Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42093 * 108.57753 * 2 1 4 4 O 1.42102 * 108.57704 * 228.97566 * 2 1 3 5 5 C 1.81396 * 101.92154 * 114.48934 * 2 1 3 6 6 C 1.50699 * 109.47167 * 179.97438 * 5 2 1 7 7 O 1.21279 * 120.00146 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99821 * 179.97438 * 6 5 2 9 9 C 1.46943 * 120.85088 * 0.02562 * 8 6 5 10 10 C 1.53140 * 109.03239 * 125.95887 * 9 8 6 11 11 C 1.53113 * 109.47852 * 54.06881 * 10 9 8 12 12 C 1.52863 * 109.34326 * 299.35056 * 11 10 9 13 13 H 1.08994 * 109.25600 * 302.49998 * 12 11 10 14 14 C 1.52767 * 110.20349 * 183.23457 * 12 11 10 15 15 N 1.46889 * 109.19348 * 292.67706 * 14 12 11 16 16 C 1.36933 * 120.77603 * 126.63248 * 15 14 12 17 17 H 1.08012 * 119.99845 * 207.50861 * 16 15 14 18 18 C 1.38808 * 120.00520 * 27.50203 * 16 15 14 19 19 N 1.31621 * 119.99480 * 17.32515 * 18 16 15 20 20 Si 1.86800 * 120.00374 * 197.31898 * 18 16 15 21 21 H 1.48501 * 109.46804 * 60.00446 * 20 18 16 22 22 H 1.48502 * 109.47140 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47181 * 300.00084 * 20 18 16 24 24 C 1.46975 * 118.44749 * 306.64906 * 15 14 12 25 25 C 1.53152 * 109.19508 * 53.89777 * 24 15 14 26 26 C 1.47311 * 120.84427 * 179.97438 * 8 6 5 27 27 H 1.08995 * 110.07546 * 355.10744 * 26 8 6 28 28 H 1.09000 * 109.47476 * 305.51175 * 1 2 3 29 29 H 1.09003 * 109.46966 * 65.51487 * 1 2 3 30 30 H 1.08997 * 109.47169 * 185.50830 * 1 2 3 31 31 H 1.09006 * 109.46928 * 60.00073 * 5 2 1 32 32 H 1.08996 * 109.47480 * 300.00254 * 5 2 1 33 33 H 1.09004 * 109.54469 * 6.09479 * 9 8 6 34 34 H 1.08995 * 109.62198 * 245.87262 * 9 8 6 35 35 H 1.09004 * 109.46485 * 294.06707 * 10 9 8 36 36 H 1.08997 * 109.46826 * 174.06787 * 10 9 8 37 37 H 1.08993 * 109.49992 * 59.31457 * 11 10 9 38 38 H 1.09000 * 109.49370 * 179.39732 * 11 10 9 39 39 H 1.09004 * 109.51991 * 52.58936 * 14 12 11 40 40 H 1.08998 * 109.52169 * 172.75802 * 14 12 11 41 41 H 0.97001 * 119.99798 * 179.97438 * 19 18 16 42 42 H 1.09009 * 109.61001 * 174.05577 * 24 15 14 43 43 H 1.09001 * 109.61185 * 294.57006 * 24 15 14 44 44 H 1.08996 * 110.08619 * 185.37108 * 25 24 15 45 45 H 1.09004 * 108.85273 * 65.42040 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6826 -0.8184 1.7951 7 8 4.4218 -0.4198 0.9201 8 7 4.1973 -1.3343 2.9288 9 6 3.3191 -1.8222 4.0012 10 6 3.7021 -3.2651 4.3427 11 6 5.1970 -3.3335 4.6667 12 6 6.0005 -2.8805 3.4477 13 1 5.7443 -3.5087 2.5946 14 6 7.4971 -3.0171 3.7219 15 7 7.8882 -2.0526 4.7584 16 6 8.5570 -2.4627 5.8807 17 1 8.4596 -1.9060 6.8011 18 6 9.3601 -3.5940 5.8356 19 7 9.7562 -4.0740 4.6758 20 14 9.8787 -4.4352 7.4208 21 1 8.6718 -4.8814 8.1621 22 1 10.7275 -5.6114 7.1023 23 1 10.6495 -3.4813 8.2581 24 6 7.5446 -0.6370 4.5630 25 6 6.0414 -0.5160 4.2955 26 6 5.6546 -1.4246 3.1241 27 1 6.1736 -1.1095 2.2189 28 1 -0.3634 0.5969 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0986 31 1 1.7610 -1.7370 1.6663 32 1 1.7610 -0.1172 2.4042 33 1 2.2822 -1.7897 3.6666 34 1 3.4369 -1.1949 4.8847 35 1 3.4850 -3.9098 3.4910 36 1 3.1275 -3.5987 5.2067 37 1 5.4167 -2.6796 5.5105 38 1 5.4677 -4.3585 4.9202 39 1 7.7136 -4.0287 4.0655 40 1 8.0549 -2.8151 2.8074 41 1 10.3177 -4.8644 4.6442 42 1 7.8049 -0.0705 5.4572 43 1 8.0902 -0.2430 3.7055 44 1 5.7859 0.5158 4.0546 45 1 5.4987 -0.8249 5.1890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021536737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -74.875930 kcal Electronic energy + Delta-G solvation = -27997.145209 eV Core-core repulsion = 24142.937430 eV Total energy + Delta-G solvation = -3854.207779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.51671 -38.26721 -37.13746 -36.14160 -35.66212 -32.89540 -32.65617 -31.01490 -30.25854 -29.78003 -29.08550 -25.66827 -24.85649 -22.60797 -22.12689 -21.46539 -19.74340 -18.90293 -17.93372 -17.64777 -17.00837 -16.53284 -16.44021 -16.10640 -15.30552 -15.29744 -15.09556 -14.43771 -14.13983 -13.70712 -13.67590 -13.59558 -13.56319 -13.24509 -12.94148 -12.83504 -12.49478 -12.41640 -12.30747 -12.18894 -12.12384 -11.60763 -11.41259 -11.20536 -11.04179 -10.93147 -10.76685 -10.68581 -10.53237 -10.24500 -10.12622 -10.04497 -9.95599 -9.67479 -9.47875 -8.55641 -8.38807 -6.70812 -5.81443 -3.23291 -0.37537 2.42020 2.47292 2.82120 3.35819 3.42312 3.42582 3.53690 3.72108 4.14323 4.31791 4.39319 4.46770 4.71785 4.73585 4.84532 5.03101 5.10598 5.21507 5.33586 5.40245 5.41712 5.44969 5.58025 5.67487 5.82375 5.98261 6.00215 6.13530 6.28032 6.34692 6.40194 6.45625 6.64212 6.74155 6.79716 6.91170 6.97542 7.27831 7.38825 7.61573 7.76465 7.98235 8.41474 9.17961 9.81277 10.38690 11.27332 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.003060 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.891010 B = 9148.762100 C = 9384.165239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.456 3.544 3 O -0.922 6.922 4 O -0.921 6.921 5 C -0.659 4.659 6 C 0.539 3.461 7 O -0.534 6.534 8 N -0.593 5.593 9 C 0.104 3.896 10 C -0.136 4.136 11 C -0.104 4.104 12 C -0.116 4.116 13 H 0.058 0.942 14 C 0.177 3.823 15 N -0.588 5.588 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.147 3.853 25 C -0.142 4.142 26 C 0.152 3.848 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.021 0.979 41 H 0.255 0.745 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.316 4.412 -3.046 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.632 3.368 3 O -0.919 6.919 4 O -0.918 6.918 5 C -0.786 4.786 6 C 0.324 3.676 7 O -0.412 6.412 8 N -0.324 5.324 9 C -0.019 4.019 10 C -0.174 4.174 11 C -0.142 4.142 12 C -0.137 4.137 13 H 0.077 0.923 14 C 0.050 3.950 15 N -0.310 5.310 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.020 3.980 25 C -0.182 4.182 26 C 0.051 3.949 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.212 4.758 -4.148 22.131 hybrid contribution -0.553 -0.909 1.586 1.910 sum -21.765 3.849 -2.562 22.251 Atomic orbital electron populations 1.30414 1.27382 1.11551 1.11943 1.07179 0.77362 0.75891 0.76404 1.93596 1.78612 1.34151 1.85506 1.93602 1.78585 1.67173 1.52430 1.30893 1.04062 1.16008 1.27638 1.19051 0.87179 0.78507 0.82871 1.90856 1.60483 1.48754 1.41081 1.48434 1.08491 1.59454 1.16066 1.21790 0.93291 0.96106 0.90756 1.21986 0.98880 0.95193 1.01374 1.21437 0.91592 1.02202 0.98944 1.22028 1.00666 0.93717 0.97272 0.92338 1.20732 0.86440 0.96609 0.91188 1.44014 1.64984 1.00338 1.21685 1.19095 1.20976 1.10009 0.88030 0.91706 1.25020 0.97119 1.00938 0.96419 1.70020 1.36891 1.24566 1.23084 0.86394 0.78108 0.79139 0.83268 1.21079 1.21676 1.20926 1.20843 0.90715 0.87722 0.98701 1.22427 1.00450 0.97718 0.97576 1.21507 0.76994 0.96766 0.99675 0.88396 0.85319 0.84980 0.85308 0.82494 0.82524 0.90455 0.90832 0.92015 0.91106 0.90434 0.91870 0.88863 0.96093 0.93520 0.92364 0.96236 0.92736 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.50 10.62 101.05 1.07 -1.42 16 2 S 2.46 23.47 4.60 -107.50 -0.49 22.97 16 3 O -0.92 -12.83 17.95 -59.52 -1.07 -13.90 16 4 O -0.92 -12.98 17.95 -59.53 -1.07 -14.04 16 5 C -0.66 -5.28 4.64 36.01 0.17 -5.11 16 6 C 0.54 7.87 7.73 -10.99 -0.08 7.78 16 7 O -0.53 -10.25 15.07 2.56 0.04 -10.21 16 8 N -0.59 -8.46 2.65 -164.88 -0.44 -8.89 16 9 C 0.10 1.09 5.86 -3.73 -0.02 1.07 16 10 C -0.14 -1.58 6.08 -26.60 -0.16 -1.74 16 11 C -0.10 -1.68 4.86 -26.74 -0.13 -1.81 16 12 C -0.12 -2.13 2.45 -90.76 -0.22 -2.35 16 13 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 14 C 0.18 4.07 4.70 -3.95 -0.02 4.05 16 15 N -0.59 -14.04 2.65 -172.59 -0.46 -14.50 16 16 C -0.25 -6.60 9.60 -15.06 -0.14 -6.74 16 17 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 19 N -0.90 -25.58 11.18 55.49 0.62 -24.96 16 20 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.15 3.03 6.49 -3.70 -0.02 3.00 16 25 C -0.14 -2.43 5.08 -26.54 -0.13 -2.56 16 26 C 0.15 2.66 2.61 -67.33 -0.18 2.48 16 27 H 0.10 1.96 7.06 -51.93 -0.37 1.59 16 28 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.16 0.69 7.71 -51.92 -0.40 0.29 16 32 H 0.16 0.65 7.94 -51.93 -0.41 0.23 16 33 H 0.08 0.52 5.96 -51.93 -0.31 0.21 16 34 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.36 6.22 -51.93 -0.32 1.04 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.16 7.94 -51.92 -0.41 0.75 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.06 5.42 -51.93 -0.28 0.78 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -37.52 357.78 -9.44 -46.96 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.97 Total: -1.55 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.27 Total: -48.35 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.10 Total: -38.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 23.47 SS G_CDS: -0.49 Total: 22.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.52 -9.44 -46.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021536737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.916 kcal (2) G-P(sol) polarization free energy of solvation -37.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds