Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99236 * 2 1 4 4 H 1.08009 * 119.99900 * 200.40287 * 3 2 1 5 5 C 1.38812 * 120.00503 * 20.40480 * 3 2 1 6 6 N 1.31619 * 120.00028 * 14.98114 * 5 3 2 7 7 Si 1.86802 * 120.00193 * 194.98509 * 5 3 2 8 8 H 1.48505 * 109.47036 * 84.99990 * 7 5 3 9 9 H 1.48497 * 109.47367 * 205.00009 * 7 5 3 10 10 H 1.48502 * 109.47057 * 325.00379 * 7 5 3 11 11 C 1.46500 * 120.00274 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49369 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49508 * 300.16305 * 11 2 1 14 14 C 1.53046 * 109.53462 * 181.32046 * 13 11 2 15 15 C 1.53632 * 109.23921 * 298.50871 * 14 13 11 16 16 N 1.46924 * 108.54114 * 54.85820 * 15 14 13 17 17 C 1.34778 * 120.63362 * 126.36788 * 16 15 14 18 18 O 1.21281 * 120.00500 * 179.72032 * 17 16 15 19 19 C 1.50704 * 119.99388 * 359.71920 * 17 16 15 20 20 H 1.08997 * 109.64206 * 300.69759 * 19 17 16 21 21 C 1.53883 * 109.64540 * 180.27116 * 19 17 16 22 22 C 1.55042 * 106.62504 * 193.09955 * 21 19 17 23 23 S 1.83291 * 102.56577 * 42.43315 * 22 21 19 24 24 O 1.42098 * 109.35226 * 90.18899 * 23 22 21 25 25 O 1.42100 * 109.34987 * 223.25342 * 23 22 21 26 26 C 1.54162 * 109.53925 * 61.06312 * 19 17 16 27 27 C 1.46925 * 118.73996 * 306.09213 * 16 15 14 28 28 H 1.08991 * 109.47234 * 275.11839 * 1 2 3 29 29 H 1.08992 * 109.47461 * 35.12895 * 1 2 3 30 30 H 1.09005 * 109.46239 * 155.12563 * 1 2 3 31 31 H 0.96996 * 120.00199 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.46242 * 301.33598 * 13 11 2 33 33 H 1.08990 * 109.46118 * 61.31359 * 13 11 2 34 34 H 1.08993 * 109.50084 * 58.58346 * 14 13 11 35 35 H 1.08999 * 109.49881 * 178.65450 * 14 13 11 36 36 H 1.09000 * 109.73981 * 295.11862 * 15 14 13 37 37 H 1.08997 * 109.66535 * 174.55028 * 15 14 13 38 38 H 1.08999 * 110.02486 * 312.38947 * 21 19 17 39 39 H 1.09004 * 110.02503 * 73.80524 * 21 19 17 40 40 H 1.09001 * 110.79036 * 160.70209 * 22 21 19 41 41 H 1.09004 * 110.78788 * 284.16354 * 22 21 19 42 42 H 1.09001 * 110.32178 * 266.59503 * 26 19 17 43 43 H 1.09006 * 110.32097 * 28.79257 * 26 19 17 44 44 H 1.09001 * 109.59216 * 173.64814 * 27 16 15 45 45 H 1.08998 * 109.58943 * 294.07411 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1789 1.2154 -0.3261 5 6 1.5208 2.3504 0.4191 6 7 0.3880 2.2832 1.0859 7 14 2.2822 4.0128 0.0366 8 1 1.8672 4.4466 -1.3216 9 1 1.8226 5.0097 1.0367 10 1 3.7622 3.9035 0.0906 11 6 2.1976 -1.2687 0.0006 12 1 3.2694 -1.0699 0.0009 13 6 1.8253 -2.0729 1.2482 14 6 2.6148 -3.3839 1.2665 15 6 2.2453 -4.2146 0.0281 16 7 2.4685 -3.3929 -1.1692 17 6 3.2414 -3.8436 -2.1772 18 8 3.4138 -3.1579 -3.1626 19 6 3.8915 -5.1998 -2.0797 20 1 4.5409 -5.2327 -1.2049 21 6 4.7190 -5.4693 -3.3488 22 6 5.0731 -6.9787 -3.3352 23 16 3.4998 -7.7526 -2.8008 24 8 2.7128 -8.0572 -3.9441 25 8 3.7747 -8.7637 -1.8410 26 6 2.8037 -6.2855 -1.9589 27 6 1.8281 -2.0731 -1.2497 28 1 -0.3633 0.0917 1.0235 29 1 -0.3634 0.8404 -0.5913 30 1 -0.3632 -0.9324 -0.4323 31 1 -0.0512 3.0968 1.3791 32 1 2.0646 -1.4924 2.1393 33 1 0.7578 -2.2923 1.2337 34 1 3.6826 -3.1657 1.2560 35 1 2.3670 -3.9452 2.1674 36 1 1.1966 -4.5070 0.0804 37 1 2.8731 -5.1045 -0.0172 38 1 4.1308 -5.2318 -4.2352 39 1 5.6305 -4.8718 -3.3339 40 1 5.3529 -7.3194 -4.3320 41 1 5.8680 -7.1831 -2.6179 42 1 2.6066 -6.5089 -0.9104 43 1 1.8892 -5.9621 -2.4563 44 1 2.1804 -1.5494 -2.1384 45 1 0.7460 -2.1943 -1.2995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027482649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -101.002390 kcal Electronic energy + Delta-G solvation = -27478.834419 eV Core-core repulsion = 23623.493712 eV Total energy + Delta-G solvation = -3855.340707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 29.51 seconds Orbital eigenvalues (eV) -41.53391 -39.11745 -38.06541 -37.12989 -36.86278 -36.68779 -33.98084 -32.85375 -31.47030 -30.05353 -28.08247 -27.36379 -25.86443 -25.31873 -23.16114 -22.93495 -20.84838 -19.99258 -19.78522 -18.82054 -18.38494 -17.72356 -17.60546 -17.04852 -16.70858 -16.43898 -16.18398 -15.70315 -15.49896 -15.21465 -15.02266 -14.75184 -14.72986 -14.47653 -13.91224 -13.78411 -13.69128 -13.33877 -13.22525 -13.14896 -13.02709 -12.94868 -12.89797 -12.78009 -12.52757 -12.33036 -12.20288 -12.06470 -11.94365 -11.83532 -11.77537 -11.60979 -11.38878 -11.28897 -10.75753 -10.64389 -9.71112 -8.79922 -7.85595 -5.31604 -0.90747 1.43143 1.45262 1.46009 1.53178 1.66747 1.92710 2.49131 2.65740 3.05728 3.27089 3.31518 3.44760 3.55139 3.62265 3.73620 3.90178 4.01602 4.06407 4.12185 4.18562 4.25383 4.37860 4.50786 4.57330 4.65255 4.71748 4.77548 4.83263 4.88623 4.91624 4.97739 5.02953 5.12231 5.16826 5.27470 5.43850 5.49645 5.50924 5.62710 5.70627 6.29222 6.44307 7.10954 7.13717 7.84762 8.26106 9.16944 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.002801 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.288605 B = 9993.957221 C =10450.716887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.065 0.935 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.271 1.271 11 C 0.168 3.832 12 H 0.047 0.953 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.516 3.484 18 O -0.583 6.583 19 C -0.097 4.097 20 H 0.159 0.841 21 C -0.108 4.108 22 C -0.559 4.559 23 S 2.402 3.598 24 O -0.982 6.982 25 O -0.967 6.967 26 C -0.590 4.590 27 C 0.111 3.889 28 H 0.007 0.993 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.248 0.752 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.171 0.829 42 H 0.181 0.819 43 H 0.141 0.859 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -22.595 -2.850 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.082 0.918 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.196 1.196 11 C 0.060 3.940 12 H 0.065 0.935 13 C -0.164 4.164 14 C -0.164 4.164 15 C -0.028 4.028 16 N -0.333 5.333 17 C 0.304 3.696 18 O -0.463 6.463 19 C -0.119 4.119 20 H 0.176 0.824 21 C -0.147 4.147 22 C -0.691 4.691 23 S 2.589 3.411 24 O -0.979 6.979 25 O -0.964 6.964 26 C -0.719 4.719 27 C -0.014 4.014 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.173 0.827 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.160 0.840 44 H 0.076 0.924 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.286 -23.053 -3.414 24.733 hybrid contribution 0.025 2.566 -0.024 2.566 sum 8.312 -20.487 -3.438 22.374 Atomic orbital electron populations 1.20482 0.82619 0.95671 0.97664 1.44116 1.02120 1.01121 1.85955 1.19499 0.97003 0.86464 1.36632 0.91762 1.25648 0.98582 1.01369 0.98842 1.70225 1.20095 1.27189 1.40565 0.85319 0.78289 0.80009 0.77048 1.21484 1.21865 1.19594 1.20722 0.94891 0.85175 0.93242 0.93481 1.21954 1.00230 0.96574 0.97664 1.22004 1.00348 0.95069 0.98951 1.22473 1.03799 0.94129 0.82400 1.48198 1.48211 1.17581 1.19265 1.20931 0.78227 0.88558 0.81891 1.90718 1.62854 1.59963 1.32793 1.21842 0.96258 0.89814 1.03955 0.82350 1.22090 1.02135 0.93651 0.96846 1.30514 1.18927 1.04916 1.14765 1.08577 0.79681 0.77532 0.75299 1.93579 1.69359 1.84148 1.50835 1.93584 1.84976 1.55479 1.62344 1.30764 1.08725 1.15130 1.17314 1.21927 0.96985 0.83137 0.99382 0.97457 0.96989 0.95064 0.94225 0.94160 0.92536 0.91381 0.87915 0.89498 0.85377 0.89994 0.86988 0.82678 0.81151 0.80104 0.84032 0.92356 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 569. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 8.03 127.77 1.03 9.81 16 2 N -0.61 -30.22 2.82 -702.34 -1.98 -32.20 16 3 C -0.27 -14.77 9.61 84.03 0.81 -13.96 16 4 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 5 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 6 N -0.93 -55.05 10.67 21.65 0.23 -54.82 16 7 Si 0.96 45.62 29.58 68.60 2.03 47.64 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 C 0.17 6.49 2.74 45.07 0.12 6.62 16 12 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 13 C -0.12 -3.91 5.14 30.62 0.16 -3.75 16 14 C -0.13 -2.39 6.10 30.82 0.19 -2.20 16 15 C 0.09 1.41 5.54 86.51 0.48 1.89 16 16 N -0.60 -14.52 2.97 -818.06 -2.43 -16.95 16 17 C 0.52 12.23 6.94 87.66 0.61 12.84 16 18 O -0.58 -19.66 15.21 -3.03 -0.05 -19.70 16 19 C -0.10 -1.11 2.12 -10.85 -0.02 -1.14 16 20 H 0.16 0.64 7.67 -2.39 -0.02 0.63 16 21 C -0.11 -1.19 5.27 31.59 0.17 -1.02 16 22 C -0.56 -3.14 7.31 72.68 0.53 -2.61 16 23 S 2.40 27.58 6.10 -56.49 -0.34 27.23 16 24 O -0.98 -20.91 18.15 -127.47 -2.31 -23.22 16 25 O -0.97 -16.70 18.15 -127.47 -2.31 -19.01 16 26 C -0.59 -5.02 5.60 72.38 0.40 -4.61 16 27 C 0.11 3.78 5.78 86.36 0.50 4.28 16 28 H 0.01 0.38 7.40 -2.39 -0.02 0.36 16 29 H 0.01 0.62 7.22 -2.39 -0.02 0.60 16 30 H 0.03 1.28 6.36 -2.38 -0.02 1.26 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.78 7.71 -2.39 -0.02 1.76 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 0.82 4.18 -2.39 -0.01 0.81 16 38 H 0.08 1.24 7.71 -2.39 -0.02 1.22 16 39 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.18 0.38 6.28 -2.39 -0.01 0.36 16 43 H 0.14 1.46 7.87 -2.38 -0.02 1.44 16 44 H 0.06 2.38 7.01 -2.39 -0.02 2.36 16 45 H 0.06 2.18 6.50 -2.39 -0.02 2.17 16 Total: -1.00 -85.07 357.07 -0.77 -85.85 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 0.99 Total: 1.39 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.40 Total: 3.80 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.17 Total: -103.97 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -4.67 Total: -61.94 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 27.58 SS G_CDS: -0.34 Total: 27.23 kcal Total: -85.07 -0.77 -85.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.155 kcal (2) G-P(sol) polarization free energy of solvation -85.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.51 seconds