Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36931 * 119.99910 * 2 1 4 4 H 1.08005 * 120.00014 * 203.26394 * 3 2 1 5 5 C 1.38806 * 120.00492 * 23.26166 * 3 2 1 6 6 N 1.31625 * 119.99769 * 13.81385 * 5 3 2 7 7 Si 1.86800 * 120.00420 * 193.81588 * 5 3 2 8 8 H 1.48504 * 109.46718 * 59.99926 * 7 5 3 9 9 H 1.48498 * 109.47324 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47053 * 300.00053 * 7 5 3 11 11 C 1.46502 * 119.99744 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.88589 * 183.88406 * 11 2 1 13 13 C 1.55158 * 111.00121 * 307.79881 * 11 2 1 14 14 C 1.54333 * 103.02030 * 153.38473 * 13 11 2 15 15 N 1.47021 * 107.26583 * 338.13977 * 14 13 11 16 16 C 1.34770 * 125.64772 * 178.84574 * 15 14 13 17 17 O 1.21285 * 119.99727 * 179.69360 * 16 15 14 18 18 C 1.50701 * 120.00106 * 359.69642 * 16 15 14 19 19 H 1.08997 * 109.54987 * 325.19244 * 18 16 15 20 20 C 1.53041 * 109.62851 * 85.42999 * 18 16 15 21 21 C 1.52587 * 109.98414 * 183.54881 * 20 18 16 22 22 C 1.52589 * 110.64616 * 290.01427 * 21 20 18 23 23 C 1.53030 * 109.98302 * 69.98894 * 22 21 20 24 24 S 1.81668 * 109.54970 * 204.99479 * 18 16 15 25 25 O 1.42109 * 108.66046 * 71.42168 * 24 18 16 26 26 O 1.42097 * 108.75349 * 300.11377 * 24 18 16 27 27 C 1.47426 * 108.70291 * 358.58574 * 15 14 13 28 28 H 1.08997 * 109.46758 * 275.16269 * 1 2 3 29 29 H 1.09002 * 109.46670 * 35.15766 * 1 2 3 30 30 H 1.09002 * 109.47095 * 155.15679 * 1 2 3 31 31 H 0.96997 * 119.99760 * 180.02562 * 6 5 3 32 32 H 1.09005 * 110.72173 * 271.94711 * 13 11 2 33 33 H 1.09000 * 110.72365 * 35.21466 * 13 11 2 34 34 H 1.09000 * 109.99096 * 218.66262 * 14 13 11 35 35 H 1.09000 * 109.78075 * 97.49910 * 14 13 11 36 36 H 1.09002 * 109.38209 * 63.39609 * 20 18 16 37 37 H 1.08995 * 109.38377 * 303.71276 * 20 18 16 38 38 H 1.09003 * 109.23859 * 169.71693 * 21 20 18 39 39 H 1.09001 * 109.24109 * 50.31764 * 21 20 18 40 40 H 1.09004 * 109.38437 * 190.14314 * 22 21 20 41 41 H 1.09002 * 109.38679 * 309.83137 * 22 21 20 42 42 H 1.08999 * 109.55343 * 56.20790 * 23 22 21 43 43 H 1.09008 * 109.54910 * 176.49881 * 23 22 21 44 44 H 1.09004 * 110.36730 * 143.18836 * 27 15 14 45 45 H 1.08994 * 110.36917 * 265.51652 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3694 5 6 1.5404 2.3392 0.4747 6 7 0.4249 2.2563 1.1685 7 14 2.3034 4.0088 0.1291 8 1 2.3822 4.2227 -1.3384 9 1 1.4654 5.0720 0.7394 10 1 3.6688 4.0591 0.7107 11 6 2.1975 -1.2688 -0.0006 12 1 3.2717 -1.0974 0.0685 13 6 1.7067 -2.1947 1.1436 14 6 2.0189 -3.6073 0.6059 15 7 2.1175 -3.5052 -0.8575 16 6 2.4010 -4.5196 -1.6982 17 8 2.4513 -4.3205 -2.8936 18 6 2.6553 -5.9014 -1.1532 19 1 3.1658 -5.8265 -0.1931 20 6 1.3245 -6.6347 -0.9697 21 6 1.5654 -8.0017 -0.3360 22 6 2.2612 -8.9363 -1.3212 23 6 3.7039 -8.4784 -1.5467 24 16 3.6886 -6.8346 -2.3201 25 8 5.0063 -6.3035 -2.2857 26 8 3.0071 -6.9235 -3.5638 27 6 1.8489 -2.1107 -1.2533 28 1 -0.3633 0.0925 1.0235 29 1 -0.3633 0.8402 -0.5918 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0011 3.0622 1.4999 32 1 2.2592 -1.9984 2.0625 33 1 0.6352 -2.0751 1.3037 34 1 1.2173 -4.2946 0.8764 35 1 2.9653 -3.9579 1.0177 36 1 0.8465 -6.7651 -1.9406 37 1 0.6732 -6.0460 -0.3237 38 1 0.6091 -8.4355 -0.0436 39 1 2.1906 -7.8823 0.5488 40 1 2.2619 -9.9497 -0.9197 41 1 1.7256 -8.9252 -2.2705 42 1 4.2239 -8.4266 -0.5901 43 1 4.2127 -9.1852 -2.2022 44 1 2.4847 -1.8250 -2.0913 45 1 0.7979 -1.9860 -1.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971674348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = -75.827139 kcal Electronic energy + Delta-G solvation = -27524.573874 eV Core-core repulsion = 23670.324847 eV Total energy + Delta-G solvation = -3854.249026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.18136 -37.90816 -37.40348 -36.82919 -36.10806 -34.90805 -32.62287 -31.52229 -29.88523 -28.75781 -27.63193 -26.09820 -24.68594 -23.41565 -22.39438 -21.48021 -19.80850 -19.40257 -18.81863 -17.52092 -17.18701 -16.98913 -16.47744 -15.99632 -15.76386 -15.47071 -14.94939 -14.71907 -14.45125 -14.17452 -13.85277 -13.54013 -13.45030 -13.27548 -12.84224 -12.55201 -12.53459 -12.28632 -12.16625 -12.15553 -12.07910 -11.94177 -11.79033 -11.44273 -11.41839 -10.99431 -10.91995 -10.81696 -10.59363 -10.54946 -10.50824 -10.31760 -10.01116 -9.93575 -9.84532 -8.65158 -8.50958 -6.86294 -5.81096 -3.28916 -0.31863 2.37972 2.48175 2.83897 3.36326 3.41725 3.43595 3.54000 3.64760 4.05798 4.08911 4.16217 4.35613 4.42946 4.44370 4.51565 4.76480 4.90431 4.93726 5.05145 5.15752 5.23747 5.30282 5.30845 5.40883 5.46385 5.50143 5.54024 5.65920 5.70902 5.82319 5.92525 6.19975 6.28213 6.37104 6.54091 6.69260 6.79426 7.27473 7.52595 7.63091 7.74199 8.00550 8.30512 9.13820 9.75805 10.24055 11.23448 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027428 B = 0.002843 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.596057 B = 9847.517946 C =10317.563719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.151 4.151 14 C 0.098 3.902 15 N -0.598 5.598 16 C 0.551 3.449 17 O -0.529 6.529 18 C -0.602 4.602 19 H 0.153 0.847 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.112 4.112 23 C -0.611 4.611 24 S 2.442 3.558 25 O -0.932 6.932 26 O -0.907 6.907 27 C 0.082 3.918 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.254 0.746 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 -24.313 1.524 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.191 4.191 14 C -0.025 4.025 15 N -0.331 5.331 16 C 0.336 3.664 17 O -0.406 6.406 18 C -0.711 4.711 19 H 0.170 0.830 20 C -0.138 4.138 21 C -0.175 4.175 22 C -0.150 4.150 23 C -0.740 4.740 24 S 2.619 3.381 25 O -0.929 6.929 26 O -0.904 6.904 27 C -0.042 4.042 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.082 -23.755 0.163 23.847 hybrid contribution 0.031 0.653 0.936 1.142 sum 2.113 -23.102 1.099 23.224 Atomic orbital electron populations 1.20822 0.82432 0.95646 0.99678 1.43800 1.01849 0.99806 1.84903 1.19183 0.98760 0.85288 1.36060 0.91222 1.25023 0.97890 0.98638 0.97671 1.70056 1.20004 1.27577 1.37217 0.86298 0.78424 0.83476 0.78118 1.20922 1.21603 1.20823 1.21421 0.96633 0.85891 0.89847 0.90128 1.23235 1.02996 0.92297 1.00586 1.22179 1.00779 0.99847 0.79721 1.48331 1.67592 1.09590 1.07600 1.18705 0.78114 0.83692 0.85902 1.90879 1.52462 1.83237 1.14066 1.30654 1.14082 1.06744 1.19629 0.82965 1.21284 0.92867 0.95255 1.04349 1.21716 1.02843 0.94040 0.98929 1.21318 0.90862 1.01255 1.01608 1.30370 1.05803 1.23206 1.14596 1.07785 0.75626 0.77855 0.76786 1.93595 1.35212 1.77485 1.86637 1.93591 1.75225 1.85229 1.36328 1.23179 1.01677 0.78408 1.00968 0.94716 0.93925 0.98009 0.93572 0.90238 0.90350 0.91689 0.91619 0.88970 0.88952 0.89133 0.90396 0.89308 0.89460 0.84808 0.84533 0.90482 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.69 7.57 59.85 0.45 4.15 16 2 N -0.58 -13.89 2.96 -171.02 -0.51 -14.40 16 3 C -0.26 -7.01 9.60 -15.06 -0.14 -7.16 16 4 H 0.07 1.82 7.87 -52.48 -0.41 1.41 16 5 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 6 N -0.90 -25.46 10.77 55.49 0.60 -24.86 16 7 Si 0.91 21.46 29.58 -169.99 -5.03 16.43 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.17 3.34 3.54 -65.78 -0.23 3.10 16 12 H 0.08 1.58 7.96 -51.93 -0.41 1.17 16 13 C -0.15 -2.35 6.50 -24.89 -0.16 -2.51 16 14 C 0.10 1.20 6.23 -3.06 -0.02 1.18 16 15 N -0.60 -9.21 3.33 -170.52 -0.57 -9.78 16 16 C 0.55 8.64 6.99 -10.99 -0.08 8.56 16 17 O -0.53 -10.55 15.74 -9.47 -0.15 -10.70 16 18 C -0.60 -6.21 2.31 -27.86 -0.06 -6.27 16 19 H 0.15 1.05 7.25 -51.93 -0.38 0.68 16 20 C -0.10 -0.75 5.00 -26.92 -0.13 -0.88 16 21 C -0.14 -0.60 5.63 -27.15 -0.15 -0.76 16 22 C -0.11 -0.53 5.73 -26.93 -0.15 -0.68 16 23 C -0.61 -3.46 6.35 37.17 0.24 -3.23 16 24 S 2.44 27.95 4.31 -107.50 -0.46 27.48 16 25 O -0.93 -14.10 18.10 -57.82 -1.05 -15.15 16 26 O -0.91 -13.77 17.08 -64.31 -1.10 -14.87 16 27 C 0.08 1.49 6.47 -2.53 -0.02 1.47 16 28 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 29 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 30 H 0.00 0.03 6.38 -51.93 -0.33 -0.30 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.29 6.99 -51.93 -0.36 0.93 16 34 H 0.06 0.64 7.36 -51.93 -0.38 0.25 16 35 H 0.07 0.67 7.79 -51.93 -0.40 0.26 16 36 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 37 H 0.09 0.65 7.36 -51.93 -0.38 0.27 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.45 8.02 -51.93 -0.42 0.04 16 42 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.14 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 45 H 0.07 1.37 6.42 -51.93 -0.33 1.03 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -36.34 361.44 -10.45 -46.80 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -7.08 Total: -3.48 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.56 Total: -2.93 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.47 Total: -49.04 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -2.29 Total: -40.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 27.95 SS G_CDS: -0.46 Total: 27.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.34 -10.45 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971674348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.032 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds