Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42101 * 108.57612 * 2 1 4 4 O 1.42099 * 108.57927 * 228.97626 * 2 1 3 5 5 C 1.81397 * 101.91905 * 114.48577 * 2 1 3 6 6 C 1.50701 * 109.47006 * 180.02562 * 5 2 1 7 7 O 1.21277 * 120.00123 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99858 * 179.97438 * 6 5 2 9 9 C 1.47070 * 120.84708 * 4.42340 * 8 6 5 10 10 C 1.53127 * 109.10957 * 233.45981 * 9 8 6 11 11 C 1.53144 * 109.61642 * 305.93998 * 10 9 8 12 12 C 1.52816 * 109.27630 * 60.85347 * 11 10 9 13 13 H 1.09000 * 109.47275 * 58.02764 * 12 11 10 14 14 C 1.53062 * 110.33788 * 178.57029 * 12 11 10 15 15 N 1.47069 * 108.33252 * 175.43290 * 14 12 11 16 16 C 1.36940 * 120.46663 * 126.71102 * 15 14 12 17 17 H 1.07998 * 120.00261 * 319.37109 * 16 15 14 18 18 C 1.38817 * 119.99658 * 139.36326 * 16 15 14 19 19 N 1.31618 * 119.99638 * 174.10793 * 18 16 15 20 20 Si 1.86794 * 120.00312 * 354.10658 * 18 16 15 21 21 H 1.48500 * 109.47502 * 86.26960 * 20 18 16 22 22 H 1.48497 * 109.47568 * 206.27364 * 20 18 16 23 23 H 1.48501 * 109.47039 * 326.27031 * 20 18 16 24 24 C 1.46864 * 119.06849 * 306.69586 * 15 14 12 25 25 C 1.53315 * 109.10646 * 52.63561 * 24 15 14 26 26 C 1.46883 * 120.95909 * 184.48247 * 8 6 5 27 27 H 1.08996 * 109.68582 * 245.32326 * 26 8 6 28 28 H 1.09001 * 109.47551 * 305.51767 * 1 2 3 29 29 H 1.09002 * 109.47216 * 65.51525 * 1 2 3 30 30 H 1.08994 * 109.47049 * 185.50843 * 1 2 3 31 31 H 1.08994 * 109.47093 * 60.00251 * 5 2 1 32 32 H 1.09002 * 109.47488 * 300.00228 * 5 2 1 33 33 H 1.09000 * 109.54684 * 113.54863 * 9 8 6 34 34 H 1.09007 * 109.54088 * 353.36676 * 9 8 6 35 35 H 1.08998 * 109.45259 * 65.98376 * 10 9 8 36 36 H 1.09002 * 109.44927 * 185.90192 * 10 9 8 37 37 H 1.09006 * 109.50537 * 180.79173 * 11 10 9 38 38 H 1.09004 * 109.50475 * 300.91211 * 11 10 9 39 39 H 1.08998 * 109.69604 * 295.14018 * 14 12 11 40 40 H 1.09005 * 109.69287 * 55.68684 * 14 12 11 41 41 H 0.97003 * 120.00002 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.53282 * 172.52483 * 24 15 14 43 43 H 1.08999 * 109.53044 * 292.74738 * 24 15 14 44 44 H 1.08997 * 109.55991 * 65.73282 * 25 24 15 45 45 H 1.08996 * 109.55768 * 185.95747 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1886 -0.7356 1.6152 6 6 3.6826 -0.8171 1.7957 7 8 4.4217 -0.4178 0.9211 8 7 4.1972 -1.3328 2.9296 9 6 3.3217 -1.9095 3.9610 10 6 3.6294 -1.2475 5.3071 11 6 5.1259 -1.3681 5.6092 12 6 5.9203 -0.6541 4.5163 13 1 5.6117 0.3901 4.4661 14 6 7.4199 -0.7293 4.8135 15 7 8.1459 -0.1283 3.6844 16 6 9.0600 0.8687 3.8984 17 1 8.8526 1.6458 4.6191 18 6 10.2532 0.8802 3.1891 19 7 11.0796 1.8976 3.3081 20 14 10.6859 -0.5482 2.0658 21 1 10.0839 -0.3249 0.7267 22 1 12.1618 -0.6457 1.9350 23 1 10.1558 -1.8097 2.6426 24 6 7.8770 -0.6126 2.3242 25 6 6.3670 -0.5629 2.0632 26 6 5.6463 -1.3334 3.1698 27 1 6.0134 -2.3592 3.1978 28 1 -0.3634 0.5970 0.8364 29 1 -0.3634 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0986 31 1 1.7610 -1.7369 1.6664 32 1 1.7609 -0.1171 2.4043 33 1 3.5005 -2.9823 4.0330 34 1 2.2795 -1.7304 3.6964 35 1 3.3513 -0.1944 5.2657 36 1 3.0595 -1.7423 6.0936 37 1 5.3405 -0.9087 6.5742 38 1 5.4081 -2.4206 5.6357 39 1 7.6414 -0.1783 5.7275 40 1 7.7194 -1.7708 4.9307 41 1 11.9133 1.9058 2.8122 42 1 8.3926 0.0215 1.6030 43 1 8.2301 -1.6391 2.2265 44 1 6.0308 0.4739 2.0622 45 1 6.1485 -1.0184 1.0974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021536739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -59.310763 kcal Electronic energy + Delta-G solvation = -28189.090234 eV Core-core repulsion = 24335.557412 eV Total energy + Delta-G solvation = -3853.532822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75881 -38.11747 -37.13293 -36.21163 -36.09042 -33.28770 -32.71948 -31.30274 -30.32212 -29.90461 -29.21854 -25.82820 -24.78919 -23.02594 -22.26584 -20.80541 -19.89114 -19.42135 -18.90097 -17.42025 -16.90438 -16.67480 -16.50794 -15.97486 -15.67933 -15.36209 -14.90723 -14.62515 -14.37360 -14.12933 -13.73234 -13.70355 -13.55664 -13.52000 -13.10720 -12.73557 -12.58007 -12.51985 -12.41538 -12.18060 -12.11523 -11.92017 -11.49115 -11.39542 -11.19853 -11.14335 -10.97555 -10.92391 -10.64653 -10.47177 -10.31035 -10.11321 -9.59387 -9.50153 -9.06608 -8.54933 -8.53482 -6.69924 -5.88524 -3.41589 -0.38077 2.36103 2.46810 2.73300 3.41999 3.50154 3.52086 3.55344 3.71061 4.08371 4.29134 4.38733 4.54327 4.58830 4.71215 4.74272 4.76972 4.81390 5.08475 5.13017 5.20617 5.24153 5.31599 5.41524 5.46847 5.69080 5.69456 5.81915 5.94507 6.04414 6.13996 6.15993 6.22292 6.32252 6.54361 6.65456 6.77569 6.80358 6.89977 7.11952 7.30620 7.96852 8.16037 8.44070 9.01346 9.76558 10.19233 11.26746 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.004073 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.757435 B = 6873.354891 C = 8042.192881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.454 3.546 3 O -0.917 6.917 4 O -0.921 6.921 5 C -0.662 4.662 6 C 0.540 3.460 7 O -0.514 6.514 8 N -0.597 5.597 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.114 4.114 12 C -0.117 4.117 13 H 0.075 0.925 14 C 0.159 3.841 15 N -0.608 5.608 16 C -0.266 4.266 17 H 0.079 0.921 18 C 0.031 3.969 19 N -0.914 5.914 20 Si 0.896 3.104 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.269 1.269 24 C 0.118 3.882 25 C -0.129 4.129 26 C 0.157 3.843 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.273 -10.013 1.473 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.630 3.370 3 O -0.914 6.914 4 O -0.918 6.918 5 C -0.789 4.789 6 C 0.325 3.675 7 O -0.391 6.391 8 N -0.330 5.330 9 C -0.020 4.020 10 C -0.173 4.173 11 C -0.153 4.153 12 C -0.138 4.138 13 H 0.094 0.906 14 C 0.033 3.967 15 N -0.332 5.332 16 C -0.395 4.395 17 H 0.097 0.903 18 C -0.168 4.168 19 N -0.556 5.556 20 Si 0.727 3.273 21 H -0.211 1.211 22 H -0.233 1.233 23 H -0.194 1.194 24 C -0.008 4.008 25 C -0.168 4.168 26 C 0.055 3.945 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.108 -9.433 0.338 26.824 hybrid contribution -0.551 -1.046 0.222 1.203 sum -25.660 -10.479 0.560 27.723 Atomic orbital electron populations 1.30420 1.27474 1.11441 1.11992 1.07236 0.77380 0.75989 0.76373 1.93621 1.78455 1.33957 1.85373 1.93599 1.78597 1.67265 1.52355 1.30977 1.04309 1.15838 1.27823 1.19096 0.87056 0.78370 0.82930 1.90936 1.58878 1.47867 1.41426 1.48173 1.08387 1.58901 1.17518 1.21817 0.94047 0.97983 0.88105 1.21917 0.97832 1.01479 0.96024 1.21526 0.93601 1.00931 0.99200 1.22122 0.98605 0.99951 0.93103 0.90611 1.20915 0.87689 0.96257 0.91854 1.44337 1.46765 1.42430 0.99691 1.18832 0.94339 1.01885 1.24428 0.90330 1.25564 0.95203 0.97078 0.98987 1.69752 1.11547 1.30671 1.43661 0.86758 0.75817 0.83967 0.80777 1.21096 1.23261 1.19428 1.21626 0.93650 0.97342 0.88184 1.22611 0.95821 1.01127 0.97288 1.21408 0.76684 0.99682 0.96693 0.91118 0.85320 0.84967 0.85397 0.82676 0.82541 0.90996 0.90052 0.91445 0.90811 0.91300 0.91849 0.91485 0.95909 0.92713 0.90859 0.95866 0.91000 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.51 10.62 101.05 1.07 -1.44 16 2 S 2.45 23.55 4.60 -107.50 -0.49 23.05 16 3 O -0.92 -13.33 17.94 -59.55 -1.07 -14.40 16 4 O -0.92 -12.79 17.95 -59.51 -1.07 -13.86 16 5 C -0.66 -4.97 4.65 36.01 0.17 -4.80 16 6 C 0.54 7.54 7.61 -10.99 -0.08 7.46 16 7 O -0.51 -9.60 11.30 2.56 0.03 -9.58 16 8 N -0.60 -7.77 2.98 -165.18 -0.49 -8.26 16 9 C 0.10 0.86 6.34 -3.67 -0.02 0.83 16 10 C -0.13 -1.14 6.07 -26.59 -0.16 -1.31 16 11 C -0.11 -1.29 5.24 -26.75 -0.14 -1.43 16 12 C -0.12 -1.86 2.21 -90.54 -0.20 -2.06 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 14 C 0.16 3.12 5.86 -3.70 -0.02 3.09 16 15 N -0.61 -14.89 2.65 -172.25 -0.46 -15.35 16 16 C -0.27 -7.67 9.97 -15.06 -0.15 -7.82 16 17 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 18 C 0.03 0.94 5.40 -17.43 -0.09 0.85 16 19 N -0.91 -28.87 13.97 55.49 0.78 -28.09 16 20 Si 0.90 23.53 24.33 -169.99 -4.14 19.39 16 21 H -0.28 -7.34 6.66 56.52 0.38 -6.96 16 22 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 23 H -0.27 -6.84 6.37 56.52 0.36 -6.48 16 24 C 0.12 2.74 4.16 -3.68 -0.02 2.73 16 25 C -0.13 -2.63 3.82 -26.62 -0.10 -2.74 16 26 C 0.16 2.56 2.64 -67.63 -0.18 2.38 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 29 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.16 0.51 7.78 -51.93 -0.40 0.11 16 32 H 0.16 0.62 7.88 -51.92 -0.41 0.21 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.40 5.96 -51.92 -0.31 0.09 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 42 H 0.07 1.89 5.21 -51.93 -0.27 1.61 16 43 H 0.02 0.54 6.59 -51.93 -0.34 0.19 16 44 H 0.07 1.61 7.45 -51.93 -0.39 1.23 16 45 H 0.09 1.81 6.14 -51.93 -0.32 1.50 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -40.92 351.30 -8.67 -49.59 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -7.13 Total: -3.53 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.17 Total: -51.70 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -2.11 Total: -37.84 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.14 Total: 19.39 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -0.49 Total: 23.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -40.92 -8.67 -49.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021536739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.716 kcal (2) G-P(sol) polarization free energy of solvation -40.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds