Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36932 * 120.00068 * 2 1 4 4 H 1.07998 * 120.00158 * 144.53790 * 3 2 1 5 5 C 1.38811 * 120.00179 * 324.53292 * 3 2 1 6 6 N 1.31618 * 120.00213 * 157.65907 * 5 3 2 7 7 Si 1.86801 * 119.99896 * 337.66295 * 5 3 2 8 8 H 1.48500 * 109.47386 * 95.56277 * 7 5 3 9 9 H 1.48498 * 109.47228 * 215.56302 * 7 5 3 10 10 H 1.48500 * 109.47114 * 335.56429 * 7 5 3 11 11 C 1.46501 * 119.99673 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.52035 * 179.97438 * 11 2 1 13 13 C 1.53046 * 109.49789 * 59.84269 * 11 2 1 14 14 C 1.53037 * 109.53706 * 178.68052 * 13 11 2 15 15 C 1.52760 * 109.38301 * 61.24032 * 14 13 11 16 16 N 1.46930 * 109.01019 * 305.58640 * 15 14 13 17 17 C 1.34775 * 120.62875 * 233.58440 * 16 15 14 18 18 O 1.21281 * 119.99483 * 179.71636 * 17 16 15 19 19 C 1.50702 * 120.00031 * 359.72304 * 17 16 15 20 20 C 1.53004 * 109.46668 * 179.97438 * 19 17 16 21 21 C 1.53041 * 113.15362 * 275.54160 * 20 19 17 22 22 S 1.81495 * 89.86522 * 211.87094 * 21 20 19 23 23 O 1.42103 * 112.71459 * 280.42785 * 22 21 20 24 24 O 1.42100 * 112.85682 * 136.68308 * 22 21 20 25 25 C 1.53048 * 113.14851 * 175.11540 * 20 19 17 26 26 C 1.46921 * 118.73409 * 53.30892 * 16 15 14 27 27 H 1.08998 * 109.47438 * 267.95411 * 1 2 3 28 28 H 1.08998 * 109.46659 * 27.95931 * 1 2 3 29 29 H 1.09003 * 109.46973 * 147.95345 * 1 2 3 30 30 H 0.97000 * 119.99847 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.45585 * 298.70238 * 13 11 2 32 32 H 1.09002 * 109.45621 * 58.67516 * 13 11 2 33 33 H 1.08999 * 109.49551 * 181.31609 * 14 13 11 34 34 H 1.09006 * 109.49679 * 301.37938 * 14 13 11 35 35 H 1.09003 * 109.50676 * 185.70671 * 15 14 13 36 36 H 1.08996 * 109.42984 * 65.42565 * 15 14 13 37 37 H 1.08988 * 109.47567 * 59.99823 * 19 17 16 38 38 H 1.09000 * 109.46469 * 299.99468 * 19 17 16 39 39 H 1.09003 * 112.49943 * 45.33020 * 20 19 17 40 40 H 1.09006 * 113.14731 * 327.12117 * 21 20 19 41 41 H 1.09006 * 113.14550 * 96.59441 * 21 20 19 42 42 H 1.08998 * 113.14851 * 263.40123 * 25 20 19 43 43 H 1.08995 * 113.14828 * 32.88727 * 25 20 19 44 44 H 1.09000 * 109.58977 * 66.43241 * 26 16 15 45 45 H 1.09001 * 109.58352 * 186.85958 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0795 1.2726 0.5426 5 6 1.6489 2.2765 -0.6975 6 7 2.0221 3.4953 -0.3695 7 14 0.4452 2.0144 -2.1017 8 1 -0.9436 2.1636 -1.5976 9 1 0.6970 3.0210 -3.1640 10 1 0.6252 0.6501 -2.6599 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0706 0.0000 13 6 1.8252 -2.0741 -1.2465 14 6 2.6145 -3.3851 -1.2636 15 6 2.2540 -4.2100 -0.0295 16 7 2.4681 -3.3921 1.1722 17 6 3.2416 -3.8418 2.1801 18 8 3.4147 -3.1549 3.1645 19 6 3.8916 -5.1980 2.0837 20 6 4.7089 -5.4629 3.3497 21 6 6.1165 -4.8648 3.2934 22 16 6.7322 -6.2279 4.3214 23 8 6.4502 -6.0447 5.7021 24 8 7.9705 -6.7510 3.8607 25 6 5.3109 -6.8693 3.3940 26 6 1.8278 -2.0721 1.2514 27 1 -0.3634 -0.0367 1.0270 28 1 -0.3632 0.9077 -0.4818 29 1 -0.3633 -0.8711 -0.5453 30 1 1.6718 4.2574 -0.8567 31 1 0.7575 -2.2931 -1.2319 32 1 2.0649 -1.4944 -2.1380 33 1 2.3663 -3.9474 -2.1638 34 1 3.6824 -3.1670 -1.2538 35 1 2.8876 -5.0960 0.0139 36 1 1.2074 -4.5091 -0.0863 37 1 4.5492 -5.2249 1.2149 38 1 3.1221 -5.9631 1.9808 39 1 4.1675 -5.1997 4.2584 40 1 6.5402 -4.8601 2.2891 41 1 6.1889 -3.8928 3.7816 42 1 4.7091 -7.5752 3.9664 43 1 5.5791 -7.2517 2.4092 44 1 0.7457 -2.1933 1.3013 45 1 2.1802 -1.5478 2.1397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027472109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -51.188502 kcal Electronic energy + Delta-G solvation = -27001.887916 eV Core-core repulsion = 23148.707301 eV Total energy + Delta-G solvation = -3853.180615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.29713 -38.18143 -37.59366 -36.85725 -36.30044 -35.34646 -32.48027 -31.62801 -30.35439 -28.78611 -27.00599 -26.22250 -25.13738 -23.77807 -21.90515 -21.41189 -19.64161 -19.17199 -18.76031 -17.29728 -16.85414 -16.80381 -16.72962 -16.43512 -15.82880 -15.59221 -15.27605 -14.76047 -14.34326 -14.20920 -13.83436 -13.58664 -13.46176 -13.26867 -13.07213 -12.63713 -12.58748 -12.55038 -12.52762 -12.40885 -12.33753 -12.21464 -11.68901 -11.50570 -11.34593 -11.09638 -10.91341 -10.75173 -10.62984 -10.54064 -10.43637 -10.17343 -9.98999 -9.71006 -9.56865 -8.73522 -8.40326 -6.91507 -6.02699 -3.43718 -0.17380 1.67073 2.65377 2.99679 3.26891 3.35534 3.42225 3.46490 3.66102 3.80127 4.24581 4.47111 4.48268 4.64861 4.68368 4.75775 4.87137 4.97776 5.04669 5.07978 5.15039 5.19449 5.23551 5.29769 5.41405 5.50291 5.58062 5.69829 5.71675 5.79727 5.93919 6.04327 6.15001 6.26246 6.32438 6.45846 6.52745 6.66356 6.79277 6.82633 7.48837 7.98529 8.22121 8.33416 8.92161 9.66029 10.03922 11.12849 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002631 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.823905 B =10639.778407 C =11154.124783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.602 5.602 3 C -0.270 4.270 4 H 0.080 0.920 5 C 0.034 3.966 6 N -0.899 5.899 7 Si 0.885 3.115 8 H -0.288 1.288 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.074 0.926 13 C -0.139 4.139 14 C -0.133 4.133 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.510 3.490 18 O -0.538 6.538 19 C -0.117 4.117 20 C -0.053 4.053 21 C -0.593 4.593 22 S 2.407 3.593 23 O -0.914 6.914 24 O -0.930 6.930 25 C -0.601 4.601 26 C 0.099 3.901 27 H 0.017 0.983 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.061 0.939 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -24.486 2.064 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.325 5.325 3 C -0.399 4.399 4 H 0.098 0.902 5 C -0.167 4.167 6 N -0.541 5.541 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.059 3.941 12 H 0.092 0.908 13 C -0.178 4.178 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.297 3.703 18 O -0.415 6.415 19 C -0.159 4.159 20 C -0.073 4.073 21 C -0.722 4.722 22 S 2.589 3.411 23 O -0.911 6.911 24 O -0.927 6.927 25 C -0.729 4.729 26 C -0.025 4.025 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.079 0.921 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.623 -24.209 3.389 24.878 hybrid contribution -1.736 0.355 -1.866 2.573 sum 2.887 -23.854 1.522 24.076 Atomic orbital electron populations 1.21343 0.84952 0.99047 0.98285 1.44031 1.00464 1.01540 1.86461 1.18813 1.08119 0.86348 1.26591 0.90201 1.25424 0.98245 0.95150 0.97860 1.69872 1.46139 0.97668 1.40375 0.86835 0.80387 0.77562 0.83591 1.21582 1.23160 1.19476 1.20726 0.97046 0.85644 0.90635 0.90775 1.22150 0.99467 0.95192 1.01018 1.21846 1.01272 0.97230 0.96796 1.21680 1.01436 0.93598 0.84912 1.48186 1.49111 1.19046 1.17742 1.20496 0.78715 0.88232 0.82809 1.90716 1.61233 1.58429 1.31115 1.21526 1.00309 0.95799 0.98242 1.21228 0.94273 0.90228 1.01603 1.31024 1.05697 1.19268 1.16208 1.08464 0.75972 0.80513 0.76142 1.93727 1.86138 1.83410 1.27824 1.93638 1.40305 1.75754 1.83048 1.31066 1.20605 1.05683 1.15571 1.22331 0.96655 0.81535 1.01980 0.96525 0.93618 0.95086 0.92647 0.92472 0.91383 0.91125 0.91509 0.90170 0.91448 0.88180 0.88095 0.85863 0.83986 0.84965 0.85605 0.83825 0.92108 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.44 59.85 0.51 2.80 16 2 N -0.60 -13.89 2.41 -173.34 -0.42 -14.30 16 3 C -0.27 -7.49 9.85 -15.06 -0.15 -7.64 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 5 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 6 N -0.90 -27.41 13.97 55.49 0.78 -26.63 16 7 Si 0.89 21.93 24.94 -169.99 -4.24 17.69 16 8 H -0.29 -6.95 6.67 56.52 0.38 -6.57 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.15 2.75 -67.81 -0.19 2.96 16 12 H 0.07 1.51 7.89 -51.93 -0.41 1.10 16 13 C -0.14 -2.14 5.11 -26.69 -0.14 -2.28 16 14 C -0.13 -1.45 6.06 -26.83 -0.16 -1.61 16 15 C 0.11 1.01 6.31 -3.93 -0.02 0.98 16 16 N -0.61 -7.95 2.98 -173.03 -0.52 -8.47 16 17 C 0.51 6.64 7.70 -10.98 -0.08 6.56 16 18 O -0.54 -9.25 15.19 5.56 0.08 -9.17 16 19 C -0.12 -0.91 3.82 -27.88 -0.11 -1.02 16 20 C -0.05 -0.39 2.79 -90.57 -0.25 -0.65 16 21 C -0.59 -4.17 7.49 37.18 0.28 -3.89 16 22 S 2.41 16.07 7.55 -107.50 -0.81 15.25 16 23 O -0.91 -9.65 18.18 -57.31 -1.04 -10.69 16 24 O -0.93 -9.13 18.18 -57.31 -1.04 -10.17 16 25 C -0.60 -2.62 7.50 37.18 0.28 -2.34 16 26 C 0.10 1.65 5.79 -3.71 -0.02 1.63 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 1.06 3.08 -51.93 -0.16 0.90 16 29 H 0.03 0.56 6.45 -51.93 -0.34 0.23 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.06 0.86 6.72 -51.93 -0.35 0.51 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.57 7.43 -51.94 -0.39 0.19 16 38 H 0.10 0.55 7.95 -51.93 -0.41 0.14 16 39 H 0.12 1.08 7.72 -51.93 -0.40 0.68 16 40 H 0.14 0.76 7.95 -51.93 -0.41 0.35 16 41 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.14 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.06 0.99 7.51 -51.93 -0.39 0.60 16 45 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -38.18 360.35 -8.82 -47.00 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.89 Total: -2.32 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.15 Total: -3.63 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.16 Total: -49.40 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -2.00 Total: -30.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.24 Total: 17.69 kcal Atomic # 16 Polarization: 16.07 SS G_CDS: -0.81 Total: 15.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.18 -8.82 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027472109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.184 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds