 1.93602 1.79668 1.33580 1.85550 1.93584 1.80214 1.67618 1.51962 1.31356 1.06848 1.08513 1.19716 1.18524 0.82642 0.81654 0.81877 1.90703 1.26057 1.44608 1.81057 1.48260 1.33627 1.36140 1.14092 1.24291 0.89601 0.96230 0.98090 1.23517 1.01730 1.02041 0.92860 1.21269 0.93324 0.92159 0.87141 0.91957 1.42252 1.83265 1.07027 1.02990 1.19183 1.40886 0.93822 0.83842 0.91002 1.24776 1.02093 0.95439 0.98218 1.69663 1.53885 1.01665 1.32401 0.86170 0.77767 0.77466 0.84614 1.21607 1.21690 1.20686 1.22726 1.01929 0.92986 0.85030 1.22472 1.00038 0.88798 1.02061 1.22685 0.94298 1.00662 0.99086 1.22855 0.97734 0.95478 1.01685 1.22522 0.89056 1.00672 1.03009 0.82744 0.85576 0.85611 0.89395 0.87722 0.90703 0.90568 0.77892 0.93285 0.90163 0.90766 0.89253 0.88565 0.90220 0.89444 0.90823 0.88398 0.89945 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.65 9.86 101.05 1.00 -4.65 16 2 S 2.44 27.82 4.16 -107.50 -0.45 27.38 16 3 O -0.93 -14.38 17.91 -57.83 -1.04 -15.42 16 4 O -0.94 -11.72 17.48 -57.83 -1.01 -12.73 16 5 C -0.57 -6.01 0.69 -90.11 -0.06 -6.08 16 6 C 0.57 7.78 6.33 -10.98 -0.07 7.72 16 7 O -0.54 -8.71 14.10 5.55 0.08 -8.64 16 8 N -0.59 -8.21 3.22 -170.26 -0.55 -8.76 16 9 C 0.04 0.45 3.56 -3.07 -0.01 0.44 16 10 C -0.16 -2.37 6.65 -24.89 -0.17 -2.54 16 11 C 0.17 3.12 3.68 -65.78 -0.24 2.88 16 12 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 13 N -0.71 -16.73 5.28 -51.34 -0.27 -17.00 16 14 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 18 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.10 1.59 6.58 -2.35 -0.02 1.58 16 23 C -0.10 -0.72 4.94 -24.74 -0.12 -0.85 16 24 C -0.13 -0.92 5.96 -25.07 -0.15 -1.07 16 25 C -0.14 -1.01 5.63 -25.61 -0.14 -1.15 16 26 C -0.11 -1.06 5.20 -25.61 -0.13 -1.20 16 27 H 0.15 1.60 6.01 -51.92 -0.31 1.29 16 28 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.13 0.75 7.38 -51.92 -0.38 0.37 16 30 H 0.09 0.89 3.90 -51.93 -0.20 0.68 16 31 H 0.11 0.99 2.63 -51.93 -0.14 0.85 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.39 9.74 7.71 -40.82 -0.31 9.42 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.38 7.99 -51.93 -0.42 0.97 16 37 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 38 H 0.09 0.61 7.87 -51.93 -0.41 0.20 16 39 H 0.10 0.57 7.79 -51.93 -0.40 0.17 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.71 5.88 -51.93 -0.31 0.41 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.67 4.93 -51.93 -0.26 0.41 16 44 H 0.08 0.70 7.55 -51.93 -0.39 0.30 16 45 H 0.10 1.04 5.07 -51.93 -0.26 0.77 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -34.04 348.33 -8.94 -42.97 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.29 Total: 8.68 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.36 Total: -11.85 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.09 Total: -52.10 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.97 Total: -36.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 27.82 SS G_CDS: -0.45 Total: 27.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.04 -8.94 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970247510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.397 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds