Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42099 * 108.58063 * 2 1 4 4 O 1.42102 * 108.57996 * 228.97670 * 2 1 3 5 5 C 1.81401 * 101.92434 * 114.48757 * 2 1 3 6 6 C 1.50695 * 109.47140 * 179.97438 * 5 2 1 7 7 O 1.21282 * 120.00390 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99704 * 180.02562 * 6 5 2 9 9 C 1.47065 * 120.84508 * 354.95988 * 8 6 5 10 10 C 1.53134 * 109.11821 * 126.51097 * 9 8 6 11 11 C 1.53333 * 109.51488 * 53.96007 * 10 9 8 12 12 C 1.52816 * 109.31166 * 299.19810 * 11 10 9 13 13 H 1.09006 * 109.47306 * 302.01476 * 12 11 10 14 14 C 1.53061 * 110.34527 * 181.46782 * 12 11 10 15 15 N 1.47070 * 108.33717 * 184.56927 * 14 12 11 16 16 C 1.36937 * 120.47175 * 233.30336 * 15 14 12 17 17 H 1.07997 * 120.00464 * 144.16553 * 16 15 14 18 18 C 1.38820 * 119.99607 * 324.16044 * 16 15 14 19 19 N 1.31611 * 119.99755 * 359.38256 * 18 16 15 20 20 Si 1.86800 * 119.99850 * 179.37716 * 18 16 15 21 21 H 1.48499 * 109.46846 * 90.00138 * 20 18 16 22 22 H 1.48496 * 109.46913 * 210.00247 * 20 18 16 23 23 H 1.48507 * 109.46935 * 330.00249 * 20 18 16 24 24 C 1.46866 * 119.05748 * 53.31759 * 15 14 12 25 25 C 1.53317 * 109.10115 * 307.34375 * 24 15 14 26 26 C 1.46712 * 120.84611 * 174.93799 * 8 6 5 27 27 H 1.09002 * 109.53311 * 114.60251 * 26 8 6 28 28 H 1.08998 * 109.46667 * 305.51293 * 1 2 3 29 29 H 1.08997 * 109.46818 * 65.51327 * 1 2 3 30 30 H 1.09003 * 109.46779 * 185.50896 * 1 2 3 31 31 H 1.09003 * 109.46432 * 60.00070 * 5 2 1 32 32 H 1.08994 * 109.47134 * 300.00471 * 5 2 1 33 33 H 1.08999 * 109.53995 * 246.42388 * 9 8 6 34 34 H 1.08999 * 109.54138 * 6.59451 * 9 8 6 35 35 H 1.08991 * 109.44664 * 174.08389 * 10 9 8 36 36 H 1.08998 * 109.44411 * 293.99322 * 10 9 8 37 37 H 1.09009 * 109.47809 * 179.25354 * 11 10 9 38 38 H 1.09002 * 109.52626 * 59.17639 * 11 10 9 39 39 H 1.08994 * 109.68939 * 64.85952 * 14 12 11 40 40 H 1.08999 * 109.72315 * 304.29332 * 14 12 11 41 41 H 0.97008 * 119.99455 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.53499 * 187.45936 * 24 15 14 43 43 H 1.09000 * 109.59565 * 67.26804 * 24 15 14 44 44 H 1.08997 * 109.55622 * 294.26597 * 25 24 15 45 45 H 1.09000 * 109.55642 * 173.94977 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.6827 -0.8183 1.7951 7 8 4.4219 -0.4197 0.9201 8 7 4.1974 -1.3352 2.9284 9 6 3.3230 -1.7223 4.0457 10 6 3.6185 -3.1737 4.4343 11 6 5.1173 -3.3337 4.7153 12 6 5.9076 -2.9891 3.4535 13 1 5.5885 -3.6366 2.6367 14 6 7.4071 -3.1763 3.6971 15 7 8.1301 -2.7294 2.4969 16 6 9.0332 -3.5553 1.8825 17 1 9.1284 -3.5464 0.8067 18 6 9.8265 -4.4039 2.6424 19 7 9.7192 -4.4059 3.9542 20 14 11.0462 -5.5431 1.8032 21 1 12.3530 -4.8520 1.6628 22 1 11.2205 -6.7704 2.6208 23 1 10.5344 -5.9123 0.4589 24 6 7.8700 -1.3846 1.9669 25 6 6.3604 -1.2078 1.7660 26 6 5.6442 -1.5265 3.0787 27 1 6.0185 -0.8721 3.8661 28 1 -0.3632 0.5970 0.8365 29 1 -0.3633 0.4259 -0.9352 30 1 -0.3633 -1.0230 0.0987 31 1 1.7611 -1.7370 1.6663 32 1 1.7611 -0.1172 2.4042 33 1 3.5116 -1.0708 4.8990 34 1 2.2804 -1.6314 3.7411 35 1 3.0500 -3.4332 5.3273 36 1 3.3302 -3.8342 3.6165 37 1 5.3249 -4.3640 5.0047 38 1 5.4103 -2.6628 5.5228 39 1 7.6203 -4.2288 3.8836 40 1 7.7174 -2.5809 4.5557 41 1 10.2733 -4.9992 4.4852 42 1 8.3813 -1.2641 1.0118 43 1 8.2339 -0.6371 2.6719 44 1 6.0139 -1.8870 0.9871 45 1 6.1490 -0.1787 1.4754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021536740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = -63.358662 kcal Electronic energy + Delta-G solvation = -28095.651069 eV Core-core repulsion = 24241.942716 eV Total energy + Delta-G solvation = -3853.708352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60641 -37.88381 -37.09692 -36.10124 -35.88163 -33.01067 -32.82308 -30.98253 -30.15597 -29.72186 -28.74039 -25.58971 -24.76375 -22.60780 -22.41088 -20.51107 -19.52918 -19.24938 -18.83254 -17.24327 -16.86850 -16.61055 -16.46239 -15.92008 -15.45535 -15.26332 -14.78541 -14.37891 -14.15356 -13.79588 -13.68300 -13.58296 -13.53214 -13.33505 -12.99060 -12.65001 -12.36999 -12.25587 -12.16186 -12.14644 -12.08150 -11.55496 -11.33048 -11.10325 -10.96171 -10.89389 -10.86459 -10.79646 -10.68805 -10.23027 -10.07636 -10.00520 -9.80383 -9.46136 -8.98909 -8.45306 -8.35265 -6.47313 -5.75427 -3.27188 -0.33829 2.45379 2.51135 2.86038 3.40290 3.46372 3.48882 3.56386 3.75400 4.16678 4.34396 4.41790 4.51919 4.69182 4.76342 4.83976 4.94018 5.06588 5.23592 5.32166 5.41644 5.42720 5.49904 5.63033 5.72849 5.88195 5.91763 6.07858 6.22265 6.27436 6.40829 6.44190 6.56998 6.66337 6.83224 6.98269 7.05165 7.21632 7.35305 7.48352 7.73969 7.84731 8.07562 8.56758 9.28806 9.87974 10.48084 11.31990 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.003499 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.637718 B = 7999.387978 C = 8821.361513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.456 3.544 3 O -0.922 6.922 4 O -0.919 6.919 5 C -0.662 4.662 6 C 0.540 3.460 7 O -0.518 6.518 8 N -0.595 5.595 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.122 4.122 13 H 0.067 0.933 14 C 0.183 3.817 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.140 3.860 25 C -0.128 4.128 26 C 0.156 3.844 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.015 0.985 44 H 0.064 0.936 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.829 6.271 1.780 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.632 3.368 3 O -0.919 6.919 4 O -0.916 6.916 5 C -0.789 4.789 6 C 0.325 3.675 7 O -0.396 6.396 8 N -0.327 5.327 9 C -0.019 4.019 10 C -0.173 4.173 11 C -0.151 4.151 12 C -0.144 4.144 13 H 0.085 0.915 14 C 0.057 3.943 15 N -0.317 5.317 16 C -0.381 4.381 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.167 4.167 26 C 0.055 3.945 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.737 6.663 0.806 22.750 hybrid contribution -0.221 -1.069 0.592 1.242 sum -21.958 5.594 1.397 22.702 Atomic orbital electron populations 1.30422 1.27565 1.11502 1.11874 1.07183 0.77314 0.75902 0.76439 1.93594 1.78586 1.34172 1.85543 1.93612 1.78470 1.67122 1.52383 1.30971 1.04585 1.15888 1.27499 1.19080 0.86935 0.78550 0.82960 1.90911 1.58851 1.47967 1.41869 1.48213 1.08802 1.61146 1.14567 1.21809 0.93864 0.96739 0.89495 1.21966 0.98300 0.95503 1.01497 1.21525 0.92990 1.02132 0.98407 1.22340 1.00788 0.94434 0.96802 0.91502 1.20827 0.83581 1.01773 0.88140 1.44050 1.46064 1.10601 1.31023 1.19196 1.11801 1.16485 0.90608 0.91949 1.25304 0.97629 1.00825 0.95340 1.69909 1.41255 1.40261 1.03748 0.86271 0.81729 0.79887 0.78767 1.21287 1.21701 1.20406 1.21128 0.92504 0.87602 0.97396 1.22607 0.96436 1.03000 0.94704 1.21453 0.76239 0.97262 0.99574 0.91304 0.85395 0.85017 0.85342 0.82618 0.82728 0.91038 0.90273 0.91021 0.91664 0.91404 0.92028 0.88734 0.96404 0.93636 0.92496 0.96705 0.91678 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.67 10.62 101.05 1.07 -1.59 16 2 S 2.46 23.96 4.60 -107.50 -0.49 23.46 16 3 O -0.92 -12.84 17.95 -59.52 -1.07 -13.91 16 4 O -0.92 -13.38 17.95 -59.54 -1.07 -14.45 16 5 C -0.66 -5.36 4.65 36.00 0.17 -5.19 16 6 C 0.54 7.87 7.60 -10.99 -0.08 7.79 16 7 O -0.52 -9.77 11.29 2.55 0.03 -9.74 16 8 N -0.60 -8.44 2.97 -165.32 -0.49 -8.93 16 9 C 0.10 1.02 6.34 -3.66 -0.02 1.00 16 10 C -0.13 -1.42 6.08 -26.49 -0.16 -1.58 16 11 C -0.11 -1.61 5.24 -26.65 -0.14 -1.75 16 12 C -0.12 -2.28 2.21 -90.54 -0.20 -2.48 16 13 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.18 4.30 4.55 -3.70 -0.02 4.29 16 15 N -0.60 -15.37 2.99 -172.26 -0.52 -15.88 16 16 C -0.25 -7.08 9.53 -15.06 -0.14 -7.22 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 18 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 19 N -0.91 -26.13 10.86 55.49 0.60 -25.53 16 20 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.14 3.20 6.50 -3.68 -0.02 3.18 16 25 C -0.13 -2.62 3.82 -26.62 -0.10 -2.72 16 26 C 0.16 2.76 2.64 -67.73 -0.18 2.58 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 31 H 0.16 0.74 7.91 -51.92 -0.41 0.33 16 32 H 0.15 0.62 7.75 -51.93 -0.40 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.49 5.96 -51.93 -0.31 0.18 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 2.49 6.14 -51.93 -0.32 2.17 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 45 H 0.09 1.75 6.12 -51.93 -0.32 1.43 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -38.58 357.60 -9.74 -48.32 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.18 Total: -2.13 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.40 Total: -50.35 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -2.11 Total: -38.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 23.96 SS G_CDS: -0.49 Total: 23.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.58 -9.74 -48.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021536740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.035 kcal (2) G-P(sol) polarization free energy of solvation -38.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds