Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99748 * 2 1 4 4 H 1.08001 * 119.99867 * 201.68545 * 3 2 1 5 5 C 1.38814 * 119.99956 * 21.69649 * 3 2 1 6 6 N 1.31618 * 120.00030 * 13.69026 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 193.69114 * 5 3 2 8 8 H 1.48503 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47142 * 119.99578 * 7 5 3 10 10 H 1.48505 * 109.47145 * 239.99740 * 7 5 3 11 11 C 1.46500 * 119.99814 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.87984 * 176.11667 * 11 2 1 13 13 C 1.55152 * 111.00586 * 52.19538 * 11 2 1 14 14 C 1.54324 * 102.94420 * 206.42125 * 13 11 2 15 15 N 1.47028 * 107.26583 * 22.19012 * 14 13 11 16 16 C 1.34784 * 125.64409 * 181.09444 * 15 14 13 17 17 O 1.21286 * 119.99636 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00179 * 359.96167 * 16 15 14 19 19 H 1.09004 * 109.54855 * 334.99952 * 18 16 15 20 20 C 1.53031 * 109.55001 * 214.80620 * 18 16 15 21 21 C 1.52589 * 109.98683 * 176.49637 * 20 18 16 22 22 C 1.52585 * 110.64591 * 69.98672 * 21 20 18 23 23 C 1.53031 * 109.98285 * 290.01635 * 22 21 20 24 24 S 1.81666 * 109.55189 * 95.19150 * 18 16 15 25 25 O 1.42105 * 108.66204 * 288.48642 * 24 18 16 26 26 O 1.42106 * 108.66292 * 59.82127 * 24 18 16 27 27 C 1.47420 * 108.70433 * 1.06355 * 15 14 13 28 28 H 1.09005 * 109.47206 * 274.47830 * 1 2 3 29 29 H 1.09003 * 109.47304 * 154.47873 * 1 2 3 30 30 H 1.09000 * 109.47711 * 34.47690 * 1 2 3 31 31 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 32 32 H 1.09000 * 110.72064 * 324.78653 * 13 11 2 33 33 H 1.09000 * 110.72126 * 88.05900 * 13 11 2 34 34 H 1.08994 * 109.88220 * 262.77714 * 14 13 11 35 35 H 1.08992 * 109.88622 * 141.60658 * 14 13 11 36 36 H 1.08996 * 109.38596 * 296.65425 * 20 18 16 37 37 H 1.09007 * 109.38685 * 56.44556 * 20 18 16 38 38 H 1.09002 * 109.24106 * 190.28619 * 21 20 18 39 39 H 1.09006 * 109.24191 * 309.68344 * 21 20 18 40 40 H 1.08997 * 109.38187 * 50.17017 * 22 21 20 41 41 H 1.08997 * 109.38515 * 169.85621 * 22 21 20 42 42 H 1.09007 * 109.54857 * 183.49994 * 23 22 21 43 43 H 1.09004 * 109.55158 * 303.68980 * 23 22 21 44 44 H 1.09002 * 110.36388 * 217.03299 * 27 15 14 45 45 H 1.08992 * 110.36860 * 94.71069 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1723 1.2191 -0.3456 5 6 1.5292 2.3455 0.4444 6 7 0.3964 2.2720 1.1105 7 14 2.3022 4.0102 0.0971 8 1 3.5643 3.8212 -0.6622 9 1 1.3617 4.8355 -0.7026 10 1 2.5954 4.6973 1.3806 11 6 2.1974 -1.2688 -0.0006 12 1 3.2716 -1.0972 -0.0695 13 6 1.7066 -2.1938 -1.1454 14 6 2.0243 -3.6056 -0.6093 15 7 2.1177 -3.5057 0.8546 16 6 2.4025 -4.5207 1.6946 17 8 2.4540 -4.3222 2.8900 18 6 2.6566 -5.9020 1.1485 19 1 2.1585 -6.0107 0.1850 20 6 2.1143 -6.9469 2.1261 21 6 2.2882 -8.3464 1.5433 22 6 3.7629 -8.7370 1.5129 23 6 4.5024 -7.9061 0.4619 24 16 4.4436 -6.1543 0.9407 25 8 4.8898 -5.3664 -0.1545 26 8 5.0736 -6.0090 2.2062 27 6 1.8489 -2.1116 1.2515 28 1 -0.3634 0.0802 1.0246 29 1 -0.3634 -0.9274 -0.4428 30 1 -0.3634 0.8471 -0.5817 31 1 -0.0373 3.0823 1.4208 32 1 0.6351 -2.0741 -1.3053 33 1 2.2591 -1.9968 -2.0641 34 1 2.9731 -3.9527 -1.0184 35 1 1.2257 -4.2947 -0.8836 36 1 2.6578 -6.8773 3.0683 37 1 1.0553 -6.7602 2.3047 38 1 1.7398 -9.0615 2.1563 39 1 1.8907 -8.3648 0.5285 40 1 4.2050 -8.5573 2.4928 41 1 3.8519 -9.7949 1.2660 42 1 5.5405 -8.2334 0.4024 43 1 4.0232 -8.0352 -0.5086 44 1 2.4847 -1.8266 2.0897 45 1 0.7979 -1.9872 1.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971674347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = -73.649205 kcal Electronic energy + Delta-G solvation = -27703.575152 eV Core-core repulsion = 23849.420568 eV Total energy + Delta-G solvation = -3854.154584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.07872 -38.02383 -37.27998 -36.79630 -36.23939 -34.86497 -32.51684 -31.56438 -29.81181 -28.80048 -27.57720 -26.06910 -24.69300 -23.20847 -22.41376 -21.40745 -19.76108 -19.34207 -18.83802 -17.43821 -17.30556 -16.90577 -16.78288 -15.85045 -15.70836 -15.63666 -14.84583 -14.59511 -14.43637 -14.07635 -13.89293 -13.47263 -13.40223 -13.22552 -12.79198 -12.48351 -12.45631 -12.35572 -12.24984 -12.15537 -12.05734 -11.90885 -11.79587 -11.50391 -11.35417 -10.94533 -10.93315 -10.81828 -10.57212 -10.53453 -10.43767 -10.24310 -9.92616 -9.83474 -9.74482 -8.61647 -8.41445 -6.84278 -5.77422 -3.23490 -0.42044 2.28587 2.59747 2.84657 3.37394 3.43741 3.45300 3.47340 3.58357 4.03236 4.08752 4.14464 4.31901 4.45814 4.48598 4.58890 4.79505 4.95401 4.97438 5.05653 5.22132 5.29480 5.33699 5.37819 5.49909 5.52557 5.59461 5.61202 5.74467 5.81651 5.89984 5.99787 6.25818 6.34831 6.43604 6.58530 6.76530 6.86196 7.31918 7.61172 7.67829 7.78597 8.11112 8.33492 9.17670 9.79730 10.27625 11.27442 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.003009 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.205600 B = 9302.740882 C = 9533.283076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.260 4.260 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.171 3.829 12 H 0.081 0.919 13 C -0.152 4.152 14 C 0.088 3.912 15 N -0.604 5.604 16 C 0.538 3.462 17 O -0.517 6.517 18 C -0.595 4.595 19 H 0.152 0.848 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.113 4.113 23 C -0.603 4.603 24 S 2.422 3.578 25 O -0.925 6.925 26 O -0.913 6.913 27 C 0.084 3.916 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.046 0.954 31 H 0.253 0.747 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -25.079 -4.351 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.100 0.900 13 C -0.192 4.192 14 C -0.036 4.036 15 N -0.338 5.338 16 C 0.322 3.678 17 O -0.393 6.393 18 C -0.705 4.705 19 H 0.170 0.830 20 C -0.132 4.132 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.733 4.733 24 S 2.600 3.400 25 O -0.922 6.922 26 O -0.910 6.910 27 C -0.040 4.040 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.449 -24.211 -3.493 24.703 hybrid contribution -0.469 0.332 -0.437 0.722 sum 2.980 -23.879 -3.930 24.383 Atomic orbital electron populations 1.20847 0.82372 0.95818 0.99562 1.43892 1.01936 0.99845 1.84703 1.19306 0.97922 0.84842 1.36911 0.90959 1.25035 0.97802 0.98642 0.98000 1.70091 1.18845 1.27094 1.38868 0.86141 0.78571 0.83985 0.77575 1.20198 1.21585 1.21675 1.21497 0.96704 0.85789 0.89965 0.90049 1.23178 1.02922 0.92609 1.00447 1.22301 1.01548 0.99866 0.79838 1.48537 1.67589 1.10033 1.07623 1.18729 0.79371 0.83412 0.86262 1.90769 1.51273 1.82979 1.14281 1.30446 1.28147 1.02097 1.09788 0.83036 1.21226 1.04437 0.90112 0.97394 1.21740 0.96257 0.96758 1.02949 1.21331 0.94735 1.01013 0.98036 1.30282 1.10326 1.23081 1.09576 1.08338 0.77010 0.78550 0.76125 1.93621 1.77809 1.66304 1.54502 1.93627 1.70992 1.84912 1.41511 1.23305 1.01665 0.77779 1.01271 0.95111 0.97872 0.93521 0.93668 0.90155 0.90151 0.90271 0.91831 0.88552 0.89139 0.89178 0.90574 0.89426 0.89251 0.84459 0.84650 0.90532 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 7.87 59.85 0.47 4.23 16 2 N -0.58 -14.23 2.96 -171.04 -0.51 -14.73 16 3 C -0.26 -7.05 9.63 -15.06 -0.15 -7.19 16 4 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 5 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 6 N -0.90 -26.09 10.67 55.49 0.59 -25.50 16 7 Si 0.91 21.75 29.58 -169.99 -5.03 16.73 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.17 3.47 3.54 -65.79 -0.23 3.24 16 12 H 0.08 1.69 7.93 -51.93 -0.41 1.28 16 13 C -0.15 -2.40 6.48 -24.90 -0.16 -2.57 16 14 C 0.09 1.19 6.04 -3.06 -0.02 1.17 16 15 N -0.60 -10.10 3.33 -170.53 -0.57 -10.67 16 16 C 0.54 8.81 6.85 -10.98 -0.08 8.73 16 17 O -0.52 -10.40 16.60 5.55 0.09 -10.30 16 18 C -0.60 -6.39 2.47 -27.87 -0.07 -6.46 16 19 H 0.15 1.08 6.97 -51.92 -0.36 0.72 16 20 C -0.09 -0.81 4.62 -26.93 -0.12 -0.93 16 21 C -0.14 -0.69 5.63 -27.15 -0.15 -0.84 16 22 C -0.11 -0.56 5.73 -26.93 -0.15 -0.72 16 23 C -0.60 -3.41 6.34 37.17 0.24 -3.17 16 24 S 2.42 27.13 4.67 -107.50 -0.50 26.62 16 25 O -0.93 -12.87 17.33 -57.81 -1.00 -13.87 16 26 O -0.91 -13.89 17.94 -57.81 -1.04 -14.93 16 27 C 0.08 1.66 6.51 -2.53 -0.02 1.65 16 28 H 0.03 0.80 7.41 -51.93 -0.38 0.42 16 29 H 0.00 0.06 5.96 -51.93 -0.31 -0.25 16 30 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.08 1.28 5.97 -51.93 -0.31 0.97 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.01 7.35 -51.93 -0.38 0.62 16 35 H 0.06 0.67 7.86 -51.93 -0.41 0.26 16 36 H 0.10 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 40 H 0.09 0.49 8.02 -51.93 -0.42 0.08 16 41 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 45 H 0.07 1.50 7.31 -51.93 -0.38 1.12 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -36.24 362.19 -10.10 -46.34 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -7.07 Total: -2.30 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.53 Total: -2.84 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.48 Total: -50.90 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.95 Total: -39.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 27.13 SS G_CDS: -0.50 Total: 26.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.24 -10.10 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971674347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.308 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds