Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 108.57701 * 2 1 4 4 O 1.42094 * 108.58193 * 228.97373 * 2 1 3 5 5 C 1.81404 * 101.92433 * 114.48522 * 2 1 3 6 6 C 1.50707 * 112.84772 * 307.07847 * 5 2 1 7 7 O 1.21273 * 119.99980 * 261.09269 * 6 5 2 8 8 N 1.34776 * 119.99872 * 81.09124 * 6 5 2 9 9 C 1.46922 * 120.62888 * 175.13951 * 8 6 5 10 10 C 1.53184 * 108.78023 * 233.58959 * 9 8 6 11 11 C 1.53042 * 109.31345 * 305.36809 * 10 9 8 12 12 N 1.46501 * 109.46094 * 181.38541 * 11 10 9 13 13 C 1.36942 * 119.99998 * 155.00167 * 12 11 10 14 14 H 1.08001 * 119.99797 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99766 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99670 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47174 * 89.99839 * 17 15 13 19 19 H 1.48497 * 109.47280 * 209.99732 * 17 15 13 20 20 H 1.48504 * 109.47259 * 330.00071 * 17 15 13 21 21 C 1.53042 * 109.53850 * 61.36460 * 11 10 9 22 22 C 1.46924 * 120.63382 * 355.12484 * 8 6 5 23 23 C 1.53777 * 113.68736 * 78.34332 * 5 2 1 24 24 C 1.53786 * 87.07774 * 139.99644 * 23 5 2 25 25 C 1.53773 * 87.08033 * 334.56872 * 24 23 5 26 26 H 1.08999 * 109.46847 * 298.04060 * 1 2 3 27 27 H 1.08994 * 109.46972 * 58.04547 * 1 2 3 28 28 H 1.09003 * 109.46870 * 178.04789 * 1 2 3 29 29 H 1.09003 * 109.58249 * 113.80059 * 9 8 6 30 30 H 1.09005 * 109.59077 * 353.38285 * 9 8 6 31 31 H 1.09001 * 109.50080 * 65.31726 * 10 9 8 32 32 H 1.09001 * 109.50413 * 185.41849 * 10 9 8 33 33 H 1.09009 * 109.46004 * 301.34384 * 11 10 9 34 34 H 0.96996 * 120.00321 * 334.99516 * 12 11 10 35 35 H 0.97005 * 120.00066 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.49855 * 178.68592 * 21 11 10 37 37 H 1.08996 * 109.49507 * 58.58580 * 21 11 10 38 38 H 1.08998 * 109.58948 * 246.20070 * 22 8 6 39 39 H 1.08999 * 109.58531 * 6.62356 * 22 8 6 40 40 H 1.08999 * 113.61654 * 254.53737 * 23 5 2 41 41 H 1.09000 * 113.61752 * 25.44694 * 23 5 2 42 42 H 1.09007 * 113.61148 * 220.01700 * 24 23 5 43 43 H 1.09003 * 113.69135 * 89.12601 * 24 23 5 44 44 H 1.09007 * 113.61384 * 270.88527 * 25 24 23 45 45 H 1.09001 * 113.69486 * 139.99782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1888 -0.7356 1.6153 6 6 1.4905 -0.0362 2.7530 7 8 2.0876 0.7820 3.4198 8 7 0.2023 -0.3201 3.0294 9 6 -0.4607 0.2729 4.1988 10 6 -1.0697 -0.8509 5.0430 11 6 -1.9886 -1.7028 4.1644 12 7 -2.5987 -2.7588 4.9762 13 6 -3.7941 -3.3093 4.5976 14 1 -4.2873 -2.9646 3.7007 15 6 -4.3718 -4.3102 5.3666 16 7 -3.7704 -4.7305 6.4592 17 14 -6.0027 -5.0606 4.8504 18 1 -5.7531 -6.2272 3.9661 19 1 -6.7473 -5.5039 6.0563 20 1 -6.8043 -4.0472 4.1184 21 6 -1.1738 -2.3354 3.0339 22 6 -0.5659 -1.2283 2.1669 23 6 2.0381 -2.2656 1.6473 24 6 3.3079 -2.2938 2.5143 25 6 3.6911 -0.9572 1.8577 26 1 -0.3633 0.4831 0.9070 27 1 -0.3633 0.5439 -0.8719 28 1 -0.3633 -1.0271 -0.0350 29 1 -1.2486 0.9495 3.8680 30 1 0.2695 0.8220 4.7934 31 1 -0.2728 -1.4746 5.4479 32 1 -1.6462 -0.4197 5.8614 33 1 -2.7711 -1.0736 3.7400 34 1 -2.1559 -3.0682 5.7819 35 1 -4.1743 -5.4297 6.9968 36 1 -1.8243 -2.9606 2.4223 37 1 -0.3758 -2.9450 3.4578 38 1 -1.3624 -0.6741 1.6704 39 1 0.0948 -1.6697 1.4209 40 1 1.1444 -2.6055 2.1707 41 1 2.1642 -2.7373 0.6728 42 1 3.9861 -3.1112 2.2690 43 1 3.1101 -2.2143 3.5833 44 1 4.2692 -1.0711 0.9406 45 1 4.1323 -0.2398 2.5497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997139802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = -33.293493 kcal Electronic energy + Delta-G solvation = -28421.329993 eV Core-core repulsion = 24568.925364 eV Total energy + Delta-G solvation = -3852.404629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.30250 -38.39227 -37.63028 -37.03614 -36.37013 -34.82842 -32.44015 -31.68803 -29.55947 -29.49318 -27.41731 -26.22110 -25.02331 -23.21683 -22.94610 -21.27563 -20.34929 -19.68737 -18.49635 -18.17012 -17.22219 -16.77203 -16.68622 -16.24472 -15.96132 -15.45237 -14.96958 -14.68107 -14.16666 -14.01449 -13.96897 -13.71742 -13.55988 -13.37237 -13.24781 -12.87726 -12.75725 -12.70048 -12.43114 -12.32629 -12.30189 -11.99155 -11.74034 -11.37612 -11.27557 -11.06814 -11.00391 -10.90050 -10.79023 -10.64709 -10.38539 -10.33774 -10.00808 -9.91157 -9.79019 -9.03279 -8.79474 -7.10558 -5.88416 -3.18547 -0.44121 2.09973 2.42032 2.64659 3.13898 3.34849 3.40389 3.42440 3.54693 3.76231 3.94402 4.02133 4.33470 4.46749 4.47896 4.58010 4.78930 4.85039 5.06191 5.12527 5.14911 5.16857 5.28632 5.32907 5.37937 5.42707 5.50735 5.55370 5.60648 5.66003 5.74688 5.79155 5.93234 6.04116 6.13989 6.20795 6.31781 6.39417 6.69732 6.85531 7.13153 7.57513 7.84688 8.29368 9.41072 9.97046 10.31368 11.33838 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.003434 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.716367 B = 8151.870625 C = 8422.045985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.429 3.571 3 O -0.926 6.926 4 O -0.927 6.927 5 C -0.603 4.603 6 C 0.553 3.447 7 O -0.515 6.515 8 N -0.601 5.601 9 C 0.115 3.885 10 C -0.140 4.140 11 C 0.179 3.821 12 N -0.723 5.723 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.156 4.156 22 C 0.072 3.928 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.090 4.090 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.201 7.574 -11.494 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.609 3.391 3 O -0.923 6.923 4 O -0.924 6.924 5 C -0.694 4.694 6 C 0.338 3.662 7 O -0.390 6.390 8 N -0.335 5.335 9 C -0.007 4.007 10 C -0.179 4.179 11 C 0.069 3.931 12 N -0.363 5.363 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.206 4.206 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.197 4.197 22 C -0.051 4.051 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.128 4.128 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.162 0.838 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.906 8.273 -11.816 18.704 hybrid contribution -1.455 -0.968 0.563 1.836 sum 10.451 7.305 -11.252 17.006 Atomic orbital electron populations 1.31041 1.25932 1.12631 1.12809 1.07861 0.78985 0.75753 0.76457 1.93612 1.79221 1.33656 1.85777 1.93607 1.79627 1.67292 1.51849 1.31548 1.08949 1.09458 1.19445 1.18674 0.81484 0.82006 0.84084 1.90708 1.64935 1.33427 1.49902 1.48151 1.10387 1.46593 1.28345 1.21753 0.97016 0.95832 0.86080 1.22227 0.99735 0.97113 0.98795 1.20151 0.92487 0.89998 0.90501 1.42423 1.23608 1.42062 1.28223 1.19210 0.96965 1.14629 1.06749 0.91140 1.24749 0.99000 0.99550 0.97338 1.69656 1.39743 1.32158 1.16276 0.86218 0.83546 0.79207 0.77345 1.21668 1.21743 1.20729 1.22792 1.00587 0.97014 0.99296 1.23060 0.95819 0.92411 0.93797 1.23234 1.02251 0.86868 1.03741 1.22757 0.96534 0.96972 0.99950 1.22586 0.87678 0.99587 1.02972 0.84138 0.84586 0.83809 0.90938 0.88950 0.91671 0.90200 0.93225 0.78198 0.93396 0.90113 0.91699 0.89696 0.89815 0.87395 0.86860 0.89910 0.89263 0.88240 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.91 8.01 101.05 0.81 -4.10 16 2 S 2.43 25.31 4.93 -107.50 -0.53 24.78 16 3 O -0.93 -13.14 18.10 -57.83 -1.05 -14.19 16 4 O -0.93 -11.04 17.32 -57.83 -1.00 -12.04 16 5 C -0.60 -6.32 0.75 -90.96 -0.07 -6.38 16 6 C 0.55 7.06 5.91 -10.98 -0.06 6.99 16 7 O -0.51 -8.25 15.65 5.56 0.09 -8.16 16 8 N -0.60 -7.01 2.46 -172.77 -0.43 -7.43 16 9 C 0.12 1.41 6.42 -3.72 -0.02 1.39 16 10 C -0.14 -2.01 5.55 -26.61 -0.15 -2.16 16 11 C 0.18 3.00 2.73 -67.89 -0.19 2.82 16 12 N -0.72 -16.35 5.12 -53.38 -0.27 -16.63 16 13 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 14 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 15 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 16 N -0.93 -26.78 13.06 55.49 0.72 -26.06 16 17 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.16 -2.16 5.32 -26.61 -0.14 -2.31 16 22 C 0.07 0.73 2.67 -3.71 -0.01 0.72 16 23 C -0.12 -1.07 5.71 -25.92 -0.15 -1.22 16 24 C -0.12 -1.11 7.80 -25.92 -0.20 -1.31 16 25 C -0.09 -0.88 7.18 -25.93 -0.19 -1.06 16 26 H 0.14 1.05 5.04 -51.92 -0.26 0.79 16 27 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.14 0.76 5.97 -51.92 -0.31 0.45 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.84 8.08 -51.92 -0.42 0.43 16 34 H 0.38 9.46 7.80 -40.82 -0.32 9.15 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.95 7.26 -51.93 -0.38 0.57 16 38 H 0.09 0.73 6.28 -51.93 -0.33 0.40 16 39 H 0.08 0.67 2.23 -51.93 -0.12 0.55 16 40 H 0.11 0.97 4.37 -51.93 -0.23 0.74 16 41 H 0.11 0.81 7.47 -51.93 -0.39 0.42 16 42 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.10 1.08 7.47 -51.93 -0.39 0.69 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -34.32 351.22 -9.23 -43.55 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.42 Total: 8.08 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.61 Total: -13.38 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.03 Total: -50.11 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.96 Total: -34.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 25.31 SS G_CDS: -0.53 Total: 24.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.32 -9.23 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997139802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds