Wall clock time and date at job start Tue Mar 31 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00160 * 2 1 4 4 H 1.07994 * 119.99897 * 203.50396 * 3 2 1 5 5 C 1.38811 * 119.99840 * 23.50393 * 3 2 1 6 6 N 1.31624 * 120.00352 * 15.22441 * 5 3 2 7 7 Si 1.86801 * 119.99717 * 195.22935 * 5 3 2 8 8 H 1.48498 * 109.47064 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47356 * 120.00191 * 7 5 3 10 10 H 1.48501 * 109.47188 * 239.99945 * 7 5 3 11 11 C 1.46504 * 119.99573 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.77342 * 178.21561 * 11 2 1 13 13 C 1.55156 * 110.72241 * 301.45190 * 11 2 1 14 14 C 1.54909 * 101.57983 * 153.86775 * 13 11 2 15 15 N 1.47426 * 104.83136 * 322.99110 * 14 13 11 16 16 C 1.34782 * 125.64475 * 204.09286 * 15 14 13 17 17 O 1.21287 * 119.99557 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00318 * 0.02562 * 16 15 14 19 19 C 1.52992 * 109.47008 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.85263 * 51.57644 * 19 18 16 21 21 C 1.55046 * 110.78916 * 174.99947 * 19 18 16 22 22 C 1.53871 * 106.62532 * 160.70427 * 21 19 18 23 23 C 1.54166 * 108.59694 * 312.88725 * 22 21 19 24 24 S 1.82591 * 105.23853 * 27.88058 * 23 22 21 25 25 O 1.42095 * 109.37187 * 244.49305 * 24 23 22 26 26 O 1.42099 * 109.48086 * 111.30665 * 24 23 22 27 27 C 1.47014 * 108.70331 * 24.35991 * 15 14 13 28 28 H 1.09005 * 109.47347 * 275.21871 * 1 2 3 29 29 H 1.08997 * 109.47136 * 35.21514 * 1 2 3 30 30 H 1.08999 * 109.47263 * 155.21718 * 1 2 3 31 31 H 0.96996 * 120.00391 * 179.97438 * 6 5 3 32 32 H 1.09001 * 111.00279 * 35.79582 * 13 11 2 33 33 H 1.09001 * 111.00508 * 271.94266 * 13 11 2 34 34 H 1.09008 * 110.36456 * 204.15599 * 14 13 11 35 35 H 1.08993 * 110.36847 * 81.83314 * 14 13 11 36 36 H 1.08999 * 109.46752 * 60.00047 * 18 16 15 37 37 H 1.09004 * 109.46612 * 300.00193 * 18 16 15 38 38 H 1.09001 * 110.03055 * 41.41493 * 21 19 18 39 39 H 1.09000 * 110.06888 * 280.01977 * 21 19 18 40 40 H 1.09003 * 109.64672 * 72.67460 * 22 21 19 41 41 H 1.09007 * 109.64882 * 193.10141 * 22 21 19 42 42 H 1.08995 * 110.32301 * 146.74881 * 23 22 21 43 43 H 1.09004 * 110.31847 * 268.94028 * 23 22 21 44 44 H 1.08998 * 109.88326 * 118.13323 * 27 15 14 45 45 H 1.09003 * 109.88377 * 239.29308 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1625 1.2246 -0.3730 5 6 1.5421 2.3382 0.4794 6 7 0.4443 2.2521 1.2006 7 14 2.2822 4.0110 0.1010 8 1 3.5066 3.8361 -0.7208 9 1 1.2959 4.8309 -0.6475 10 1 2.6328 4.6960 1.3712 11 6 2.1975 -1.2688 0.0006 12 1 3.2729 -1.0944 -0.0312 13 6 1.8161 -2.1223 1.2389 14 6 2.1008 -3.5566 0.7277 15 7 1.6924 -3.5403 -0.6888 16 6 1.3251 -4.6162 -1.4128 17 8 1.0075 -4.4847 -2.5759 18 6 1.3090 -5.9825 -0.7771 19 6 0.8591 -7.0194 -1.8082 20 1 1.4455 -6.9364 -2.7232 21 6 0.9512 -8.4525 -1.2237 22 6 0.0505 -9.3430 -2.0974 23 6 -1.3029 -8.6313 -2.2934 24 16 -0.9306 -6.8484 -2.1647 25 8 -1.5884 -6.3106 -1.0257 26 8 -1.1012 -6.2357 -3.4354 27 6 1.7583 -2.1571 -1.1826 28 1 -0.3634 0.0935 1.0234 29 1 -0.3633 0.8396 -0.5926 30 1 -0.3634 -0.9330 -0.4308 31 1 0.0199 3.0572 1.5359 32 1 0.7625 -1.9987 1.4892 33 1 2.4498 -1.8785 2.0916 34 1 1.5085 -4.2825 1.2849 35 1 3.1628 -3.7862 0.8137 36 1 0.6171 -5.9832 0.0652 37 1 2.3102 -6.2312 -0.4251 38 1 0.5958 -8.4591 -0.1933 39 1 1.9808 -8.8080 -1.2653 40 1 0.5235 -9.5042 -3.0661 41 1 -0.1077 -10.3015 -1.6029 42 1 -1.7121 -8.8605 -3.2773 43 1 -2.0033 -8.9283 -1.5128 44 1 2.4854 -2.0866 -1.9916 45 1 0.7763 -1.8423 -1.5356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972009564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:02 Heat of formation + Delta-G solvation = -74.508014 kcal Electronic energy + Delta-G solvation = -27257.471923 eV Core-core repulsion = 23403.280099 eV Total energy + Delta-G solvation = -3854.191825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.97022 -37.77085 -37.11442 -36.77866 -35.96364 -34.79893 -32.67625 -31.55804 -29.81859 -28.44330 -27.21040 -26.02069 -24.69761 -23.12163 -22.29319 -21.71156 -19.41554 -19.11827 -18.70782 -17.49279 -17.02281 -16.96807 -16.55585 -16.07289 -15.63967 -15.37734 -14.88564 -14.62498 -14.29445 -14.05724 -13.84890 -13.51187 -13.32118 -13.07802 -12.58520 -12.54462 -12.43170 -12.26497 -12.17372 -12.11275 -12.01387 -11.94036 -11.69949 -11.41390 -11.35515 -10.99388 -10.82313 -10.78228 -10.56686 -10.46066 -10.31256 -10.22125 -9.89156 -9.86593 -9.72988 -8.57815 -8.37216 -6.79860 -5.75589 -3.23032 -0.12510 2.42402 2.66994 3.05023 3.37536 3.42413 3.45385 3.47216 3.75862 4.02713 4.12750 4.23245 4.36807 4.47417 4.51411 4.65799 4.77741 4.95802 5.03136 5.12352 5.20446 5.27893 5.31358 5.35326 5.37818 5.40662 5.53238 5.54931 5.58115 5.77193 5.89817 6.00971 6.30712 6.39730 6.53398 6.63793 6.83347 6.88567 7.35250 7.68426 7.73806 7.79143 8.21251 8.36346 9.18948 9.81944 10.31245 11.28961 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029090 B = 0.002694 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.282732 B =10391.103582 C =10665.949054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.585 5.585 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.095 3.905 15 N -0.606 5.606 16 C 0.508 3.492 17 O -0.540 6.540 18 C -0.118 4.118 19 C -0.535 4.535 20 H 0.152 0.848 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.611 4.611 24 S 2.390 3.610 25 O -0.933 6.933 26 O -0.915 6.915 27 C 0.083 3.917 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.005 0.995 31 H 0.253 0.747 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.063 0.937 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 -26.380 -1.525 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.028 4.028 15 N -0.339 5.339 16 C 0.295 3.705 17 O -0.418 6.418 18 C -0.159 4.159 19 C -0.645 4.645 20 H 0.170 0.830 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.739 4.739 24 S 2.571 3.429 25 O -0.930 6.930 26 O -0.912 6.912 27 C -0.041 4.041 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.006 -25.385 -2.221 25.501 hybrid contribution 0.767 0.206 0.014 0.794 sum 1.773 -25.179 -2.206 25.338 Atomic orbital electron populations 1.20819 0.82470 0.95825 0.99713 1.43869 1.01849 0.99881 1.84962 1.19231 0.98859 0.85312 1.35654 0.91232 1.25024 0.98075 0.98592 0.97692 1.70087 1.21099 1.27330 1.36047 0.86186 0.78490 0.84249 0.77584 1.20263 1.21555 1.21744 1.21300 0.96331 0.86030 0.90086 0.90290 1.23402 1.03133 0.92322 1.00346 1.22459 0.99447 0.99855 0.81059 1.48442 1.65111 1.07808 1.12502 1.20265 0.78040 0.85640 0.86547 1.90832 1.48858 1.85949 1.16182 1.21336 1.05901 0.90382 0.98249 1.30255 1.25145 1.00886 1.08206 0.82976 1.22353 1.03083 0.90246 1.00151 1.21867 0.91120 1.00056 1.01996 1.30650 1.06193 1.25413 1.11623 1.09313 0.79337 0.78218 0.76062 1.93607 1.71739 1.76076 1.51593 1.93638 1.84258 1.72480 1.40805 1.22831 1.02656 0.79500 0.99073 0.94698 0.94106 0.97681 0.93707 0.90426 0.90211 0.91062 0.91362 0.86951 0.86813 0.89284 0.88182 0.89647 0.88976 0.84536 0.84646 0.91877 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 7.69 59.85 0.46 4.35 16 2 N -0.59 -14.43 2.93 -171.38 -0.50 -14.93 16 3 C -0.26 -7.05 9.59 -15.06 -0.14 -7.19 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.01 0.14 5.05 -17.43 -0.09 0.06 16 6 N -0.90 -26.07 10.87 55.49 0.60 -25.46 16 7 Si 0.91 21.71 29.58 -169.99 -5.03 16.68 16 8 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.42 3.43 -66.09 -0.23 3.19 16 12 H 0.08 1.52 7.94 -51.93 -0.41 1.10 16 13 C -0.15 -2.53 6.65 -24.58 -0.16 -2.69 16 14 C 0.09 1.23 6.69 -2.53 -0.02 1.22 16 15 N -0.61 -9.76 3.33 -170.52 -0.57 -10.32 16 16 C 0.51 8.03 7.67 -10.98 -0.08 7.95 16 17 O -0.54 -10.57 15.05 0.55 0.01 -10.56 16 18 C -0.12 -1.20 4.09 -27.89 -0.11 -1.32 16 19 C -0.54 -4.74 2.68 -25.65 -0.07 -4.81 16 20 H 0.15 1.34 7.88 -51.93 -0.41 0.93 16 21 C -0.12 -0.56 5.90 -25.20 -0.15 -0.71 16 22 C -0.11 -0.47 6.40 -25.67 -0.16 -0.64 16 23 C -0.61 -3.81 7.24 37.77 0.27 -3.53 16 24 S 2.39 28.08 5.09 -107.50 -0.55 27.54 16 25 O -0.93 -13.85 17.16 -57.73 -0.99 -14.84 16 26 O -0.91 -15.15 17.51 -61.53 -1.08 -16.22 16 27 C 0.08 1.58 6.40 -3.06 -0.02 1.56 16 28 H 0.03 0.93 7.32 -51.93 -0.38 0.55 16 29 H 0.04 1.09 7.44 -51.93 -0.39 0.71 16 30 H 0.00 0.11 6.29 -51.93 -0.33 -0.22 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.44 7.28 -51.93 -0.38 1.06 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.76 7.48 -51.92 -0.39 0.37 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 1.05 7.18 -51.93 -0.37 0.67 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.31 8.08 -51.93 -0.42 -0.10 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.63 6.13 -51.93 -0.32 1.31 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -37.36 364.79 -10.25 -47.61 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.14 Total: -2.43 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.51 Total: -2.56 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.47 Total: -50.72 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.06 Total: -41.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 28.08 SS G_CDS: -0.55 Total: 27.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.36 -10.25 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972009564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.898 kcal (2) G-P(sol) polarization free energy of solvation -37.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds