Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42101 * 108.57612 * 2 1 4 4 O 1.42099 * 108.57927 * 228.97626 * 2 1 3 5 5 C 1.81397 * 101.91905 * 114.48577 * 2 1 3 6 6 C 1.50701 * 109.47006 * 180.02562 * 5 2 1 7 7 O 1.21277 * 120.00123 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99858 * 179.97438 * 6 5 2 9 9 C 1.47070 * 120.84708 * 4.42340 * 8 6 5 10 10 C 1.53127 * 109.10957 * 233.45981 * 9 8 6 11 11 C 1.53144 * 109.61642 * 305.93998 * 10 9 8 12 12 C 1.52816 * 109.27630 * 60.85347 * 11 10 9 13 13 H 1.09000 * 109.47275 * 58.02764 * 12 11 10 14 14 C 1.53062 * 110.33788 * 178.57029 * 12 11 10 15 15 N 1.47069 * 108.33252 * 175.43290 * 14 12 11 16 16 C 1.36940 * 120.46663 * 126.71102 * 15 14 12 17 17 H 1.07998 * 120.00261 * 319.37109 * 16 15 14 18 18 C 1.38817 * 119.99658 * 139.36326 * 16 15 14 19 19 N 1.31618 * 119.99638 * 174.10793 * 18 16 15 20 20 Si 1.86794 * 120.00312 * 354.10658 * 18 16 15 21 21 H 1.48500 * 109.47502 * 86.26960 * 20 18 16 22 22 H 1.48497 * 109.47568 * 206.27364 * 20 18 16 23 23 H 1.48501 * 109.47039 * 326.27031 * 20 18 16 24 24 C 1.46864 * 119.06849 * 306.69586 * 15 14 12 25 25 C 1.53315 * 109.10646 * 52.63561 * 24 15 14 26 26 C 1.46883 * 120.95909 * 184.48247 * 8 6 5 27 27 H 1.08996 * 109.68582 * 245.32326 * 26 8 6 28 28 H 1.09001 * 109.47551 * 305.51767 * 1 2 3 29 29 H 1.09002 * 109.47216 * 65.51525 * 1 2 3 30 30 H 1.08994 * 109.47049 * 185.50843 * 1 2 3 31 31 H 1.08994 * 109.47093 * 60.00251 * 5 2 1 32 32 H 1.09002 * 109.47488 * 300.00228 * 5 2 1 33 33 H 1.09000 * 109.54684 * 113.54863 * 9 8 6 34 34 H 1.09007 * 109.54088 * 353.36676 * 9 8 6 35 35 H 1.08998 * 109.45259 * 65.98376 * 10 9 8 36 36 H 1.09002 * 109.44927 * 185.90192 * 10 9 8 37 37 H 1.09006 * 109.50537 * 180.79173 * 11 10 9 38 38 H 1.09004 * 109.50475 * 300.91211 * 11 10 9 39 39 H 1.08998 * 109.69604 * 295.14018 * 14 12 11 40 40 H 1.09005 * 109.69287 * 55.68684 * 14 12 11 41 41 H 0.97003 * 120.00002 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.53282 * 172.52483 * 24 15 14 43 43 H 1.08999 * 109.53044 * 292.74738 * 24 15 14 44 44 H 1.08997 * 109.55991 * 65.73282 * 25 24 15 45 45 H 1.08996 * 109.55768 * 185.95747 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1886 -0.7356 1.6152 6 6 3.6826 -0.8171 1.7957 7 8 4.4217 -0.4178 0.9211 8 7 4.1972 -1.3328 2.9296 9 6 3.3217 -1.9095 3.9610 10 6 3.6294 -1.2475 5.3071 11 6 5.1259 -1.3681 5.6092 12 6 5.9203 -0.6541 4.5163 13 1 5.6117 0.3901 4.4661 14 6 7.4199 -0.7293 4.8135 15 7 8.1459 -0.1283 3.6844 16 6 9.0600 0.8687 3.8984 17 1 8.8526 1.6458 4.6191 18 6 10.2532 0.8802 3.1891 19 7 11.0796 1.8976 3.3081 20 14 10.6859 -0.5482 2.0658 21 1 10.0839 -0.3249 0.7267 22 1 12.1618 -0.6457 1.9350 23 1 10.1558 -1.8097 2.6426 24 6 7.8770 -0.6126 2.3242 25 6 6.3670 -0.5629 2.0632 26 6 5.6463 -1.3334 3.1698 27 1 6.0134 -2.3592 3.1978 28 1 -0.3634 0.5970 0.8364 29 1 -0.3634 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0986 31 1 1.7610 -1.7369 1.6664 32 1 1.7609 -0.1171 2.4043 33 1 3.5005 -2.9823 4.0330 34 1 2.2795 -1.7304 3.6964 35 1 3.3513 -0.1944 5.2657 36 1 3.0595 -1.7423 6.0936 37 1 5.3405 -0.9087 6.5742 38 1 5.4081 -2.4206 5.6357 39 1 7.6414 -0.1783 5.7275 40 1 7.7194 -1.7708 4.9307 41 1 11.9133 1.9058 2.8122 42 1 8.3926 0.0215 1.6030 43 1 8.2301 -1.6391 2.2265 44 1 6.0308 0.4739 2.0622 45 1 6.1485 -1.0184 1.0974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021536739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -94.182970 kcal Electronic energy + Delta-G solvation = -28190.602407 eV Core-core repulsion = 24335.557412 eV Total energy + Delta-G solvation = -3855.044995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.87540 -39.42639 -37.96707 -37.59375 -36.94139 -34.73459 -34.19069 -32.90079 -31.45228 -30.87397 -30.01089 -27.30231 -26.15027 -24.34034 -23.97619 -21.89657 -21.46515 -20.43186 -19.65182 -18.89581 -18.14905 -17.81374 -17.30655 -17.19488 -16.81623 -16.42155 -16.31166 -15.94616 -15.54776 -15.49490 -14.94803 -14.91786 -14.49629 -14.27656 -13.97041 -13.92130 -13.86076 -13.70940 -13.54816 -13.45675 -13.26655 -13.03789 -12.97894 -12.75203 -12.37382 -12.33540 -12.17220 -12.03790 -11.88772 -11.77537 -11.70826 -11.57043 -11.43898 -11.29096 -10.74149 -10.39421 -9.63481 -8.74697 -8.22415 -5.72356 -1.00692 1.29085 1.31987 1.40022 1.43458 1.80520 1.89033 2.36261 2.84258 3.06243 3.12862 3.25431 3.37419 3.74831 3.76185 3.90280 3.98433 4.11280 4.14548 4.18649 4.22801 4.30726 4.34169 4.36293 4.44420 4.59111 4.68555 4.73611 4.82008 4.85447 4.88284 4.97663 5.00638 5.08526 5.13757 5.24552 5.33877 5.35304 5.52572 5.59894 5.90658 6.10363 6.31091 6.90367 6.97718 7.53836 8.00495 8.96339 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.004073 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.757435 B = 6873.354891 C = 8042.192881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.426 3.574 3 O -0.991 6.991 4 O -0.985 6.985 5 C -0.641 4.641 6 C 0.518 3.482 7 O -0.578 6.578 8 N -0.596 5.596 9 C 0.093 3.907 10 C -0.130 4.130 11 C -0.110 4.110 12 C -0.105 4.105 13 H 0.045 0.955 14 C 0.153 3.847 15 N -0.623 5.623 16 C -0.257 4.257 17 H 0.043 0.957 18 C -0.026 4.026 19 N -0.960 5.960 20 Si 0.957 3.043 21 H -0.284 1.284 22 H -0.304 1.304 23 H -0.251 1.251 24 C 0.116 3.884 25 C -0.114 4.114 26 C 0.161 3.839 27 H 0.084 0.916 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.211 0.789 32 H 0.203 0.797 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.443 -13.649 3.308 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.611 3.389 3 O -0.988 6.988 4 O -0.982 6.982 5 C -0.770 4.770 6 C 0.306 3.694 7 O -0.460 6.460 8 N -0.328 5.328 9 C -0.028 4.028 10 C -0.168 4.168 11 C -0.148 4.148 12 C -0.126 4.126 13 H 0.064 0.936 14 C 0.028 3.972 15 N -0.348 5.348 16 C -0.387 4.387 17 H 0.061 0.939 18 C -0.221 4.221 19 N -0.605 5.605 20 Si 0.785 3.215 21 H -0.211 1.211 22 H -0.232 1.232 23 H -0.175 1.175 24 C -0.009 4.009 25 C -0.154 4.154 26 C 0.058 3.942 27 H 0.101 0.899 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.186 0.814 31 H 0.228 0.772 32 H 0.220 0.780 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.298 -13.101 2.196 33.083 hybrid contribution 0.891 0.133 -0.253 0.936 sum -29.407 -12.969 1.944 32.198 Atomic orbital electron populations 1.30064 1.18596 1.14930 1.13976 1.07432 0.80632 0.74097 0.76714 1.93539 1.81726 1.37032 1.86531 1.93522 1.81671 1.67778 1.55257 1.30814 0.99417 1.19720 1.27059 1.20172 0.89809 0.77185 0.82228 1.90914 1.61266 1.50230 1.43546 1.48239 1.07237 1.58719 1.18579 1.22335 0.95432 0.98789 0.86225 1.21933 0.95569 1.01754 0.97494 1.21526 0.95229 1.00988 0.97065 1.21913 0.96422 0.99105 0.95129 0.93604 1.21148 0.89753 0.96498 0.89763 1.44475 1.46699 1.42092 1.01563 1.18756 0.95049 1.02053 1.22810 0.93944 1.26245 0.95338 0.99516 1.01039 1.69890 1.12320 1.32710 1.45594 0.85770 0.75308 0.81540 0.78887 1.21142 1.23181 1.17496 1.21595 0.95681 0.96813 0.86855 1.22338 0.94059 0.99855 0.99108 1.21100 0.79283 0.99216 0.94648 0.89865 0.81851 0.84398 0.81450 0.77165 0.78021 0.88852 0.85386 0.92205 0.86871 0.90955 0.90205 0.92321 0.93952 0.92774 0.94274 0.94669 0.94504 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.31 10.62 113.37 1.20 -0.10 16 2 S 2.43 43.57 4.60 -56.49 -0.26 43.31 16 3 O -0.99 -30.33 17.94 -125.73 -2.26 -32.58 16 4 O -0.99 -28.07 17.95 -125.77 -2.26 -30.33 16 5 C -0.64 -6.74 4.65 71.24 0.33 -6.41 16 6 C 0.52 13.63 7.61 87.66 0.67 14.30 16 7 O -0.58 -22.65 11.30 -0.15 0.00 -22.65 16 8 N -0.60 -13.74 2.98 -794.91 -2.37 -16.10 16 9 C 0.09 0.95 6.34 86.31 0.55 1.49 16 10 C -0.13 -1.48 6.07 30.68 0.19 -1.29 16 11 C -0.11 -2.08 5.24 30.58 0.16 -1.92 16 12 C -0.10 -3.24 2.21 -10.74 -0.02 -3.26 16 13 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 14 C 0.15 6.00 5.86 86.29 0.51 6.50 16 15 N -0.62 -31.59 2.65 -698.89 -1.85 -33.44 16 16 C -0.26 -15.63 9.97 84.03 0.84 -14.79 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.81 16 18 C -0.03 -1.62 5.40 84.86 0.46 -1.16 16 19 N -0.96 -63.71 13.97 21.65 0.30 -63.41 16 20 Si 0.96 50.46 24.33 68.60 1.67 52.12 16 21 H -0.28 -14.89 6.66 99.48 0.66 -14.23 16 22 H -0.30 -15.83 7.11 99.48 0.71 -15.13 16 23 H -0.25 -12.34 6.37 99.48 0.63 -11.71 16 24 C 0.12 5.60 4.16 86.42 0.36 5.96 16 25 C -0.11 -4.88 3.82 30.67 0.12 -4.76 16 26 C 0.16 5.06 2.64 44.98 0.12 5.18 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H 0.21 -0.19 7.78 -2.39 -0.02 -0.21 16 32 H 0.20 0.26 7.88 -2.39 -0.02 0.25 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.13 0.16 5.96 -2.38 -0.01 0.15 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 40 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 42 H 0.04 2.12 5.21 -2.39 -0.01 2.11 16 43 H 0.04 1.62 6.59 -2.39 -0.02 1.60 16 44 H 0.04 1.78 7.45 -2.39 -0.02 1.77 16 45 H 0.08 3.59 6.14 -2.39 -0.01 3.57 16 Total: -1.00 -104.52 351.30 -0.69 -105.21 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 0.86 Total: -1.86 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.47 Total: -0.27 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.92 Total: -112.95 kcal Atomic # 8 Polarization: -81.04 SS G_CDS: -4.52 Total: -85.56 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.67 Total: 52.12 kcal Atomic # 16 Polarization: 43.57 SS G_CDS: -0.26 Total: 43.31 kcal Total: -104.52 -0.69 -105.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021536739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.027 kcal (2) G-P(sol) polarization free energy of solvation -104.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds