Wall clock time and date at job start Tue Mar 31 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34784 * 119.99775 * 2 1 4 4 O 1.21280 * 120.00025 * 4.76279 * 3 2 1 5 5 C 1.50697 * 119.99609 * 184.76776 * 3 2 1 6 6 H 1.08996 * 110.01355 * 32.33161 * 5 3 2 7 7 C 1.53876 * 110.02459 * 153.71335 * 5 3 2 8 8 C 1.54173 * 108.70169 * 166.47158 * 7 5 3 9 9 S 1.82913 * 105.08549 * 332.08772 * 8 7 5 10 10 O 1.42102 * 109.35376 * 115.52526 * 9 8 7 11 11 O 1.42100 * 109.35342 * 248.72548 * 9 8 7 12 12 C 1.55055 * 110.02535 * 270.95097 * 5 3 2 13 13 C 1.46495 * 119.99849 * 179.97438 * 2 1 3 14 14 C 1.53032 * 109.45973 * 65.73961 * 13 2 1 15 15 C 1.53195 * 109.31427 * 178.59966 * 14 13 2 16 16 N 1.46935 * 108.76607 * 54.65194 * 15 14 13 17 17 C 1.36933 * 120.63041 * 126.36163 * 16 15 14 18 18 H 1.08001 * 120.00238 * 333.26179 * 17 16 15 19 19 C 1.38813 * 119.99714 * 153.25661 * 17 16 15 20 20 N 1.31619 * 119.99949 * 346.86871 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 166.86379 * 19 17 16 22 22 H 1.48494 * 109.47111 * 59.99880 * 21 19 17 23 23 H 1.48496 * 109.47455 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46934 * 300.00271 * 21 19 17 25 25 C 1.46924 * 118.73657 * 306.38900 * 16 15 14 26 26 C 1.53038 * 109.46093 * 305.67892 * 13 2 1 27 27 H 1.08999 * 109.47100 * 275.18996 * 1 2 3 28 28 H 1.08997 * 109.47038 * 35.19370 * 1 2 3 29 29 H 1.08997 * 109.46899 * 155.19179 * 1 2 3 30 30 H 1.09002 * 109.64335 * 286.31875 * 7 5 3 31 31 H 1.09000 * 109.64886 * 46.75012 * 7 5 3 32 32 H 1.09003 * 110.31761 * 90.99378 * 8 7 5 33 33 H 1.09002 * 110.31360 * 213.08326 * 8 7 5 34 34 H 1.09001 * 110.79064 * 316.54585 * 12 5 3 35 35 H 1.08993 * 110.78891 * 80.01165 * 12 5 3 36 36 H 1.09004 * 109.45871 * 185.70890 * 13 2 1 37 37 H 1.09010 * 109.49614 * 298.56011 * 14 13 2 38 38 H 1.08990 * 109.50293 * 58.66172 * 14 13 2 39 39 H 1.08998 * 109.59849 * 294.87101 * 15 14 13 40 40 H 1.08992 * 109.70677 * 174.49987 * 15 14 13 41 41 H 0.97008 * 119.99499 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58778 * 293.81866 * 25 16 15 43 43 H 1.08993 * 109.58708 * 173.39389 * 25 16 15 44 44 H 1.09004 * 109.49870 * 301.33806 * 26 13 2 45 45 H 1.09002 * 109.49932 * 61.40361 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5357 2.2158 0.0872 5 6 3.6420 1.1695 -0.1085 6 1 3.9733 0.3282 -0.7171 7 6 4.1234 2.4920 -0.7306 8 6 5.6457 2.6128 -0.5185 9 16 5.9911 1.6614 1.0051 10 8 6.8128 0.5463 0.6879 11 8 6.3757 2.5547 2.0411 12 6 4.2764 1.0856 1.3039 13 6 2.1975 -1.2687 0.0006 14 6 1.9390 -2.0072 -1.3146 15 6 2.7339 -3.3167 -1.3251 16 7 2.3904 -4.0880 -0.1225 17 6 1.9609 -5.3842 -0.2241 18 1 1.4655 -5.7201 -1.1230 19 6 2.1625 -6.2666 0.8284 20 7 2.9818 -5.9467 1.8076 21 14 1.2708 -7.9078 0.8551 22 1 1.6441 -8.6936 -0.3483 23 1 1.6546 -8.6599 2.0766 24 1 -0.1958 -7.6743 0.8584 25 6 2.5158 -3.4416 1.1909 26 6 1.7236 -2.1305 1.1731 27 1 -0.3633 0.0930 1.0234 28 1 -0.3633 0.8398 -0.5923 29 1 -0.3633 -0.9328 -0.4312 30 1 3.9005 2.4976 -1.7976 31 1 3.6204 3.3292 -0.2467 32 1 6.1811 2.1809 -1.3641 33 1 5.9277 3.6574 -0.3864 34 1 3.7616 1.7486 1.9992 35 1 4.2707 0.0591 1.6701 36 1 3.2648 -1.0718 0.1027 37 1 0.8750 -2.2266 -1.4056 38 1 2.2551 -1.3834 -2.1505 39 1 3.8014 -3.0964 -1.3252 40 1 2.4798 -3.8938 -2.2141 41 1 3.1223 -6.5633 2.5433 42 1 3.5656 -3.2314 1.3960 43 1 2.1155 -4.0999 1.9618 44 1 1.8865 -1.5942 2.1080 45 1 0.6617 -2.3482 1.0587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005676202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:47 Heat of formation + Delta-G solvation = -77.576701 kcal Electronic energy + Delta-G solvation = -27909.883407 eV Core-core repulsion = 24055.558514 eV Total energy + Delta-G solvation = -3854.324893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.46956 -37.88636 -37.24459 -36.32326 -35.99862 -35.14379 -32.37982 -30.67363 -30.29831 -29.61752 -27.60044 -25.75058 -25.08559 -22.64252 -22.32320 -21.94224 -19.55477 -19.12681 -18.79948 -17.77318 -17.16537 -16.74041 -16.25177 -16.00723 -15.55991 -15.34195 -14.94319 -14.62569 -14.26984 -14.11632 -13.86633 -13.66668 -13.21329 -13.05129 -12.85000 -12.69248 -12.55005 -12.50299 -12.36255 -12.20994 -12.11195 -12.02383 -11.63754 -11.44566 -11.17604 -11.08759 -10.85038 -10.80024 -10.68676 -10.47890 -10.41616 -10.17944 -9.96207 -9.84341 -9.59357 -8.65792 -8.45427 -6.80325 -5.85883 -3.30817 -0.22441 2.16547 2.49579 2.93350 3.33461 3.35714 3.39780 3.39925 3.74781 4.01438 4.21012 4.23666 4.41901 4.47250 4.53902 4.63813 4.98190 5.09046 5.21329 5.27449 5.31966 5.33608 5.36802 5.42253 5.48125 5.60122 5.60465 5.66009 5.81844 5.88547 6.07662 6.19024 6.28265 6.37708 6.46861 6.59628 6.61851 6.80603 7.24641 7.37965 7.59770 7.70188 8.05827 8.36498 9.12597 9.74810 10.29018 11.21758 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003635 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.365881 B = 7700.666045 C = 8727.983858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.530 3.470 4 O -0.545 6.545 5 C -0.115 4.115 6 H 0.119 0.881 7 C -0.098 4.098 8 C -0.592 4.592 9 S 2.392 3.608 10 O -0.927 6.927 11 O -0.937 6.937 12 C -0.582 4.582 13 C 0.133 3.867 14 C -0.143 4.143 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.167 3.833 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.256 0.744 42 H 0.020 0.980 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 16.175 -4.830 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.332 5.332 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.138 4.138 6 H 0.137 0.863 7 C -0.137 4.137 8 C -0.721 4.721 9 S 2.575 3.425 10 O -0.924 6.924 11 O -0.934 6.934 12 C -0.711 4.711 13 C 0.031 3.969 14 C -0.184 4.184 15 C 0.018 3.982 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.550 5.550 21 Si 0.736 3.264 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.041 3.959 26 C -0.188 4.188 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.594 16.432 -4.129 17.018 hybrid contribution -1.202 -0.878 -0.365 1.532 sum 0.392 15.554 -4.494 16.195 Atomic orbital electron populations 1.21580 0.79225 1.02778 1.01872 1.48179 1.07237 1.06238 1.71565 1.19873 0.88457 0.83597 0.76424 1.90676 1.69878 1.31294 1.50519 1.22040 0.95336 1.01313 0.95061 0.86337 1.21772 0.90621 0.97109 1.04197 1.30517 1.04817 1.15450 1.21340 1.09059 0.78277 0.76919 0.78260 1.93669 1.63732 1.50624 1.84337 1.93618 1.80919 1.64981 1.53873 1.30759 1.23048 1.14217 1.03104 1.21499 0.95957 0.81913 0.97537 1.22451 1.02246 0.98446 0.95214 1.20892 0.95322 0.90433 0.91533 1.44077 1.76885 1.10330 1.00175 1.19166 1.30696 0.85860 1.02529 0.91564 1.25042 0.98019 0.97819 0.98720 1.69943 1.36296 1.36619 1.12189 0.86319 0.79478 0.83538 0.77097 1.20871 1.21566 1.21057 1.20932 0.95776 0.89491 0.89724 1.22621 1.02067 0.98764 0.95382 0.92753 0.91344 0.90502 0.88592 0.88166 0.84238 0.84079 0.83712 0.83330 0.89448 0.91631 0.92735 0.96054 0.92278 0.93422 0.96172 0.87975 0.92865 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.26 59.85 0.55 1.63 16 2 N -0.60 -7.90 2.76 -173.89 -0.48 -8.38 16 3 C 0.53 6.83 6.79 -10.98 -0.07 6.76 16 4 O -0.55 -8.35 15.62 5.56 0.09 -8.26 16 5 C -0.12 -1.13 2.02 -90.23 -0.18 -1.31 16 6 H 0.12 1.04 6.55 -51.93 -0.34 0.70 16 7 C -0.10 -0.76 5.53 -25.66 -0.14 -0.90 16 8 C -0.59 -3.73 7.26 37.77 0.27 -3.45 16 9 S 2.39 22.70 6.11 -107.50 -0.66 22.04 16 10 O -0.93 -12.34 18.14 -57.71 -1.05 -13.38 16 11 O -0.94 -11.91 18.15 -57.71 -1.05 -12.96 16 12 C -0.58 -5.40 6.51 38.24 0.25 -5.15 16 13 C 0.13 1.91 2.19 -67.90 -0.15 1.76 16 14 C -0.14 -2.13 5.41 -26.61 -0.14 -2.28 16 15 C 0.15 2.71 6.52 -3.70 -0.02 2.68 16 16 N -0.59 -13.59 3.01 -172.32 -0.52 -14.10 16 17 C -0.25 -6.52 9.62 -15.06 -0.14 -6.67 16 18 H 0.07 1.67 7.86 -52.49 -0.41 1.26 16 19 C 0.00 0.06 5.03 -17.43 -0.09 -0.03 16 20 N -0.91 -25.03 10.85 55.49 0.60 -24.43 16 21 Si 0.91 20.86 29.57 -169.99 -5.03 15.83 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.17 3.63 5.31 -3.71 -0.02 3.61 16 26 C -0.15 -2.50 5.24 -26.61 -0.14 -2.64 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 29 H 0.08 0.91 6.58 -51.93 -0.34 0.57 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.82 7.43 -51.93 -0.39 0.44 16 32 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.14 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.15 1.37 7.55 -51.93 -0.39 0.98 16 36 H 0.09 1.18 4.91 -51.93 -0.25 0.92 16 37 H 0.06 1.01 6.98 -51.92 -0.36 0.65 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 2.55 5.80 -51.93 -0.30 2.25 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.08 7.44 -51.93 -0.39 0.70 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -34.49 360.47 -9.61 -44.10 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.92 Total: 0.08 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.03 Total: -5.98 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.40 Total: -46.91 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.01 Total: -34.60 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.66 Total: 22.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.49 -9.61 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005676202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.477 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds