Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57961 * 2 1 4 4 O 1.42100 * 108.57328 * 228.97555 * 2 1 3 5 5 C 1.81400 * 101.92084 * 114.49080 * 2 1 3 6 6 C 1.50703 * 109.47063 * 179.97438 * 5 2 1 7 7 O 1.21281 * 119.99718 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99783 * 180.02562 * 6 5 2 9 9 C 1.46941 * 120.84515 * 359.97163 * 8 6 5 10 10 C 1.53147 * 109.02309 * 234.04865 * 9 8 6 11 11 C 1.53232 * 108.82341 * 305.52370 * 10 9 8 12 12 C 1.52859 * 109.28200 * 61.84781 * 11 10 9 13 13 H 1.09003 * 109.24988 * 55.92912 * 12 11 10 14 14 C 1.52770 * 110.21066 * 175.97539 * 12 11 10 15 15 N 1.46891 * 109.19398 * 66.55924 * 14 12 11 16 16 C 1.36939 * 120.76753 * 233.31436 * 15 14 12 17 17 H 1.07998 * 120.00215 * 29.30468 * 16 15 14 18 18 C 1.38817 * 119.99799 * 209.30503 * 16 15 14 19 19 N 1.31620 * 119.99790 * 24.31066 * 18 16 15 20 20 Si 1.86801 * 120.00051 * 204.31331 * 18 16 15 21 21 H 1.48497 * 109.47197 * 179.97438 * 20 18 16 22 22 H 1.48492 * 109.46907 * 299.99887 * 20 18 16 23 23 H 1.48506 * 109.46919 * 59.99770 * 20 18 16 24 24 C 1.46966 * 118.45687 * 53.59074 * 15 14 12 25 25 C 1.53538 * 108.38100 * 305.38939 * 24 15 14 26 26 C 1.47308 * 120.84360 * 180.02562 * 8 6 5 27 27 H 1.09005 * 110.07240 * 4.89205 * 26 8 6 28 28 H 1.09002 * 109.46836 * 305.51509 * 1 2 3 29 29 H 1.09006 * 109.47260 * 65.50794 * 1 2 3 30 30 H 1.08995 * 109.47288 * 185.50801 * 1 2 3 31 31 H 1.09003 * 109.47341 * 59.99761 * 5 2 1 32 32 H 1.09003 * 109.46717 * 299.99865 * 5 2 1 33 33 H 1.08999 * 109.55316 * 353.91068 * 9 8 6 34 34 H 1.08997 * 109.54346 * 114.09615 * 9 8 6 35 35 H 1.09001 * 109.47194 * 65.92734 * 10 9 8 36 36 H 1.08999 * 109.47062 * 185.92869 * 10 9 8 37 37 H 1.09007 * 110.17224 * 301.51571 * 11 10 9 38 38 H 1.08994 * 108.87914 * 181.40335 * 11 10 9 39 39 H 1.09000 * 109.51891 * 306.63587 * 14 12 11 40 40 H 1.09004 * 109.51683 * 186.47546 * 14 12 11 41 41 H 0.96994 * 120.00472 * 5.77747 * 19 18 16 42 42 H 1.09005 * 109.61450 * 65.16409 * 24 15 14 43 43 H 1.09004 * 109.61602 * 185.69011 * 24 15 14 44 44 H 1.09002 * 109.58822 * 295.49628 * 25 24 15 45 45 H 1.08996 * 109.39092 * 175.52110 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.6827 -0.8184 1.7951 7 8 4.4218 -0.4206 0.9197 8 7 4.1973 -1.3354 2.9284 9 6 3.3190 -1.8232 4.0007 10 6 3.7031 -1.1337 5.3131 11 6 5.1983 -1.3523 5.5674 12 6 6.0016 -0.7134 4.4347 13 1 5.7334 0.3400 4.3537 14 6 7.4983 -0.8318 4.7172 15 7 7.8884 -2.2471 4.6692 16 6 8.5581 -2.8250 5.7146 17 1 8.4084 -2.4598 6.7198 18 6 9.4294 -3.8804 5.4821 19 7 9.9851 -4.0264 4.2979 20 14 9.8133 -5.0933 6.8499 21 1 10.7632 -6.1193 6.3496 22 1 10.4223 -4.3710 7.9955 23 1 8.5590 -5.7543 7.2918 24 6 7.5487 -3.0269 3.4707 25 6 6.0379 -2.9044 3.2256 26 6 5.6546 -1.4246 3.1241 27 1 6.1737 -0.9490 2.2919 28 1 -0.3633 0.5970 0.8365 29 1 -0.3634 0.4261 -0.9352 30 1 -0.3633 -1.0229 0.0986 31 1 1.7610 -1.7371 1.6664 32 1 1.7610 -0.1172 2.4042 33 1 2.2823 -1.5914 3.7569 34 1 3.4365 -2.9017 4.1059 35 1 3.4870 -0.0678 5.2403 36 1 3.1284 -1.5658 6.1323 37 1 5.4197 -2.4187 5.6136 38 1 5.4674 -0.8833 6.5137 39 1 7.7154 -0.4274 5.7059 40 1 8.0562 -0.2745 3.9646 41 1 9.8528 -3.3519 3.6136 42 1 8.0943 -2.6349 2.6123 43 1 7.8117 -4.0730 3.6280 44 1 5.4952 -3.3641 4.0516 45 1 5.7800 -3.4111 2.2956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021536738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -77.131869 kcal Electronic energy + Delta-G solvation = -28004.941109 eV Core-core repulsion = 24150.635506 eV Total energy + Delta-G solvation = -3854.305604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.63356 -38.41426 -37.17254 -36.18381 -35.86827 -33.26245 -32.48962 -31.14578 -30.03535 -29.83603 -29.26025 -25.55831 -24.85443 -22.66586 -22.25858 -21.53821 -19.80865 -18.94383 -18.04038 -17.71304 -17.35185 -16.73253 -16.55325 -16.17040 -15.49714 -15.34347 -14.93054 -14.46754 -13.98598 -13.88732 -13.70978 -13.67662 -13.60714 -13.39501 -13.20406 -13.02648 -12.65281 -12.44109 -12.39158 -12.22421 -12.15874 -11.69375 -11.42216 -11.22016 -11.09131 -10.97717 -10.81891 -10.73365 -10.55298 -10.24632 -10.12065 -10.07358 -9.99835 -9.81157 -9.29218 -8.57318 -8.36897 -6.90308 -6.08136 -3.26821 -0.41193 2.35690 2.43561 2.74993 3.47491 3.48883 3.49990 3.68532 3.68614 4.08640 4.27997 4.36505 4.56912 4.64500 4.69869 4.77280 4.92637 4.97336 5.18791 5.19174 5.25311 5.34612 5.38161 5.50567 5.54715 5.76646 5.86129 5.88971 5.99896 6.15448 6.19203 6.28432 6.32589 6.42808 6.63592 6.67669 6.71124 6.78361 7.00370 7.11901 7.33383 7.91130 7.98583 8.55579 9.08729 9.81901 10.27408 11.20145 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.003108 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.857332 B = 9006.670140 C = 9356.449506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.455 3.545 3 O -0.922 6.922 4 O -0.920 6.920 5 C -0.659 4.659 6 C 0.539 3.461 7 O -0.533 6.533 8 N -0.593 5.593 9 C 0.102 3.898 10 C -0.134 4.134 11 C -0.108 4.108 12 C -0.109 4.109 13 H 0.061 0.939 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.349 4.349 17 H 0.056 0.944 18 C -0.023 4.023 19 N -0.915 5.915 20 Si 1.064 2.936 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.154 3.846 25 C -0.143 4.143 26 C 0.152 3.848 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.270 0.730 42 H 0.021 0.979 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.086 5.764 -1.691 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.631 3.369 3 O -0.919 6.919 4 O -0.917 6.917 5 C -0.786 4.786 6 C 0.325 3.675 7 O -0.411 6.411 8 N -0.325 5.325 9 C -0.021 4.021 10 C -0.173 4.173 11 C -0.146 4.146 12 C -0.130 4.130 13 H 0.079 0.921 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.478 4.478 17 H 0.073 0.927 18 C -0.226 4.226 19 N -0.554 5.554 20 Si 0.894 3.106 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.027 3.973 25 C -0.183 4.183 26 C 0.050 3.950 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.276 4.838 -2.382 21.949 hybrid contribution -1.702 1.151 0.517 2.119 sum -22.978 5.989 -1.865 23.819 Atomic orbital electron populations 1.30410 1.27293 1.11578 1.11971 1.07190 0.77403 0.75890 0.76375 1.93598 1.78639 1.34139 1.85487 1.93603 1.78604 1.67162 1.52374 1.30899 1.03917 1.16097 1.27702 1.19062 0.87246 0.78334 0.82895 1.90859 1.60512 1.48675 1.41059 1.48403 1.08338 1.59793 1.15956 1.21822 0.93360 0.99498 0.87457 1.21994 0.98478 1.00583 0.96208 1.21529 0.92042 1.03145 0.97873 1.21851 0.98935 0.98138 0.94043 0.92062 1.20800 0.90014 0.87319 0.99225 1.44110 1.65670 1.04123 1.17940 1.19917 1.22087 1.18736 0.87027 0.92664 1.25859 0.93480 1.01211 1.02022 1.70774 1.39885 1.38702 1.06075 0.83533 0.75992 0.76496 0.74569 1.21129 1.22026 1.22116 1.21009 0.89317 0.98171 0.88823 1.22566 1.00951 0.94084 1.00745 1.21493 0.77264 0.97602 0.98611 0.88337 0.85316 0.84944 0.85278 0.82449 0.82497 0.90330 0.90651 0.91897 0.90903 0.89777 0.92217 0.92185 0.96339 0.91907 0.96146 0.89886 0.91481 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.42 10.62 101.05 1.07 -1.34 16 2 S 2.46 23.18 4.60 -107.50 -0.49 22.68 16 3 O -0.92 -12.73 17.95 -59.51 -1.07 -13.80 16 4 O -0.92 -12.88 17.94 -59.55 -1.07 -13.95 16 5 C -0.66 -5.18 4.64 36.01 0.17 -5.01 16 6 C 0.54 7.79 7.73 -10.98 -0.08 7.70 16 7 O -0.53 -10.16 15.07 2.56 0.04 -10.12 16 8 N -0.59 -8.35 2.66 -164.88 -0.44 -8.78 16 9 C 0.10 1.05 5.84 -3.73 -0.02 1.03 16 10 C -0.13 -1.44 6.12 -26.54 -0.16 -1.61 16 11 C -0.11 -1.61 4.82 -26.68 -0.13 -1.73 16 12 C -0.11 -1.83 2.49 -90.76 -0.23 -2.05 16 13 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 14 C 0.15 3.13 5.91 -3.95 -0.02 3.11 16 15 N -0.59 -14.18 2.44 -172.35 -0.42 -14.60 16 16 C -0.35 -9.30 9.49 -15.06 -0.14 -9.44 16 17 H 0.06 1.48 7.94 -52.49 -0.42 1.06 16 18 C -0.02 -0.64 4.70 -17.43 -0.08 -0.72 16 19 N -0.91 -26.98 12.44 55.49 0.69 -26.29 16 20 Si 1.06 24.60 29.98 -169.99 -5.10 19.50 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.50 4.72 -3.51 -0.02 3.49 16 25 C -0.14 -2.65 5.02 -26.35 -0.13 -2.78 16 26 C 0.15 2.63 2.65 -67.33 -0.18 2.45 16 27 H 0.10 1.94 7.06 -51.93 -0.37 1.57 16 28 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 29 H 0.13 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.13 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.16 0.65 7.94 -51.92 -0.41 0.24 16 32 H 0.16 0.63 7.71 -51.92 -0.40 0.23 16 33 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 34 H 0.08 0.79 7.25 -51.93 -0.38 0.41 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.45 6.03 -51.92 -0.31 1.14 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.27 8.07 6.74 -40.82 -0.27 7.79 16 42 H 0.02 0.49 7.89 -51.93 -0.41 0.08 16 43 H 0.08 2.12 6.36 -51.93 -0.33 1.79 16 44 H 0.07 1.20 5.26 -51.93 -0.27 0.93 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -38.40 356.52 -9.34 -47.74 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.90 Total: -0.83 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.04 Total: -6.92 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.17 Total: -49.67 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.10 Total: -37.87 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Atomic # 16 Polarization: 23.18 SS G_CDS: -0.49 Total: 22.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.40 -9.34 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021536738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.395 kcal (2) G-P(sol) polarization free energy of solvation -38.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds