Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.50697 * 109.47258 * 180.02562 * 5 2 1 7 7 O 1.21280 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00087 * 179.97438 * 6 5 2 9 9 C 1.48658 * 125.78426 * 359.69250 * 8 6 5 10 10 C 1.53288 * 103.33558 * 155.56217 * 9 8 6 11 11 H 1.08992 * 110.74167 * 284.60658 * 10 9 8 12 12 C 1.51615 * 117.40290 * 156.42278 * 10 9 8 13 13 C 1.53817 * 107.01946 * 183.49184 * 12 10 9 14 14 C 1.52534 * 111.69840 * 57.53978 * 13 12 10 15 15 C 1.51896 * 112.20799 * 306.64164 * 14 13 12 16 16 H 1.09006 * 108.49353 * 296.67965 * 15 14 13 17 17 N 1.46502 * 110.39035 * 176.08295 * 15 14 13 18 18 C 1.36933 * 120.00034 * 85.89448 * 17 15 14 19 19 H 1.08004 * 120.00310 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00120 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00138 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47138 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47334 * 120.00205 * 22 20 18 25 25 H 1.48501 * 109.47159 * 239.99942 * 22 20 18 26 26 C 1.51446 * 108.04790 * 55.83130 * 15 14 13 27 27 H 1.09000 * 109.87102 * 55.86333 * 26 15 14 28 28 C 1.48243 * 125.78495 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 30 30 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 31 31 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 32 32 H 1.09003 * 109.46876 * 300.00595 * 5 2 1 33 33 H 1.08997 * 109.47058 * 59.99801 * 5 2 1 34 34 H 1.09000 * 110.63205 * 274.13831 * 9 8 6 35 35 H 1.09003 * 110.63221 * 37.16337 * 9 8 6 36 36 H 1.09002 * 109.94498 * 302.86590 * 12 10 9 37 37 H 1.08993 * 109.94576 * 64.11563 * 12 10 9 38 38 H 1.09000 * 109.03598 * 178.10617 * 13 12 10 39 39 H 1.09003 * 109.03668 * 297.04297 * 13 12 10 40 40 H 1.08994 * 109.04514 * 66.51342 * 14 13 12 41 41 H 1.08999 * 109.04247 * 185.47167 * 14 13 12 42 42 H 0.97000 * 120.00184 * 265.89142 * 17 15 14 43 43 H 0.96999 * 120.00656 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.17063 * 295.88365 * 28 8 6 45 45 H 1.08995 * 110.16932 * 57.68714 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 3.6827 -0.8183 -1.7951 7 8 4.4219 -0.4206 -0.9197 8 7 4.1974 -1.3352 -2.9284 9 6 3.4148 -1.8652 -4.0758 10 6 4.3804 -1.7233 -5.2579 11 1 4.4499 -0.6834 -5.5769 12 6 4.1600 -2.6314 -6.4518 13 6 5.3007 -2.3536 -7.4455 14 6 6.6691 -2.5811 -6.8111 15 6 6.8396 -1.8013 -5.5188 16 1 6.7896 -0.7368 -5.7481 17 7 8.1271 -2.1197 -4.8966 18 6 9.2549 -1.4384 -5.2696 19 1 9.1952 -0.6661 -6.0222 20 6 10.4748 -1.7398 -4.6797 21 7 10.5475 -2.6806 -3.7621 22 14 12.0131 -0.8100 -5.1880 23 1 11.6656 0.1901 -6.2293 24 1 12.5848 -0.1155 -4.0065 25 1 13.0117 -1.7651 -5.7318 26 6 5.7077 -2.1827 -4.5878 27 1 5.6956 -3.2629 -4.4424 28 6 5.6399 -1.4780 -3.2390 29 1 -0.3633 0.5970 -0.8365 30 1 -0.3633 0.4260 0.9352 31 1 -0.3634 -1.0230 -0.0987 32 1 1.7610 -1.7370 -1.6664 33 1 1.7611 -0.1172 -2.4042 34 1 3.1547 -2.9111 -3.9130 35 1 2.5186 -1.2664 -4.2387 36 1 4.1878 -3.6743 -6.1359 37 1 3.1996 -2.4082 -6.9164 38 1 5.1929 -3.0155 -8.3047 39 1 5.2341 -1.3193 -7.7831 40 1 6.7854 -3.6414 -6.5870 41 1 7.4430 -2.2800 -7.5172 42 1 8.1808 -2.8130 -4.2203 43 1 11.4000 -2.8914 -3.3501 44 1 6.1093 -0.4965 -3.3039 45 1 6.1310 -2.0805 -2.4749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992658582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = -87.849817 kcal Electronic energy + Delta-G solvation = -27067.334264 eV Core-core repulsion = 23212.563895 eV Total energy + Delta-G solvation = -3854.770369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.55608 -38.85738 -37.15820 -36.17026 -35.72144 -34.03891 -31.83941 -31.44431 -30.19265 -29.61725 -28.76513 -26.88133 -24.73398 -23.30581 -21.13269 -20.54186 -19.92026 -19.61925 -18.94391 -17.61021 -17.10227 -16.87442 -16.57624 -16.09139 -15.72115 -15.22463 -15.01138 -14.48266 -14.26999 -14.24470 -13.73944 -13.63287 -13.61122 -13.24667 -13.08647 -12.85875 -12.66868 -12.36393 -12.27650 -12.20702 -12.14179 -11.94691 -11.54468 -11.39508 -11.08909 -11.01613 -10.93328 -10.85124 -10.59433 -10.30544 -10.27638 -10.18916 -10.14926 -9.80027 -9.51021 -8.91029 -8.71659 -6.98473 -5.76721 -3.06325 -0.40296 2.37485 2.44735 2.68441 3.44301 3.48835 3.49931 3.52329 3.69624 4.05515 4.28487 4.34125 4.37817 4.55845 4.68829 4.72334 4.75621 4.84594 5.12900 5.20001 5.23242 5.27305 5.39951 5.50239 5.53359 5.62936 5.73950 5.79626 5.85561 5.96093 6.01267 6.07870 6.17759 6.23613 6.34695 6.48298 6.54268 6.58574 6.83162 7.04225 7.34676 7.70361 7.87837 8.40976 9.52766 10.08211 10.42751 11.45675 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.003148 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.214040 B = 8891.142898 C =10402.125977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.456 3.544 3 O -0.920 6.920 4 O -0.920 6.920 5 C -0.655 4.655 6 C 0.552 3.448 7 O -0.527 6.527 8 N -0.611 5.611 9 C 0.107 3.893 10 C -0.108 4.108 11 H 0.087 0.913 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.196 3.804 16 H 0.048 0.952 17 N -0.722 5.722 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.102 4.102 27 H 0.079 0.921 28 C 0.123 3.877 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.343 0.707 -1.753 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.631 3.369 3 O -0.917 6.917 4 O -0.917 6.917 5 C -0.782 4.782 6 C 0.337 3.663 7 O -0.404 6.404 8 N -0.344 5.344 9 C -0.016 4.016 10 C -0.128 4.128 11 H 0.105 0.895 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.085 3.915 16 H 0.066 0.934 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.122 4.122 27 H 0.097 0.903 28 C 0.002 3.998 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.229 1.360 -0.645 25.274 hybrid contribution 0.224 -0.215 -0.891 0.943 sum -25.005 1.145 -1.535 25.078 Atomic orbital electron populations 1.30408 1.27256 1.11558 1.11989 1.07195 0.77420 0.75908 0.76328 1.93605 1.78611 1.34083 1.85428 1.93606 1.78608 1.67191 1.52313 1.30869 1.03346 1.16144 1.27833 1.18657 0.87262 0.78468 0.81899 1.90902 1.60579 1.48333 1.40622 1.49064 1.08997 1.60118 1.16270 1.22208 0.94699 0.99202 0.85465 1.22142 0.95240 1.01228 0.94190 0.89502 1.21295 0.98397 0.99050 0.94970 1.21535 0.94956 1.01183 0.97565 1.21987 0.95020 1.01510 0.99376 1.19506 0.84976 0.97075 0.89905 0.93433 1.42392 1.02245 1.44663 1.46947 1.19243 0.86289 1.13875 1.17746 0.91167 1.24735 0.97767 0.99134 0.99097 1.69659 1.24829 1.33553 1.29788 0.86153 0.83632 0.78956 0.77642 1.20589 1.21828 1.21934 1.22157 0.95956 1.00489 0.93616 0.90264 1.21726 0.78712 1.02238 0.97077 0.85301 0.84934 0.85293 0.82519 0.82525 0.90715 0.90589 0.91555 0.92068 0.92568 0.92530 0.92747 0.91814 0.78173 0.93509 0.90255 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.29 10.62 101.05 1.07 -1.21 16 2 S 2.46 22.95 4.60 -107.50 -0.49 22.45 16 3 O -0.92 -12.79 17.95 -59.50 -1.07 -13.86 16 4 O -0.92 -12.80 17.94 -59.55 -1.07 -13.87 16 5 C -0.65 -4.97 5.32 36.00 0.19 -4.78 16 6 C 0.55 7.94 7.88 -10.99 -0.09 7.86 16 7 O -0.53 -10.30 15.97 2.56 0.04 -10.25 16 8 N -0.61 -8.29 3.38 -170.73 -0.58 -8.86 16 9 C 0.11 0.99 6.39 -2.70 -0.02 0.97 16 10 C -0.11 -1.18 2.48 -89.78 -0.22 -1.41 16 11 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 12 C -0.10 -0.95 5.75 -27.01 -0.16 -1.11 16 13 C -0.11 -1.33 5.84 -26.54 -0.16 -1.49 16 14 C -0.14 -2.21 5.40 -27.53 -0.15 -2.36 16 15 C 0.20 3.56 2.41 -69.28 -0.17 3.40 16 16 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 17 N -0.72 -17.26 5.06 -54.74 -0.28 -17.54 16 18 C -0.24 -6.51 9.95 -15.06 -0.15 -6.66 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C -0.10 -1.52 1.81 -90.35 -0.16 -1.69 16 27 H 0.08 1.19 7.97 -51.93 -0.41 0.77 16 28 C 0.12 2.06 6.51 -3.42 -0.02 2.03 16 29 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 30 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 32 H 0.16 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.16 0.58 7.89 -51.93 -0.41 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.47 7.55 -51.93 -0.39 0.08 16 36 H 0.07 0.63 8.00 -51.93 -0.42 0.22 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.38 9.88 7.81 -40.82 -0.32 9.57 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 1.49 8.08 -51.93 -0.42 1.07 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -39.50 373.76 -9.63 -49.13 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.40 Total: 3.86 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.12 Total: -6.85 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.13 Total: -53.66 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -2.10 Total: -37.99 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -0.49 Total: 22.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.50 -9.63 -49.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992658582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.718 kcal (2) G-P(sol) polarization free energy of solvation -39.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds