Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99236 * 2 1 4 4 H 1.08009 * 119.99900 * 200.40287 * 3 2 1 5 5 C 1.38812 * 120.00503 * 20.40480 * 3 2 1 6 6 N 1.31619 * 120.00028 * 14.98114 * 5 3 2 7 7 Si 1.86802 * 120.00193 * 194.98509 * 5 3 2 8 8 H 1.48505 * 109.47036 * 84.99990 * 7 5 3 9 9 H 1.48497 * 109.47367 * 205.00009 * 7 5 3 10 10 H 1.48502 * 109.47057 * 325.00379 * 7 5 3 11 11 C 1.46500 * 120.00274 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49369 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49508 * 300.16305 * 11 2 1 14 14 C 1.53046 * 109.53462 * 181.32046 * 13 11 2 15 15 C 1.53632 * 109.23921 * 298.50871 * 14 13 11 16 16 N 1.46924 * 108.54114 * 54.85820 * 15 14 13 17 17 C 1.34778 * 120.63362 * 126.36788 * 16 15 14 18 18 O 1.21281 * 120.00500 * 179.72032 * 17 16 15 19 19 C 1.50704 * 119.99388 * 359.71920 * 17 16 15 20 20 H 1.08997 * 109.64206 * 300.69759 * 19 17 16 21 21 C 1.53883 * 109.64540 * 180.27116 * 19 17 16 22 22 C 1.55042 * 106.62504 * 193.09955 * 21 19 17 23 23 S 1.83291 * 102.56577 * 42.43315 * 22 21 19 24 24 O 1.42098 * 109.35226 * 90.18899 * 23 22 21 25 25 O 1.42100 * 109.34987 * 223.25342 * 23 22 21 26 26 C 1.54162 * 109.53925 * 61.06312 * 19 17 16 27 27 C 1.46925 * 118.73996 * 306.09213 * 16 15 14 28 28 H 1.08991 * 109.47234 * 275.11839 * 1 2 3 29 29 H 1.08992 * 109.47461 * 35.12895 * 1 2 3 30 30 H 1.09005 * 109.46239 * 155.12563 * 1 2 3 31 31 H 0.96996 * 120.00199 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.46242 * 301.33598 * 13 11 2 33 33 H 1.08990 * 109.46118 * 61.31359 * 13 11 2 34 34 H 1.08993 * 109.50084 * 58.58346 * 14 13 11 35 35 H 1.08999 * 109.49881 * 178.65450 * 14 13 11 36 36 H 1.09000 * 109.73981 * 295.11862 * 15 14 13 37 37 H 1.08997 * 109.66535 * 174.55028 * 15 14 13 38 38 H 1.08999 * 110.02486 * 312.38947 * 21 19 17 39 39 H 1.09004 * 110.02503 * 73.80524 * 21 19 17 40 40 H 1.09001 * 110.79036 * 160.70209 * 22 21 19 41 41 H 1.09004 * 110.78788 * 284.16354 * 22 21 19 42 42 H 1.09001 * 110.32178 * 266.59503 * 26 19 17 43 43 H 1.09006 * 110.32097 * 28.79257 * 26 19 17 44 44 H 1.09001 * 109.59216 * 173.64814 * 27 16 15 45 45 H 1.08998 * 109.58943 * 294.07411 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1789 1.2154 -0.3261 5 6 1.5208 2.3504 0.4191 6 7 0.3880 2.2832 1.0859 7 14 2.2822 4.0128 0.0366 8 1 1.8672 4.4466 -1.3216 9 1 1.8226 5.0097 1.0367 10 1 3.7622 3.9035 0.0906 11 6 2.1976 -1.2687 0.0006 12 1 3.2694 -1.0699 0.0009 13 6 1.8253 -2.0729 1.2482 14 6 2.6148 -3.3839 1.2665 15 6 2.2453 -4.2146 0.0281 16 7 2.4685 -3.3929 -1.1692 17 6 3.2414 -3.8436 -2.1772 18 8 3.4138 -3.1579 -3.1626 19 6 3.8915 -5.1998 -2.0797 20 1 4.5409 -5.2327 -1.2049 21 6 4.7190 -5.4693 -3.3488 22 6 5.0731 -6.9787 -3.3352 23 16 3.4998 -7.7526 -2.8008 24 8 2.7128 -8.0572 -3.9441 25 8 3.7747 -8.7637 -1.8410 26 6 2.8037 -6.2855 -1.9589 27 6 1.8281 -2.0731 -1.2497 28 1 -0.3633 0.0917 1.0235 29 1 -0.3634 0.8404 -0.5913 30 1 -0.3632 -0.9324 -0.4323 31 1 -0.0512 3.0968 1.3791 32 1 2.0646 -1.4924 2.1393 33 1 0.7578 -2.2923 1.2337 34 1 3.6826 -3.1657 1.2560 35 1 2.3670 -3.9452 2.1674 36 1 1.1966 -4.5070 0.0804 37 1 2.8731 -5.1045 -0.0172 38 1 4.1308 -5.2318 -4.2352 39 1 5.6305 -4.8718 -3.3339 40 1 5.3529 -7.3194 -4.3320 41 1 5.8680 -7.1831 -2.6179 42 1 2.6066 -6.5089 -0.9104 43 1 1.8892 -5.9621 -2.4563 44 1 2.1804 -1.5494 -2.1384 45 1 0.7460 -2.1943 -1.2995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027482649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = -73.289581 kcal Electronic energy + Delta-G solvation = -27477.632701 eV Core-core repulsion = 23623.493712 eV Total energy + Delta-G solvation = -3854.138989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.51779 -37.84518 -37.39389 -36.43780 -36.03852 -35.19835 -32.50366 -31.43084 -30.63447 -28.68790 -26.58787 -26.06072 -24.97295 -23.73710 -22.33010 -21.64488 -19.62553 -19.25934 -18.81232 -17.64837 -17.09587 -16.83284 -16.73177 -16.03199 -15.66819 -15.40768 -14.87330 -14.48458 -14.40152 -14.16733 -13.94443 -13.69206 -13.46334 -13.01344 -12.87209 -12.73955 -12.54071 -12.48525 -12.37208 -12.35338 -12.24714 -12.03901 -11.62171 -11.29289 -11.08827 -10.99864 -10.90590 -10.76076 -10.67651 -10.46558 -10.39123 -10.19246 -9.92998 -9.87869 -9.65860 -8.68819 -8.44302 -6.83828 -5.76697 -3.21178 -0.37728 2.06930 2.50656 2.91101 3.20453 3.37253 3.43813 3.44401 3.60508 3.91661 4.04734 4.16522 4.27705 4.41729 4.46013 4.61122 4.81768 4.97035 5.01256 5.04916 5.20087 5.22524 5.38363 5.43998 5.44793 5.50019 5.62571 5.68704 5.75887 5.89334 6.05895 6.13199 6.28224 6.41831 6.53492 6.69890 6.85154 6.91684 7.33361 7.44729 7.66871 7.77638 8.12796 8.34206 9.18550 9.81647 10.28746 11.28150 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.002801 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.288605 B = 9993.957221 C =10450.716887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.599 5.599 17 C 0.522 3.478 18 O -0.535 6.535 19 C -0.103 4.103 20 H 0.119 0.881 21 C -0.102 4.102 22 C -0.585 4.585 23 S 2.391 3.609 24 O -0.933 6.933 25 O -0.937 6.937 26 C -0.596 4.596 27 C 0.095 3.905 28 H 0.031 0.969 29 H 0.043 0.957 30 H -0.002 1.002 31 H 0.253 0.747 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -20.099 -3.564 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.332 5.332 17 C 0.307 3.693 18 O -0.412 6.412 19 C -0.126 4.126 20 H 0.137 0.863 21 C -0.141 4.141 22 C -0.715 4.715 23 S 2.574 3.426 24 O -0.930 6.930 25 O -0.935 6.935 26 C -0.724 4.724 27 C -0.029 4.029 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.110 0.890 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.579 -20.471 -4.139 21.897 hybrid contribution 0.501 1.786 0.234 1.869 sum 7.080 -18.685 -3.905 20.360 Atomic orbital electron populations 1.20794 0.82525 0.95426 0.99510 1.43908 1.01856 1.00018 1.85633 1.19232 0.96984 0.84882 1.37513 0.91301 1.24944 0.97837 0.98343 0.98417 1.70081 1.18862 1.26883 1.39319 0.86266 0.78651 0.83909 0.77676 1.21398 1.21769 1.20563 1.20563 0.96453 0.86271 0.90677 0.91702 1.22136 0.99463 0.94649 1.01038 1.22033 1.01145 0.97505 0.96562 1.22101 1.01605 0.93695 0.85003 1.48147 1.48440 1.18925 1.17673 1.20006 0.79137 0.87079 0.83045 1.90733 1.61426 1.58102 1.30922 1.21738 0.95715 0.93194 1.01909 0.86320 1.22060 1.02173 0.92089 0.97768 1.30638 1.20318 1.07562 1.13022 1.09105 0.79337 0.77666 0.76540 1.93638 1.67330 1.82960 1.49117 1.93623 1.84435 1.53655 1.61741 1.30782 1.09356 1.16768 1.15520 1.22503 0.96975 0.81120 1.02256 0.95111 0.93842 0.98324 0.93721 0.91377 0.92406 0.91656 0.91152 0.91086 0.89913 0.88161 0.87644 0.84076 0.84253 0.83199 0.83699 0.89039 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 8.03 59.85 0.48 4.31 16 2 N -0.59 -14.24 2.82 -173.34 -0.49 -14.72 16 3 C -0.26 -6.93 9.61 -15.06 -0.14 -7.07 16 4 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 5 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 6 N -0.91 -25.89 10.67 55.49 0.59 -25.30 16 7 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.17 3.26 2.74 -67.81 -0.19 3.07 16 12 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 13 C -0.13 -2.15 5.14 -26.69 -0.14 -2.29 16 14 C -0.13 -1.52 6.10 -26.38 -0.16 -1.68 16 15 C 0.10 0.97 5.54 -3.48 -0.02 0.95 16 16 N -0.60 -7.89 2.97 -172.50 -0.51 -8.40 16 17 C 0.52 6.69 6.94 -10.98 -0.08 6.62 16 18 O -0.53 -9.01 15.21 5.56 0.08 -8.92 16 19 C -0.10 -0.79 2.12 -90.70 -0.19 -0.99 16 20 H 0.12 0.61 7.67 -51.93 -0.40 0.21 16 21 C -0.10 -0.71 5.27 -25.19 -0.13 -0.84 16 22 C -0.59 -2.77 7.31 38.24 0.28 -2.49 16 23 S 2.39 16.86 6.10 -107.50 -0.66 16.21 16 24 O -0.93 -10.37 18.15 -57.73 -1.05 -11.41 16 25 O -0.94 -9.43 18.15 -57.73 -1.05 -10.48 16 26 C -0.60 -3.69 5.60 37.76 0.21 -3.48 16 27 C 0.09 1.62 5.78 -3.71 -0.02 1.60 16 28 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 29 H 0.04 1.12 7.22 -51.93 -0.37 0.75 16 30 H 0.00 -0.03 6.36 -51.93 -0.33 -0.36 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.54 4.18 -51.93 -0.22 0.32 16 38 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.15 0.60 6.28 -51.93 -0.33 0.27 16 43 H 0.14 0.95 7.87 -51.93 -0.41 0.54 16 44 H 0.09 1.80 7.01 -51.93 -0.36 1.43 16 45 H 0.07 1.11 6.50 -51.93 -0.34 0.78 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -36.55 357.07 -9.76 -46.32 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.85 Total: -3.05 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.19 Total: -2.30 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.41 Total: -48.43 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -2.01 Total: -30.82 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 16.86 SS G_CDS: -0.66 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.55 -9.76 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.973 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds